view test-data/master2snp_output.txt @ 3:edf12470a1a6 default tip

Bugfix from Belinda, in vcf2pgSnp.pl
author Cathy Riemer <cathy+hg@bx.psu.edu>
date Thu, 19 Mar 2015 12:06:34 -0400
parents 35c20b109be5
children
line wrap: on
line source

#{"column_names":["chr","pos","A","B","Q","1A","1B","1G","1Q"],
#"individuals":[["na",6]],
#"dbkey":"hg19","pos":2,"rPos":2,"ref":1,"scaffold":1,"species":"hg19"}
chr1	41980	A	G	-1	0	1	0	76
chr1	51672	T	C	-1	0	1	0	53
chr1	52237	T	G	-1	0	7	0	63
chr1	53205	G	C	-1	30	7	1	93
chr1	54042	C	T	-1	10	3	1	66
chr1	54585	T	C	-1	19	9	1	94
chr1	55163	C	A	-1	0	9	0	76
chr1	55301	C	T	-1	19	15	1	87
chr1	55321	C	T	-1	12	12	1	95
chr1	55325	T	C	-1	11	12	1	95
chr1	55925	T	C	-1	0	12	0	66
chr1	57951	A	C	-1	0	2	0	72
chr1	58210	A	G	-1	0	11	0	98
chr1	59050	A	G	-1	21	6	1	66
chr1	59343	C	T	-1	23	25	1	57
chr1	59497	T	C	-1	15	12	1	74
chr1	60828	C	T	-1	11	1	1	60
chr1	61441	A	G	-1	0	8	0	23
chr1	68305	C	T	-1	20	27	1	44
chr1	68315	T	C	-1	20	27	1	44
chr1	69452	G	A	-1	37	6	1	61
chr1	69510	A	G	-1	0	3	0	123
chr1	69551	G	C	-1	27	4	1	98
chr1	69568	T	C	-1	29	3	1	98
chr1	77461	G	A	-1	0	4	0	26
chr1	82733	T	C	-1	17	18	1	42
chr1	233472	C	G	-1	42	21	1	118