Mercurial > repos > miller-lab > snp_analysis_conversion

annotate test-data/master2snp_output.txt @ 3:edf12470a1a6 default tip

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Bugfix from Belinda, in vcf2pgSnp.pl
author Cathy Riemer <cathy+hg@bx.psu.edu>
date Thu, 19 Mar 2015 12:06:34 -0400
parents 35c20b109be5
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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2
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
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1 #{"column_names":["chr","pos","A","B","Q","1A","1B","1G","1Q"],
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2 #"individuals":[["na",6]],
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3 #"dbkey":"hg19","pos":2,"rPos":2,"ref":1,"scaffold":1,"species":"hg19"}
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4 chr1 41980 A G -1 0 1 0 76
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5 chr1 51672 T C -1 0 1 0 53
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6 chr1 52237 T G -1 0 7 0 63
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7 chr1 53205 G C -1 30 7 1 93
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8 chr1 54042 C T -1 10 3 1 66
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9 chr1 54585 T C -1 19 9 1 94
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10 chr1 55163 C A -1 0 9 0 76
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11 chr1 55301 C T -1 19 15 1 87
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12 chr1 55321 C T -1 12 12 1 95
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13 chr1 55325 T C -1 11 12 1 95
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14 chr1 55925 T C -1 0 12 0 66
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15 chr1 57951 A C -1 0 2 0 72
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16 chr1 58210 A G -1 0 11 0 98
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17 chr1 59050 A G -1 21 6 1 66
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18 chr1 59343 C T -1 23 25 1 57
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19 chr1 59497 T C -1 15 12 1 74
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20 chr1 60828 C T -1 11 1 1 60
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21 chr1 61441 A G -1 0 8 0 23
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22 chr1 68305 C T -1 20 27 1 44
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23 chr1 68315 T C -1 20 27 1 44
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24 chr1 69452 G A -1 37 6 1 61
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25 chr1 69510 A G -1 0 3 0 123
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26 chr1 69551 G C -1 27 4 1 98
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27 chr1 69568 T C -1 29 3 1 98
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28 chr1 77461 G A -1 0 4 0 26
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29 chr1 82733 T C -1 17 18 1 42
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30 chr1 233472 C G -1 42 21 1 118