Mercurial > repos > miller-lab > package_raxml_7_7_6

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Initial version
author miller-lab
date Thu, 19 Sep 2013 18:09:26 -0400
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<?xml version="1.0"?>
<tool_dependency>
  <package name="raxml" version="7.7.6">
    <install version="1.0">
      <actions>
        <!-- Download source code -->
        <action type="download_by_url" target_filename="standard-RAxML-7.7.6.tar.gz">https://github.com/stamatak/standard-RAxML/archive/v7.7.6.tar.gz</action>

        <!-- Build raxml -->
        <action type="shell_command">make -f Makefile.gcc</action>

        <!-- Install raxml -->
        <action type="shell_command">mkdir -p $INSTALL_DIR/bin</action>
        <action type="shell_command">cp raxmlHPC $INSTALL_DIR/bin</action>

        <!-- Set environment for dependent repositories -->
        <action type="set_environment">
          <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
        </action>
      </actions>
    </install>
  </package>
</tool_dependency>