Mercurial > repos > miller-lab > genome_diversity
view multiple_to_gd_genotype.xml @ 27:8997f2ca8c7a
Update to Miller Lab devshed revision bae0d3306d3b
author | Richard Burhans <burhans@bx.psu.edu> |
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date | Mon, 15 Jul 2013 10:47:35 -0400 |
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children | 184d14e4270d |
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<tool id="gd_multiple_to_gd_genotype" name="Multiple" version="1.0.0"> <description>: to gd_genotype</description> <command interpreter="python"> #import base64 #set species_arg = base64.b64encode(str($species)) multiple_to_gd_genotype.py --input '$input' --output '$output' --dbkey '$dbkey' --species '$species_arg' --format '$input_format' </command> <inputs> <param name="input" type="data" format="txt" label="Input dataset" /> <param name="input_format" type="select" label="Input format"> <option value="csv" selected="true">csv</option> <option value="fstat">fstat</option> <option value="genepop">genepop</option> <option value="vcf">vcf</option> </param> <param name="species" type="text" label="Species"> <sanitizer> <valid initial="string.printable"/> </sanitizer> </param> <param name="dbkey" type="genomebuild" label="Genome" /> </inputs> <outputs> <data name="output" format="gd_genotype" /> </outputs> <!-- <tests> <test> <param name="input" value="test_in/sample.gd_snp" ftype="gd_snp" /> <param name="p1_input" value="test_in/a.gd_indivs" ftype="gd_indivs" /> <param name="lo_coverage" value="0" /> <param name="hi_coverage" value="1000" /> <param name="low_ind_cov" value="3" /> <param name="lo_quality" value="30" /> <output name="output" file="test_out/modify_snp_table/modify.gd_snp" /> </test> </tests> --> <help> **Dataset formats** ----- **What it does** ----- **Example** </help> </tool>