view test-data/masterVarTest.txt @ 3:edf12470a1a6 default tip

Bugfix from Belinda, in vcf2pgSnp.pl
author Cathy Riemer <cathy+hg@bx.psu.edu>
date Thu, 19 Mar 2015 12:06:34 -0400
parents 35c20b109be5
children
line wrap: on
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#ASSEMBLY_ID	GS19026-1100-37-ASM
#CNV_WINDOW_WIDTH	2000
#COSMIC	COSMIC v48
#DBSNP_BUILD	dbSNP build 131
#DGV_VERSION	9
#FORMAT_VERSION	1.5
#GENERATED_AT	2011-Feb-18 17:35:36.151072
#GENERATED_BY	cgatools
#GENE_ANNOTATIONS	NCBI build 37.1
#GENOME_REFERENCE	NCBI build 37
#MIRBASE_VERSION	miRBase version 15
#PFAM_DATE	August 13, 2010
#REPMASK_GENERATED_AT	2010-Dec-03 14:38
#SAMPLE	GS00392-DNA_F04
#SEGDUP_GENERATED_AT	2010-Dec-01 13:40
#SOFTWARE_VERSION	1.3.0
#SRC_SOFTWARE_VERSION	1.10.0.26
#TYPE	VAR-OLPL

>locus	ploidy	chromosome	begin	end	zygosity	varType	reference	allele1Seq	allele2Seq	allele1Score	allele2Score	allele1HapLink	allele2HapLink	xRef	evidenceIntervalId	allele1ReadCount	allele2ReadCount	neitherAlleleReadCount	totalReadCount	minReferenceScore	allele1Gene	allele2Gene	miRBaseId	repeatMasker	segDupOverlap	relativeCoverage	calledPloidy
1	2	chr1	0	10000	no-call	complex	=	?	?											-16							
2	2	chr1	10000	11093	no-call	complex	=	?	?											-172						1.17	N
3	2	chr1	11093	11108	hom	ref	=	=	=											15						1.17	N
4	2	chr1	11108	11135	no-call	complex	=	?	?											-15						1.17	N
5	2	chr1	11135	11145	hom	ref	=	=	=											13						1.17	N
6	2	chr1	11145	11170	no-call	complex	=	?	?											-15						1.17	N
7	2	chr1	11170	11177	hom	ref	=	=	=											12						1.17	N
8	2	chr1	11177	11204	no-call	complex	=	?	?											-111						1.17	N
9	2	chr1	11204	11214	hom	ref	=	=	=											17						1.17	N
10	2	chr1	11214	11236	no-call	complex	=	?	?											-10						1.17	N
11	2	chr1	11236	11269	hom	ref	=	=	=											10						1.17	N
12	2	chr1	11269	11276	no-call	complex	=	?	?											-82	100287102:XM_002342010.1:LOC100287102::::TSS-UPSTREAM:UNKNOWN-INC	100287102:XM_002342010.1:LOC100287102::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
13	2	chr1	11276	11287	hom	ref	=	=	=											16						1.17	N
14	2	chr1	11287	11321	no-call	complex	=	?	?											-53						1.17	N
15	2	chr1	11321	11339	hom	ref	=	=	=											10						1.17	N
16	2	chr1	11339	11350	no-call	complex	=	?	?											-22						1.17	N
17	2	chr1	11350	11364	hom	ref	=	=	=											17						1.17	N
18	2	chr1	11364	11395	no-call	complex	=	?	?											-186						1.17	N
19	2	chr1	11395	11405	hom	ref	=	=	=											23						1.17	N
20	2	chr1	11405	11436	no-call	complex	=	?	?											-93						1.17	N
21	2	chr1	11436	11453	hom	ref	=	=	=											49						1.17	N
22	2	chr1	11453	11481	no-call	complex	=	?	?											-329						1.17	N
23	2	chr1	11481	11504	hom	ref	=	=	=											60						1.17	N
24	2	chr1	11504	11511	no-call	complex	=	?	?											-215	100287102:XM_002342010.1:LOC100287102::::TSS-UPSTREAM:UNKNOWN-INC	100287102:XM_002342010.1:LOC100287102::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
25	2	chr1	11511	11527	hom	ref	=	=	=											88						1.17	N
26	2	chr1	11527	11579	no-call	complex	=	?	?											-1562						1.17	N
27	2	chr1	11579	11637	hom	ref	=	=	=											86						1.17	N
28	2	chr1	11637	11677	no-call	complex	=	?	?											-427						1.17	N
29	2	chr1	11677	11706	hom	ref	=	=	=											41						1.17	N
30	2	chr1	11706	11713	no-call	complex	=	?	?											-44	100287102:XM_002342010.1:LOC100287102::::TSS-UPSTREAM:UNKNOWN-INC	100287102:XM_002342010.1:LOC100287102::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
31	2	chr1	11713	11777	hom	ref	=	=	=											21						1.17	N
32	2	chr1	11777	11816	no-call	complex	=	?	?											-272						1.17	N
33	2	chr1	11816	11859	hom	ref	=	=	=											18						1.17	N
34	2	chr1	11859	11866	no-call	complex	=	?	?											-288	100287102:XM_002342010.1:LOC100287102::::TSS-UPSTREAM:UNKNOWN-INC	100287102:XM_002342010.1:LOC100287102::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
35	2	chr1	11866	11903	hom	ref	=	=	=											76						1.17	N
36	2	chr1	11903	11925	no-call	complex	=	?	?											-490						1.17	N
37	2	chr1	11925	11956	hom	ref	=	=	=											53						1.17	N
38	2	chr1	11956	11973	no-call	complex	=	?	?											-166						1.17	N
39	2	chr1	11973	12006	hom	ref	=	=	=											41						1.17	N
40	2	chr1	12006	12052	no-call	complex	=	?	?											-257						1.17	N
41	2	chr1	12052	12117	hom	ref	=	=	=											-3						1.17	N
42	2	chr1	12117	12124	no-call	complex	=	?	?											-165	100287102:XM_002342010.1:LOC100287102::::UTR5:UNKNOWN-INC	100287102:XM_002342010.1:LOC100287102::::UTR5:UNKNOWN-INC				1.17	N
43	2	chr1	12124	12133	hom	ref	=	=	=											38						1.17	N
44	2	chr1	12133	12172	no-call	complex	=	?	?											-212						1.17	N
45	2	chr1	12172	12186	hom	ref	=	=	=											87						1.17	N
46	2	chr1	12186	12217	no-call	complex	=	?	?											-1410						1.17	N
47	2	chr1	12217	12237	hom	ref	=	=	=											64						1.17	N
48	2	chr1	12237	12244	no-call	complex	=	?	?											-426	100287102:XM_002342010.1:LOC100287102::::INTRON:UNKNOWN-INC	100287102:XM_002342010.1:LOC100287102::::INTRON:UNKNOWN-INC				1.17	N
49	2	chr1	12244	12262	hom	ref	=	=	=											54						1.17	N
50	2	chr1	12262	12300	no-call	complex	=	?	?											-185						1.17	N
51	2	chr1	12300	12313	hom	ref	=	=	=											11						1.17	N
52	2	chr1	12313	12359	no-call	complex	=	?	?											-131						1.17	N
53	2	chr1	12359	12375	hom	ref	=	=	=											25						1.17	N
54	2	chr1	12375	12387	no-call	complex	=	?	?											-206						1.17	N
55	2	chr1	12387	12395	hom	ref	=	=	=											37						1.17	N
56	2	chr1	12395	12426	no-call	complex	=	?	?											-189						1.17	N
57	2	chr1	12426	12655	hom	ref	=	=	=											12						1.17	N
58	2	chr1	12655	12676	no-call	complex	=	?	?											-135						1.17	N
59	2	chr1	12676	12746	hom	ref	=	=	=											-2						1.17	N
60	2	chr1	12746	12758	no-call	complex	=	?	?											-94						1.17	N
61	2	chr1	12758	12768	hom	ref	=	=	=											25						1.17	N
62	2	chr1	12768	12810	no-call	complex	=	?	?											-446						1.17	N
63	2	chr1	12810	12850	hom	ref	=	=	=											42						1.17	N
64	2	chr1	12850	12858	no-call	complex	=	?	?											-152	100287102:XM_002342010.1:LOC100287102::::INTRON:UNKNOWN-INC	100287102:XM_002342010.1:LOC100287102::::INTRON:UNKNOWN-INC				1.17	N
65	2	chr1	12858	12920	hom	ref	=	=	=											11						1.17	N
66	2	chr1	12920	12951	no-call	complex	=	?	?											-31						1.17	N
67	2	chr1	12951	12978	hom	ref	=	=	=											75						1.17	N
68	2	chr1	12978	12998	no-call	complex	=	?	?											-32						1.17	N
69	2	chr1	12998	13075	hom	ref	=	=	=											33						1.17	N
70	2	chr1	13075	13124	no-call	complex	=	?	?											-109						1.17	N
71	2	chr1	13124	13172	hom	ref	=	=	=											25						1.17	N
72	2	chr1	13172	13182	no-call	complex	=	?	?											-338						1.17	N
73	2	chr1	13182	13280	hom	ref	=	=	=											35						1.17	N
74	2	chr1	13280	13287	no-call	complex	=	?	?											-104	100287102:XM_002342010.1:LOC100287102::::INTRON:UNKNOWN-INC	100287102:XM_002342010.1:LOC100287102::::INTRON:UNKNOWN-INC				1.17	N
75	2	chr1	13287	13297	hom	ref	=	=	=											41						1.17	N
76	2	chr1	13297	13338	no-call	complex	=	?	?											-325						1.17	N
77	2	chr1	13338	13355	hom	ref	=	=	=											19						1.17	N
78	2	chr1	13355	13371	no-call	complex	=	?	?											-287						1.17	N
79	2	chr1	13371	13414	hom	ref	=	=	=											23						1.17	N
80	2	chr1	13414	13432	no-call	complex	=	?	?											-464						1.17	N
81	2	chr1	13432	13476	hom	ref	=	=	=											50						1.17	N
82	2	chr1	13476	13507	no-call	complex	=	?	?											-83						1.17	N
83	2	chr1	13507	13609	hom	ref	=	=	=											14						1.17	N
84	2	chr1	13609	13616	no-call	complex	=	?	?											-84	100287102:XM_002342010.1:LOC100287102::::CDS:UNKNOWN-VNC	100287102:XM_002342010.1:LOC100287102::::CDS:UNKNOWN-VNC				1.17	N
85	2	chr1	13616	13653	hom	ref	=	=	=											28						1.17	N
86	2	chr1	13653	13687	no-call	complex	=	?	?											-379						1.17	N
87	2	chr1	13687	13773	hom	ref	=	=	=											22						1.17	N
88	2	chr1	13773	13802	no-call	complex	=	?	?											-5						1.17	N
89	2	chr1	13802	13809	hom	ref	=	=	=											66						1.17	N
90	2	chr1	13809	13841	no-call	complex	=	?	?											-274						1.17	N
91	2	chr1	13841	13858	hom	ref	=	=	=											48						1.17	N
92	2	chr1	13858	13865	no-call	complex	=	?	?											-59	100287102:XM_002342010.1:LOC100287102::::UTR3:UNKNOWN-INC	100287102:XM_002342010.1:LOC100287102::::UTR3:UNKNOWN-INC				1.17	N
93	2	chr1	13865	13942	hom	ref	=	=	=											14						1.17	N
94	2	chr1	13942	13986	no-call	complex	=	?	?											-711						1.17	N
95	2	chr1	13986	14111	hom	ref	=	=	=											9						1.17	N
96	2	chr1	14111	14118	no-call	complex	=	?	?											-281	100287102:XM_002342010.1:LOC100287102::::UTR3:UNKNOWN-INC	100287102:XM_002342010.1:LOC100287102::::UTR3:UNKNOWN-INC				1.17	N
97	2	chr1	14118	14161	hom	ref	=	=	=											60						1.17	N
98	2	chr1	14161	14168	no-call	complex	=	?	?											-5	100287102:XM_002342010.1:LOC100287102::::UTR3:UNKNOWN-INC	100287102:XM_002342010.1:LOC100287102::::UTR3:UNKNOWN-INC				1.17	N
99	2	chr1	14168	14193	hom	ref	=	=	=											58						1.17	N
100	2	chr1	14193	14218	no-call	complex	=	?	?											-127						1.17	N
101	2	chr1	14218	14244	hom	ref	=	=	=											30						1.17	N
102	2	chr1	14244	14251	no-call	complex	=	?	?											-115	100287102:XM_002342010.1:LOC100287102::::UTR3:UNKNOWN-INC	100287102:XM_002342010.1:LOC100287102::::UTR3:UNKNOWN-INC				1.17	N
103	2	chr1	14251	14320	hom	ref	=	=	=											14						1.17	N
104	2	chr1	14320	14357	no-call	complex	=	?	?											-349						1.17	N
105	2	chr1	14357	14394	hom	ref	=	=	=											53						1.17	N
106	2	chr1	14394	14403	no-call	complex	=	?	?											22	100287102:XM_002342010.1:LOC100287102::::UTR3:UNKNOWN-INC;653635:NR_024540.1:WASH5P::::UTR:UNKNOWN-INC	100287102:XM_002342010.1:LOC100287102::::UTR3:UNKNOWN-INC;653635:NR_024540.1:WASH5P::::UTR:UNKNOWN-INC				1.17	N
107	2	chr1	14403	14431	hom	ref	=	=	=											64						1.17	N
108	2	chr1	14431	14461	no-call	complex	=	?	?											-250						1.17	N
109	2	chr1	14461	14509	hom	ref	=	=	=											14						1.17	N
110	2	chr1	14509	14553	no-call	complex	=	?	?											-284						1.17	N
111	2	chr1	14553	14573	hom	ref	=	=	=											-44						1.17	N
112	2	chr1	14573	14574	half	ref	A	A	N	121	121									-44	653635:NR_024540.1:WASH5P::::UTR:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::UTR:UNKNOWN-INC			7	1.17	N
113	2	chr1	14574	14600	hom	ref	=	=	=											-44						1.17	N
114	2	chr1	14600	14629	no-call	complex	=	?	?											-81						1.17	N
115	2	chr1	14629	14649	hom	ref	=	=	=											38						1.17	N
116	2	chr1	14649	14676	no-call	complex	=	?	?											-261						1.17	N
117	2	chr1	14676	14695	hom	ref	=	=	=											19						1.17	N
118	2	chr1	14695	14702	no-call	complex	=	?	?											-76	653635:NR_024540.1:WASH5P::::UTR:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::UTR:UNKNOWN-INC				1.17	N
119	2	chr1	14702	14811	hom	ref	=	=	=											23						1.17	N
120	2	chr1	14811	14857	no-call	complex	=	?	?											-193						1.17	N
121	2	chr1	14857	14888	hom	ref	=	=	=											26						1.17	N
122	2	chr1	14888	14910	no-call	complex	=	?	?											-354						1.17	N
123	2	chr1	14910	14926	hom	ref	=	=	=											107						1.17	N
124	2	chr1	14926	14940	no-call	complex	=	?	?											-297						1.17	N
125	2	chr1	14940	15009	hom	ref	=	=	=											28						1.17	N
126	2	chr1	15009	15032	no-call	complex	=	?	?											-256						1.17	N
127	2	chr1	15032	15041	hom	ref	=	=	=											56						1.17	N
128	2	chr1	15041	15056	no-call	complex	=	?	?											-221						1.17	N
129	2	chr1	15056	15114	hom	ref	=	=	=											22						1.17	N
130	2	chr1	15114	15121	no-call	complex	=	?	?											-402	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC				1.17	N
131	2	chr1	15121	15185	hom	ref	=	=	=											49						1.17	N
132	2	chr1	15185	15214	no-call	complex	=	?	?											-631						1.17	N
133	2	chr1	15214	15236	hom	ref	=	=	=											58						1.17	N
134	2	chr1	15236	15278	no-call	complex	=	?	?											-543						1.17	N
135	2	chr1	15278	15326	hom	ref	=	=	=											18						1.17	N
136	2	chr1	15326	15355	no-call	complex	=	?	?											-20						1.17	N
137	2	chr1	15355	15370	hom	ref	=	=	=											43						1.17	N
138	2	chr1	15370	15377	no-call	complex	=	?	?											-4	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC				1.17	N
139	2	chr1	15377	15421	hom	ref	=	=	=											44						1.17	N
140	2	chr1	15421	15454	no-call	complex	=	?	?											-136						1.17	N
141	2	chr1	15454	15515	hom	ref	=	=	=											20						1.17	N
142	2	chr1	15515	15548	no-call	complex	=	?	?											-113						1.17	N
143	2	chr1	15548	15588	hom	ref	=	=	=											21						1.17	N
144	2	chr1	15588	15598	no-call	complex	=	?	?											-29						1.17	N
145	2	chr1	15598	15684	hom	ref	=	=	=											24						1.17	N
146	2	chr1	15684	15721	no-call	complex	=	?	?											-173						1.17	N
147	2	chr1	15721	15765	hom	ref	=	=	=											12						1.17	N
148	2	chr1	15765	15780	no-call	complex	=	?	?											-70						1.17	N
149	2	chr1	15780	15813	hom	ref	=	=	=											23						1.17	N
150	2	chr1	15813	15847	no-call	complex	=	?	?											-163						1.17	N
151	2	chr1	15847	15865	hom	ref	=	=	=											17						1.17	N
152	2	chr1	15865	15873	no-call	complex	=	?	?											3	653635:NR_024540.1:WASH5P::::UTR:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::UTR:UNKNOWN-INC				1.17	N
153	2	chr1	15873	15899	hom	ref	=	=	=											14						1.17	N
154	2	chr1	15899	15926	no-call	complex	=	?	?											-101						1.17	N
155	2	chr1	15926	15952	hom	ref	=	=	=											20						1.17	N
156	2	chr1	15952	15959	no-call	complex	=	?	?											-95	653635:NR_024540.1:WASH5P::::ACCEPTOR:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::ACCEPTOR:UNKNOWN-INC				1.17	N
157	2	chr1	15959	15987	hom	ref	=	=	=											33						1.17	N
158	2	chr1	15987	16017	no-call	complex	=	?	?											-374						1.17	N
159	2	chr1	16017	16054	hom	ref	=	=	=											34						1.17	N
160	2	chr1	16054	16071	no-call	complex	=	?	?											-245						1.17	N
161	2	chr1	16071	16092	hom	ref	=	=	=											29						1.17	N
162	2	chr1	16092	16112	no-call	complex	=	?	?											-665						1.17	N
163	2	chr1	16112	16137	hom	ref	=	=	=											30						1.17	N
164	2	chr1	16137	16144	no-call	complex	=	?	?											-199	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC				1.17	N
165	2	chr1	16144	16202	hom	ref	=	=	=											31						1.17	N
166	2	chr1	16202	16232	no-call	complex	=	?	?											-434						1.17	N
167	2	chr1	16232	16283	hom	ref	=	=	=											35						1.17	N
168	2	chr1	16283	16316	no-call	complex	=	?	?											-279						1.17	N
169	2	chr1	16316	16344	hom	ref	=	=	=											37						1.17	N
170	2	chr1	16344	16382	no-call	complex	=	?	?											-1045						1.17	N
171	2	chr1	16382	16491	hom	ref	=	=	=											40						1.17	N
172	2	chr1	16491	16537	no-call	complex	=	?	?											-687						1.17	N
173	2	chr1	16537	16567	hom	ref	=	=	=											21						1.17	N
174	2	chr1	16567	16597	no-call	complex	=	?	?											-270						1.17	N
175	2	chr1	16597	16615	hom	ref	=	=	=											32						1.17	N
176	2	chr1	16615	16622	no-call	complex	=	?	?											5	653635:NR_024540.1:WASH5P::::UTR:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::UTR:UNKNOWN-INC				1.17	N
177	2	chr1	16622	16666	hom	ref	=	=	=											14						1.17	N
178	2	chr1	16666	16707	no-call	complex	=	?	?											-146						1.17	N
179	2	chr1	16707	16715	hom	ref	=	=	=											16						1.17	N
180	2	chr1	16715	16747	no-call	complex	=	?	?											-200						1.17	N
181	2	chr1	16747	16797	hom	ref	=	=	=											45						1.17	N
182	2	chr1	16797	16826	no-call	complex	=	?	?											-85						1.17	N
183	2	chr1	16826	16852	hom	ref	=	=	=											35						1.17	N
184	2	chr1	16852	16859	no-call	complex	=	?	?											-13	653635:NR_024540.1:WASH5P::::SPAN3:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::SPAN3:UNKNOWN-INC				1.17	N
185	2	chr1	16859	16896	hom	ref	=	=	=											14						1.17	N
186	2	chr1	16896	16903	no-call	complex	=	?	?											-41	653635:NR_024540.1:WASH5P::::UTR:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::UTR:UNKNOWN-INC				1.17	N
187	2	chr1	16903	16959	hom	ref	=	=	=											25						1.17	N
188	2	chr1	16959	16981	no-call	complex	=	?	?											-382						1.17	N
189	2	chr1	16981	16992	hom	ref	=	=	=											44						1.17	N
190	2	chr1	16992	17023	no-call	complex	=	?	?											-200						1.17	N
191	2	chr1	17023	17217	hom	ref	=	=	=											27						1.17	N
192	2	chr1	17217	17225	no-call	complex	=	?	?											-355	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC				1.17	N
193	2	chr1	17225	17371	hom	ref	=	=	=											-4						1.17	N
194	2	chr1	17371	17409	no-call	complex	=	?	?											-256						1.17	N
195	2	chr1	17409	17447	hom	ref	=	=	=											42						1.17	N
196	2	chr1	17447	17454	no-call	complex	=	?	?											-64	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC				1.17	N
197	2	chr1	17454	17498	hom	ref	=	=	=											19						1.17	N
198	2	chr1	17498	17505	no-call	complex	=	?	?											-158	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC				1.17	N
199	2	chr1	17505	17534	hom	ref	=	=	=											69						1.17	N
200	2	chr1	17534	17566	no-call	complex	=	?	?											-116						1.17	N
201	2	chr1	17566	17590	hom	ref	=	=	=											22						1.17	N
202	2	chr1	17590	17597	no-call	complex	=	?	?											-26	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC				1.17	N
203	2	chr1	17597	17657	hom	ref	=	=	=											33						1.17	N
204	2	chr1	17657	17698	no-call	complex	=	?	?											-30						1.17	N
205	2	chr1	17698	17712	hom	ref	=	=	=											21						1.17	N
206	2	chr1	17712	17756	no-call	complex	=	?	?											-171						1.17	N
207	2	chr1	17756	17761	hom	ref	=	=	=											41						1.17	N
208	2	chr1	17761	17768	no-call	complex	=	?	?											-69	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC				1.17	N
209	2	chr1	17768	17801	hom	ref	=	=	=											66						1.17	N
210	2	chr1	17801	17808	no-call	complex	=	?	?											-64	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC				1.17	N
211	2	chr1	17808	17839	hom	ref	=	=	=											39						1.17	N
212	2	chr1	17839	17846	no-call	complex	=	?	?											3	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC				1.17	N
213	2	chr1	17846	17923	hom	ref	=	=	=											-6						1.17	N
214	2	chr1	17923	17924	half	ref	C	C	N	85	85	109	110							-6	653635:NR_024540.1:WASH5P::::UTR:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::UTR:UNKNOWN-INC			7	1.17	N
215	2	chr1	17924	17929	hom	ref	=	=	=											-6						1.17	N
216	2	chr1	17929	17930	half	ref	G	G	N	85	85	109	110							8	653635:NR_024540.1:WASH5P::::UTR:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::UTR:UNKNOWN-INC			7	1.17	N
217	2	chr1	17930	17934	hom	ref	=	=	=											-15						1.17	N
218	2	chr1	17934	17934	half	ref			?	25	0	109	110							-15	653635:NR_024540.1:WASH5P::::UTR:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::UTR:UNKNOWN-INC			7	1.17	N
219	2	chr1	17934	17959	hom	ref	=	=	=											-101						1.17	N
220	2	chr1	17959	17972	no-call	complex	=	?	?											-184						1.17	N
221	2	chr1	17972	17995	hom	ref	=	=	=											26						1.17	N
222	2	chr1	17995	18033	no-call	complex	=	?	?											-115						1.17	N
223	2	chr1	18033	18087	hom	ref	=	=	=											28						1.17	N
224	2	chr1	18087	18097	no-call	complex	=	?	?											-264						1.17	N
225	2	chr1	18097	18139	hom	ref	=	=	=											46						1.17	N
226	2	chr1	18139	18167	no-call	complex	=	?	?											-204						1.17	N
227	2	chr1	18167	18182	hom	ref	=	=	=											48						1.17	N
228	2	chr1	18182	18204	no-call	complex	=	?	?											-444						1.17	N
229	2	chr1	18204	18220	hom	ref	=	=	=											22						1.17	N
230	2	chr1	18220	18259	no-call	complex	=	?	?											-322						1.17	N
231	2	chr1	18259	18339	hom	ref	=	=	=											2						1.17	N
232	2	chr1	18339	18375	no-call	complex	=	?	?											-244						1.17	N
233	2	chr1	18375	18414	hom	ref	=	=	=											53						1.17	N
234	2	chr1	18414	18425	no-call	complex	=	?	?											-82						1.17	N
235	2	chr1	18425	18437	hom	ref	=	=	=											19						1.17	N
236	2	chr1	18437	18477	no-call	complex	=	?	?											-53						1.17	N
237	2	chr1	18477	18495	hom	ref	=	=	=											11						1.17	N
238	2	chr1	18495	18502	no-call	complex	=	?	?											-82	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC				1.17	N
239	2	chr1	18502	18561	hom	ref	=	=	=											20						1.17	N
240	2	chr1	18561	18592	no-call	complex	=	?	?											-264						1.17	N
241	2	chr1	18592	18627	hom	ref	=	=	=											37						1.17	N
242	2	chr1	18627	18665	no-call	complex	=	?	?											-351						1.17	N
243	2	chr1	18665	18707	hom	ref	=	=	=											13						1.17	N
244	2	chr1	18707	18714	no-call	complex	=	?	?											-243	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC				1.17	N
245	2	chr1	18714	18729	hom	ref	=	=	=											15						1.17	N
246	2	chr1	18729	18765	no-call	complex	=	?	?											-262						1.17	N
247	2	chr1	18765	18823	hom	ref	=	=	=											0						1.17	N
248	2	chr1	18823	18830	no-call	complex	=	?	?											-84	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC				1.17	N
249	2	chr1	18830	18842	hom	ref	=	=	=											15						1.17	N
250	2	chr1	18842	18884	no-call	complex	=	?	?											-168						1.17	N
251	2	chr1	18884	18930	hom	ref	=	=	=											4						1.17	N
252	2	chr1	18930	18958	no-call	complex	=	?	?											-146						1.17	N
253	2	chr1	18958	19000	hom	ref	=	=	=											23						1.17	N
254	2	chr1	19000	19008	no-call	complex	=	?	?											-501	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC				1.17	N
255	2	chr1	19008	19047	hom	ref	=	=	=											37						1.17	N
256	2	chr1	19047	19054	no-call	complex	=	?	?											-85	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC				1.17	N
257	2	chr1	19054	19129	hom	ref	=	=	=											20						1.17	N
258	2	chr1	19129	19136	no-call	complex	=	?	?											-188	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC				1.17	N
259	2	chr1	19136	19156	hom	ref	=	=	=											49						1.17	N
260	2	chr1	19156	19198	no-call	complex	=	?	?											-33						1.17	N
261	2	chr1	19198	19213	hom	ref	=	=	=											15						1.17	N
262	2	chr1	19213	19220	no-call	complex	=	?	?											-83	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC				1.17	N
263	2	chr1	19220	19244	hom	ref	=	=	=											14						1.17	N
264	2	chr1	19244	19291	no-call	complex	=	?	?											-95						1.17	N
265	2	chr1	19291	19302	hom	ref	=	=	=											27						1.17	N
266	2	chr1	19302	19352	no-call	complex	=	?	?											-126						1.17	N
267	2	chr1	19352	19387	hom	ref	=	=	=											21						1.17	N
268	2	chr1	19387	19435	no-call	complex	=	?	?											-297						1.17	N
269	2	chr1	19435	19579	hom	ref	=	=	=											-22						1.17	N
270	2	chr1	19579	19604	no-call	complex	=	?	?											-244						1.17	N
271	2	chr1	19604	19636	hom	ref	=	=	=											23						1.17	N
272	2	chr1	19636	19643	no-call	complex	=	?	?											-118	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC				1.17	N
273	2	chr1	19643	19768	hom	ref	=	=	=											12						1.17	N
274	2	chr1	19768	19791	no-call	complex	=	?	?											-91						1.17	N
275	2	chr1	19791	19854	hom	ref	=	=	=											26						1.17	N
276	2	chr1	19854	19875	no-call	complex	=	?	?											-569						1.17	N
277	2	chr1	19875	19914	hom	ref	=	=	=											30						1.17	N
278	2	chr1	19914	19928	no-call	complex	=	?	?											-145						1.17	N
279	2	chr1	19928	20003	hom	ref	=	=	=											34						1.17	N
280	2	chr1	20003	20027	no-call	complex	=	?	?											-84						1.17	N
281	2	chr1	20027	20040	hom	ref	=	=	=											62						1.17	N
282	2	chr1	20040	20053	no-call	complex	=	?	?											-139						1.17	N
283	2	chr1	20053	20154	hom	ref	=	=	=											18						1.17	N
284	2	chr1	20154	20169	no-call	complex	=	?	?											-375						1.17	N
285	2	chr1	20169	20187	hom	ref	=	=	=											19						1.17	N
286	2	chr1	20187	20230	no-call	complex	=	?	?											-236						1.17	N
287	2	chr1	20230	20241	hom	ref	=	=	=											77						1.17	N
288	2	chr1	20241	20265	no-call	complex	=	?	?											-224						1.17	N
289	2	chr1	20265	20300	hom	ref	=	=	=											22						1.17	N
290	2	chr1	20300	20325	no-call	complex	=	?	?											-1402						1.17	N
291	2	chr1	20325	20463	hom	ref	=	=	=											-39						1.17	N
292	2	chr1	20463	20470	no-call	complex	=	?	?											-757	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC				1.17	N
293	2	chr1	20470	20494	hom	ref	=	=	=											83						1.17	N
294	2	chr1	20494	20515	no-call	complex	=	?	?											-545						1.17	N
295	2	chr1	20515	20543	hom	ref	=	=	=											75						1.17	N
296	2	chr1	20543	20555	no-call	complex	=	?	?											-153						1.17	N
297	2	chr1	20555	20594	hom	ref	=	=	=											-31						1.17	N
298	2	chr1	20594	20595	half	ref	A	A	N	32	120									-31	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC		Plat_L3:CR1:36.5	5	1.17	N
299	2	chr1	20595	20707	hom	ref	=	=	=											-33						1.17	N
300	2	chr1	20707	20732	no-call	complex	=	?	?											-535						1.17	N
301	2	chr1	20732	20800	hom	ref	=	=	=											18						1.17	N
302	2	chr1	20800	20816	no-call	complex	=	?	?											-227						1.17	N
303	2	chr1	20816	20858	hom	ref	=	=	=											16						1.17	N
304	2	chr1	20858	20869	no-call	complex	=	?	?											-209						1.17	N
305	2	chr1	20869	20910	hom	ref	=	=	=											10						1.17	N
306	2	chr1	20910	20938	no-call	complex	=	?	?											-442						1.17	N
307	2	chr1	20938	20956	hom	ref	=	=	=											48						1.17	N
308	2	chr1	20956	20963	no-call	complex	=	?	?											-310	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC				1.17	N
309	2	chr1	20963	21006	hom	ref	=	=	=											15						1.17	N
310	2	chr1	21006	21039	no-call	complex	=	?	?											-182						1.17	N
311	2	chr1	21039	21045	hom	ref	=	=	=											29						1.17	N
312	2	chr1	21045	21052	no-call	complex	=	?	?											-26	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC				1.17	N
313	2	chr1	21052	21089	hom	ref	=	=	=											19						1.17	N
314	2	chr1	21089	21124	no-call	complex	=	?	?											-321						1.17	N
315	2	chr1	21124	21148	hom	ref	=	=	=											17						1.17	N
316	2	chr1	21148	21183	no-call	complex	=	?	?											-113						1.17	N
317	2	chr1	21183	21220	hom	ref	=	=	=											29						1.17	N
318	2	chr1	21220	21227	no-call	complex	=	?	?											-209	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC				1.17	N
319	2	chr1	21227	21302	hom	ref	=	=	=											19						1.17	N
320	2	chr1	21302	21355	no-call	complex	=	?	?											-312						1.17	N
321	2	chr1	21355	21382	hom	ref	=	=	=											36						1.17	N
322	2	chr1	21382	21434	no-call	complex	=	?	?											-109						1.17	N
323	2	chr1	21434	21460	hom	ref	=	=	=											38						1.17	N
324	2	chr1	21460	21483	no-call	complex	=	?	?											-271						1.17	N
325	2	chr1	21483	21499	hom	ref	=	=	=											43						1.17	N
326	2	chr1	21499	21518	no-call	complex	=	?	?											-386						1.17	N
327	2	chr1	21518	21558	hom	ref	=	=	=											53						1.17	N
328	2	chr1	21558	21586	no-call	complex	=	?	?											-91						1.17	N
329	2	chr1	21586	21711	hom	ref	=	=	=											14						1.17	N
330	2	chr1	21711	21718	no-call	complex	=	?	?											-72	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC				1.17	N
331	2	chr1	21718	21759	hom	ref	=	=	=											21						1.17	N
332	2	chr1	21759	21799	no-call	complex	=	?	?											-452						1.17	N
333	2	chr1	21799	21836	hom	ref	=	=	=											26						1.17	N
334	2	chr1	21836	21877	no-call	complex	=	?	?											-451						1.17	N
335	2	chr1	21877	21987	hom	ref	=	=	=											26						1.17	N
336	2	chr1	21987	22028	no-call	complex	=	?	?											-588						1.17	N
337	2	chr1	22028	22065	hom	ref	=	=	=											37						1.17	N
338	2	chr1	22065	22073	no-call	complex	=	?	?											-385	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC				1.17	N
339	2	chr1	22073	22085	hom	ref	=	=	=											47						1.17	N
340	2	chr1	22085	22117	no-call	complex	=	?	?											-460						1.17	N
341	2	chr1	22117	22153	hom	ref	=	=	=											14						1.17	N
342	2	chr1	22153	22181	no-call	complex	=	?	?											-75						1.17	N
343	2	chr1	22181	22191	hom	ref	=	=	=											12						1.17	N
344	2	chr1	22191	22198	no-call	complex	=	?	?											-134	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC				1.17	N
345	2	chr1	22198	22214	hom	ref	=	=	=											23						1.17	N
346	2	chr1	22214	22252	no-call	complex	=	?	?											-92						1.17	N
347	2	chr1	22252	22295	hom	ref	=	=	=											11						1.17	N
348	2	chr1	22295	22312	no-call	complex	=	?	?											-215						1.17	N
349	2	chr1	22312	22346	hom	ref	=	=	=											56						1.17	N
350	2	chr1	22346	22353	no-call	complex	=	?	?											-34	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC				1.17	N
351	2	chr1	22353	22371	hom	ref	=	=	=											47						1.17	N
352	2	chr1	22371	22414	no-call	complex	=	?	?											-88						1.17	N
353	2	chr1	22414	22463	hom	ref	=	=	=											34						1.17	N
354	2	chr1	22463	22497	no-call	complex	=	?	?											-226						1.17	N
355	2	chr1	22497	22525	hom	ref	=	=	=											32						1.17	N
356	2	chr1	22525	22536	no-call	complex	=	?	?											-274						1.17	N
357	2	chr1	22536	22650	hom	ref	=	=	=											15						1.17	N
358	2	chr1	22650	22690	no-call	complex	=	?	?											-246						1.17	N
359	2	chr1	22690	22741	hom	ref	=	=	=											34						1.17	N
360	2	chr1	22741	22761	no-call	complex	=	?	?											-103						1.17	N
361	2	chr1	22761	22768	hom	ref	=	=	=											38						1.17	N
362	2	chr1	22768	22775	no-call	complex	=	?	?											-31	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC				1.17	N
363	2	chr1	22775	22821	hom	ref	=	=	=											25						1.17	N
364	2	chr1	22821	22877	no-call	complex	=	?	?											-470						1.17	N
365	2	chr1	22877	22894	hom	ref	=	=	=											38						1.17	N
366	2	chr1	22894	22902	no-call	complex	=	?	?											-411	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC				1.17	N
367	2	chr1	22902	22944	hom	ref	=	=	=											24						1.17	N
368	2	chr1	22944	22983	no-call	complex	=	?	?											-552						1.17	N
369	2	chr1	22983	22991	hom	ref	=	=	=											16						1.17	N
370	2	chr1	22991	23033	no-call	complex	=	?	?											-244						1.17	N
371	2	chr1	23033	23043	hom	ref	=	=	=											54						1.17	N
372	2	chr1	23043	23076	no-call	complex	=	?	?											-559						1.17	N
373	2	chr1	23076	23093	hom	ref	=	=	=											36						1.17	N
374	2	chr1	23093	23129	no-call	complex	=	?	?											-275						1.17	N
375	2	chr1	23129	23170	hom	ref	=	=	=											50						1.17	N
376	2	chr1	23170	23206	no-call	complex	=	?	?											-162						1.17	N
377	2	chr1	23206	23238	hom	ref	=	=	=											29						1.17	N
378	2	chr1	23238	23281	no-call	complex	=	?	?											-498						1.17	N
379	2	chr1	23281	23287	hom	ref	=	=	=											51						1.17	N
380	2	chr1	23287	23295	no-call	complex	=	?	?											-478	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC				1.17	N
381	2	chr1	23295	23338	hom	ref	=	=	=											37						1.17	N
382	2	chr1	23338	23382	no-call	complex	=	?	?											-328						1.17	N
383	2	chr1	23382	23389	hom	ref	=	=	=											12						1.17	N
384	2	chr1	23389	23422	no-call	complex	=	?	?											-42						1.17	N
385	2	chr1	23422	23469	hom	ref	=	=	=											-22						1.17	N
386	2	chr1	23469	23470	half	ref	A	A	N	80	121									-22	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC			5	1.17	N
387	2	chr1	23470	23502	hom	ref	=	=	=											-22						1.17	N
388	2	chr1	23502	23541	no-call	complex	=	?	?											-394						1.17	N
389	2	chr1	23541	23555	hom	ref	=	=	=											29						1.17	N
390	2	chr1	23555	23587	no-call	complex	=	?	?											-297						1.17	N
391	2	chr1	23587	23642	hom	ref	=	=	=											31						1.17	N
392	2	chr1	23642	23672	no-call	complex	=	?	?											-823						1.17	N
393	2	chr1	23672	23692	hom	ref	=	=	=											34						1.17	N
394	2	chr1	23692	23740	no-call	complex	=	?	?											-141						1.17	N
395	2	chr1	23740	23775	hom	ref	=	=	=											32						1.17	N
396	2	chr1	23775	23814	no-call	complex	=	?	?											-126						1.17	N
397	2	chr1	23814	23843	hom	ref	=	=	=											27						1.17	N
398	2	chr1	23843	23874	no-call	complex	=	?	?											-176						1.17	N
399	2	chr1	23874	23926	hom	ref	=	=	=											14						1.17	N
400	2	chr1	23926	23933	no-call	complex	=	?	?											-51	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC				1.17	N
401	2	chr1	23933	23971	hom	ref	=	=	=											27						1.17	N
402	2	chr1	23971	23979	no-call	complex	=	?	?											-89	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC				1.17	N
403	2	chr1	23979	24030	hom	ref	=	=	=											23						1.17	N
404	2	chr1	24030	24077	no-call	complex	=	?	?											-212						1.17	N
405	2	chr1	24077	24094	hom	ref	=	=	=											65						1.17	N
406	2	chr1	24094	24117	no-call	complex	=	?	?											-404						1.17	N
407	2	chr1	24117	24124	hom	ref	=	=	=											22						1.17	N
408	2	chr1	24124	24169	no-call	complex	=	?	?											-119						1.17	N
409	2	chr1	24169	24189	hom	ref	=	=	=											27						1.17	N
410	2	chr1	24189	24200	no-call	complex	=	?	?											-348						1.17	N
411	2	chr1	24200	24214	hom	ref	=	=	=											44						1.17	N
412	2	chr1	24214	24248	no-call	complex	=	?	?											-83						1.17	N
413	2	chr1	24248	24257	hom	ref	=	=	=											42						1.17	N
414	2	chr1	24257	24283	no-call	complex	=	?	?											-277						1.17	N
415	2	chr1	24283	24298	hom	ref	=	=	=											36						1.17	N
416	2	chr1	24298	24315	no-call	complex	=	?	?											-813						1.17	N
417	2	chr1	24315	24343	hom	ref	=	=	=											51						1.17	N
418	2	chr1	24343	24365	no-call	complex	=	?	?											-279						1.17	N
419	2	chr1	24365	24415	hom	ref	=	=	=											22						1.17	N
420	2	chr1	24415	24454	no-call	complex	=	?	?											-749						1.17	N
421	2	chr1	24454	24483	hom	ref	=	=	=											12						1.17	N
422	2	chr1	24483	24490	no-call	complex	=	?	?											-373	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC				1.17	N
423	2	chr1	24490	24507	hom	ref	=	=	=											11						1.17	N
424	2	chr1	24507	24539	no-call	complex	=	?	?											-270						1.17	N
425	2	chr1	24539	24605	hom	ref	=	=	=											22						1.17	N
426	2	chr1	24605	24620	no-call	complex	=	?	?											-101						1.17	N
427	2	chr1	24620	24634	hom	ref	=	=	=											10						1.17	N
428	2	chr1	24634	24659	no-call	complex	=	?	?											-302						1.17	N
429	2	chr1	24659	24681	hom	ref	=	=	=											6						1.17	N
430	2	chr1	24681	24682	half	ref	A	A	N	52	116									6	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC			5	1.17	N
431	2	chr1	24682	24719	hom	ref	=	=	=											6						1.17	N
432	2	chr1	24719	24742	no-call	complex	=	?	?											-75						1.17	N
433	2	chr1	24742	24750	hom	ref	=	=	=											15						1.17	N
434	2	chr1	24750	24757	no-call	complex	=	?	?											-215	653635:NR_024540.1:WASH5P::::UTR:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::UTR:UNKNOWN-INC				1.17	N
435	2	chr1	24757	24773	hom	ref	=	=	=											11						1.17	N
436	2	chr1	24773	24801	no-call	complex	=	?	?											-144						1.17	N
437	2	chr1	24801	24807	hom	ref	=	=	=											16						1.17	N
438	2	chr1	24807	24835	no-call	complex	=	?	?											-99						1.17	N
439	2	chr1	24835	24896	hom	ref	=	=	=											12						1.17	N
440	2	chr1	24896	24945	no-call	complex	=	?	?											-141						1.17	N
441	2	chr1	24945	25060	hom	ref	=	=	=											8						1.17	N
442	2	chr1	25060	25085	no-call	complex	=	?	?											-240						1.17	N
443	2	chr1	25085	25103	hom	ref	=	=	=											16						1.17	N
444	2	chr1	25103	25119	no-call	complex	=	?	?											-272						1.17	N
445	2	chr1	25119	25149	hom	ref	=	=	=											11						1.17	N
446	2	chr1	25149	25156	no-call	complex	=	?	?											-475	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC				1.17	N
447	2	chr1	25156	25214	hom	ref	=	=	=											47						1.17	N
448	2	chr1	25214	25231	no-call	complex	=	?	?											-295						1.17	N
449	2	chr1	25231	25268	hom	ref	=	=	=											36						1.17	N
450	2	chr1	25268	25282	no-call	complex	=	?	?											-11						1.17	N
451	2	chr1	25282	25309	hom	ref	=	=	=											36						1.17	N
452	2	chr1	25309	25321	no-call	complex	=	?	?											-507						1.17	N
453	2	chr1	25321	25342	hom	ref	=	=	=											44						1.17	N
454	2	chr1	25342	25368	no-call	complex	=	?	?											-514						1.17	N
455	2	chr1	25368	25392	hom	ref	=	=	=											39						1.17	N
456	2	chr1	25392	25421	no-call	complex	=	?	?											-63						1.17	N
457	2	chr1	25421	25495	hom	ref	=	=	=											22						1.17	N
458	2	chr1	25495	25536	no-call	complex	=	?	?											-145						1.17	N
459	2	chr1	25536	25556	hom	ref	=	=	=											61						1.17	N
460	2	chr1	25556	25571	no-call	complex	=	?	?											-472						1.17	N
461	2	chr1	25571	25697	hom	ref	=	=	=											4						1.17	N
462	2	chr1	25697	25736	no-call	complex	=	?	?											-47						1.17	N
463	2	chr1	25736	25770	hom	ref	=	=	=											16						1.17	N
464	2	chr1	25770	25780	no-call	complex	=	?	?											-87						1.17	N
465	2	chr1	25780	25872	hom	ref	=	=	=											16						1.17	N
466	2	chr1	25872	25879	no-call	complex	=	?	?											-136	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC				1.17	N
467	2	chr1	25879	25930	hom	ref	=	=	=											37						1.17	N
468	2	chr1	25930	25937	no-call	complex	=	?	?											-645	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC				1.17	N
469	2	chr1	25937	25956	hom	ref	=	=	=											11						1.17	N
470	2	chr1	25956	25999	no-call	complex	=	?	?											-107						1.17	N
471	2	chr1	25999	26006	hom	ref	=	=	=											18						1.17	N
472	2	chr1	26006	26018	no-call	complex	=	?	?											-483						1.17	N
473	2	chr1	26018	26032	hom	ref	=	=	=											24						1.17	N
474	2	chr1	26032	26065	no-call	complex	=	?	?											-176						1.17	N
475	2	chr1	26065	26157	hom	ref	=	=	=											25						1.17	N
476	2	chr1	26157	26164	no-call	complex	=	?	?											-124	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC				1.17	N
477	2	chr1	26164	26212	hom	ref	=	=	=											32						1.17	N
478	2	chr1	26212	26228	no-call	complex	=	?	?											-139						1.17	N
479	2	chr1	26228	26247	hom	ref	=	=	=											37						1.17	N
480	2	chr1	26247	26289	no-call	complex	=	?	?											-231						1.17	N
481	2	chr1	26289	26338	hom	ref	=	=	=											13						1.17	N
482	2	chr1	26338	26361	no-call	complex	=	?	?											-415						1.17	N
483	2	chr1	26361	26420	hom	ref	=	=	=											11						1.17	N
484	2	chr1	26420	26465	no-call	complex	=	?	?											-293						1.17	N
485	2	chr1	26465	26500	hom	ref	=	=	=											11						1.17	N
486	2	chr1	26500	26525	no-call	complex	=	?	?											-450						1.17	N
487	2	chr1	26525	26560	hom	ref	=	=	=											43						1.17	N
488	2	chr1	26560	26567	no-call	complex	=	?	?											-397	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC				1.17	N
489	2	chr1	26567	26594	hom	ref	=	=	=											32						1.17	N
490	2	chr1	26594	26617	no-call	complex	=	?	?											-329						1.17	N
491	2	chr1	26617	26696	hom	ref	=	=	=											26						1.17	N
492	2	chr1	26696	26715	no-call	complex	=	?	?											-129						1.17	N
493	2	chr1	26715	26735	hom	ref	=	=	=											32						1.17	N
494	2	chr1	26735	26769	no-call	complex	=	?	?											-368						1.17	N
495	2	chr1	26769	26790	hom	ref	=	=	=											40						1.17	N
496	2	chr1	26790	26806	no-call	complex	=	?	?											-343						1.17	N
497	2	chr1	26806	26834	hom	ref	=	=	=											18						1.17	N
498	2	chr1	26834	26854	no-call	complex	=	?	?											-343						1.17	N
499	2	chr1	26854	26866	hom	ref	=	=	=											45						1.17	N
500	2	chr1	26866	26893	no-call	complex	=	?	?											-469						1.17	N
501	2	chr1	26893	26925	hom	ref	=	=	=											40						1.17	N
502	2	chr1	26925	26971	no-call	complex	=	?	?											-690						1.17	N
503	2	chr1	26971	26978	hom	ref	=	=	=											29						1.17	N
504	2	chr1	26978	27062	no-call	complex	=	?	?											-137						1.17	N
505	2	chr1	27062	27102	hom	ref	=	=	=											40						1.17	N
506	2	chr1	27102	27109	no-call	complex	=	?	?											-397	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC				1.17	N
507	2	chr1	27109	27134	hom	ref	=	=	=											53						1.17	N
508	2	chr1	27134	27157	no-call	complex	=	?	?											-491						1.17	N
509	2	chr1	27157	27172	hom	ref	=	=	=											57						1.17	N
510	2	chr1	27172	27199	no-call	complex	=	?	?											-534						1.17	N
511	2	chr1	27199	27217	hom	ref	=	=	=											46						1.17	N
512	2	chr1	27217	27243	no-call	complex	=	?	?											-70						1.17	N
513	2	chr1	27243	27312	hom	ref	=	=	=											26						1.17	N
514	2	chr1	27312	27334	no-call	complex	=	?	?											-211						1.17	N
515	2	chr1	27334	27360	hom	ref	=	=	=											37						1.17	N
516	2	chr1	27360	27410	no-call	complex	=	?	?											-206						1.17	N
517	2	chr1	27410	27416	hom	ref	=	=	=											23						1.17	N
518	2	chr1	27416	27445	no-call	complex	=	?	?											-114						1.17	N
519	2	chr1	27445	27485	hom	ref	=	=	=											18						1.17	N
520	2	chr1	27485	27492	no-call	complex	=	?	?											-209	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC				1.17	N
521	2	chr1	27492	27524	hom	ref	=	=	=											18						1.17	N
522	2	chr1	27524	27543	no-call	complex	=	?	?											-169						1.17	N
523	2	chr1	27543	27550	hom	ref	=	=	=											68						1.17	N
524	2	chr1	27550	27577	no-call	complex	=	?	?											-569						1.17	N
525	2	chr1	27577	27592	hom	ref	=	=	=											14						1.17	N
526	2	chr1	27592	27636	no-call	complex	=	?	?											-243						1.17	N
527	2	chr1	27636	27652	hom	ref	=	=	=											22						1.17	N
528	2	chr1	27652	27672	no-call	complex	=	?	?											-216						1.17	N
529	2	chr1	27672	27719	hom	ref	=	=	=											25						1.17	N
530	2	chr1	27719	27729	no-call	complex	=	?	?											-418						1.17	N
531	2	chr1	27729	27776	hom	ref	=	=	=											18						1.17	N
532	2	chr1	27776	27826	no-call	complex	=	?	?											-290						1.17	N
533	2	chr1	27826	27839	hom	ref	=	=	=											56						1.17	N
534	2	chr1	27839	27888	no-call	complex	=	?	?											-236						1.17	N
535	2	chr1	27888	27903	hom	ref	=	=	=											22						1.17	N
536	2	chr1	27903	27931	no-call	complex	=	?	?											-395						1.17	N
537	2	chr1	27931	27956	hom	ref	=	=	=											15						1.17	N
538	2	chr1	27956	27972	no-call	complex	=	?	?											-126						1.17	N
539	2	chr1	27972	27986	hom	ref	=	=	=											19						1.17	N
540	2	chr1	27986	28023	no-call	complex	=	?	?											-506						1.17	N
541	2	chr1	28023	28049	hom	ref	=	=	=											69						1.17	N
542	2	chr1	28049	28088	no-call	complex	=	?	?											-804						1.17	N
543	2	chr1	28088	28109	hom	ref	=	=	=											63						1.17	N
544	2	chr1	28109	28140	no-call	complex	=	?	?											-250						1.17	N
545	2	chr1	28140	28172	hom	ref	=	=	=											27						1.17	N
546	2	chr1	28172	28217	no-call	complex	=	?	?											-303						1.17	N
547	2	chr1	28217	28242	hom	ref	=	=	=											26						1.17	N
548	2	chr1	28242	28259	no-call	complex	=	?	?											-213						1.17	N
549	2	chr1	28259	28323	hom	ref	=	=	=											4						1.17	N
550	2	chr1	28323	28357	no-call	complex	=	?	?											-639						1.17	N
551	2	chr1	28357	28372	hom	ref	=	=	=											13						1.17	N
552	2	chr1	28372	28379	no-call	complex	=	?	?											-577	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC				1.17	N
553	2	chr1	28379	28402	hom	ref	=	=	=											46						1.17	N
554	2	chr1	28402	28444	no-call	complex	=	?	?											-198						1.17	N
555	2	chr1	28444	28469	hom	ref	=	=	=											15						1.17	N
556	2	chr1	28469	28514	no-call	complex	=	?	?											-834						1.17	N
557	2	chr1	28514	28534	hom	ref	=	=	=											60						1.17	N
558	2	chr1	28534	28545	no-call	complex	=	?	?											-387						1.17	N
559	2	chr1	28545	28554	hom	ref	=	=	=											50						1.17	N
560	2	chr1	28554	28625	no-call	complex	=	?	?											-490						1.17	N
561	2	chr1	28625	28659	hom	ref	=	=	=											17						1.17	N
562	2	chr1	28659	28697	no-call	complex	=	?	?											-286						1.17	N
563	2	chr1	28697	28747	hom	ref	=	=	=											32						1.17	N
564	2	chr1	28747	28773	no-call	complex	=	?	?											-349						1.17	N
565	2	chr1	28773	28801	hom	ref	=	=	=											57						1.17	N
566	2	chr1	28801	28840	no-call	complex	=	?	?											-189						1.17	N
567	2	chr1	28840	28859	hom	ref	=	=	=											20						1.17	N
568	2	chr1	28859	28878	no-call	complex	=	?	?											-240						1.17	N
569	2	chr1	28878	28922	hom	ref	=	=	=											4						1.17	N
570	2	chr1	28922	28923	half	ref	T	T	N	38	119									4	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC			5	1.17	N
571	2	chr1	28923	28941	hom	ref	=	=	=											4						1.17	N
572	2	chr1	28941	28991	no-call	complex	=	?	?											-34						1.17	N
573	2	chr1	28991	29013	hom	ref	=	=	=											-39						1.17	N
574	2	chr1	29013	29014	half	ref	G	G	N	120	120									-39	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::INTRON:UNKNOWN-INC			5	1.17	N
575	2	chr1	29014	29059	hom	ref	=	=	=											-39						1.17	N
576	2	chr1	29059	29094	no-call	complex	=	?	?											-151						1.17	N
577	2	chr1	29094	29121	hom	ref	=	=	=											13						1.17	N
578	2	chr1	29121	29193	no-call	complex	=	?	?											-173						1.17	N
579	2	chr1	29193	29252	hom	ref	=	=	=											4						1.17	N
580	2	chr1	29252	29289	no-call	complex	=	?	?											-167						1.17	N
581	2	chr1	29289	29312	hom	ref	=	=	=											17						1.17	N
582	2	chr1	29312	29328	no-call	complex	=	?	?											-79						1.17	N
583	2	chr1	29328	29341	hom	ref	=	=	=											26						1.17	N
584	2	chr1	29341	29373	no-call	complex	=	?	?											-21						1.17	N
585	2	chr1	29373	29389	hom	ref	=	=	=											27						1.17	N
586	2	chr1	29389	29415	no-call	complex	=	?	?											-93						1.17	N
587	2	chr1	29415	29420	hom	ref	=	=	=											15						1.17	N
588	2	chr1	29420	29466	no-call	complex	=	?	?											-91						1.17	N
589	2	chr1	29466	29477	hom	ref	=	=	=											17						1.17	N
590	2	chr1	29477	29514	no-call	complex	=	?	?											-77						1.17	N
591	2	chr1	29514	29567	hom	ref	=	=	=											15						1.17	N
592	2	chr1	29567	29591	no-call	complex	=	?	?											-335						1.17	N
593	2	chr1	29591	29629	hom	ref	=	=	=											15						1.17	N
594	2	chr1	29629	29636	no-call	complex	=	?	?											-106	653635:NR_024540.1:WASH5P::::TSS-UPSTREAM:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
595	2	chr1	29636	29691	hom	ref	=	=	=											16						1.17	N
596	2	chr1	29691	29705	no-call	complex	=	?	?											-164						1.17	N
597	2	chr1	29705	29716	hom	ref	=	=	=											16						1.17	N
598	2	chr1	29716	29762	no-call	complex	=	?	?											-252						1.17	N
599	2	chr1	29762	29786	hom	ref	=	=	=											31						1.17	N
600	2	chr1	29786	29823	no-call	complex	=	?	?											-885						1.17	N
601	2	chr1	29823	29845	hom	ref	=	=	=											62						1.17	N
602	2	chr1	29845	29852	no-call	complex	=	?	?											-417	653635:NR_024540.1:WASH5P::::TSS-UPSTREAM:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
603	2	chr1	29852	29877	hom	ref	=	=	=											47						1.17	N
604	2	chr1	29877	29897	no-call	complex	=	?	?											-224						1.17	N
605	2	chr1	29897	29935	hom	ref	=	=	=											19						1.17	N
606	2	chr1	29935	29971	no-call	complex	=	?	?											-191						1.17	N
607	2	chr1	29971	30017	hom	ref	=	=	=											25						1.17	N
608	2	chr1	30017	30040	no-call	complex	=	?	?											-505						1.17	N
609	2	chr1	30040	30075	hom	ref	=	=	=											33						1.17	N
610	2	chr1	30075	30107	no-call	complex	=	?	?											-178						1.17	N
611	2	chr1	30107	30184	hom	ref	=	=	=											8						1.17	N
612	2	chr1	30184	30202	no-call	complex	=	?	?											-116						1.17	N
613	2	chr1	30202	30235	hom	ref	=	=	=											43						1.17	N
614	2	chr1	30235	30256	no-call	complex	=	?	?											-250						1.17	N
615	2	chr1	30256	30272	hom	ref	=	=	=											14						1.17	N
616	2	chr1	30272	30292	no-call	complex	=	?	?											-272						1.17	N
617	2	chr1	30292	30311	hom	ref	=	=	=											37						1.17	N
618	2	chr1	30311	30323	no-call	complex	=	?	?											-466						1.17	N
619	2	chr1	30323	30358	hom	ref	=	=	=											12						1.17	N
620	2	chr1	30358	30379	no-call	complex	=	?	?											-684			hsa-mir-1302-2:MI0006363			1.17	N
621	2	chr1	30379	30407	hom	ref	=	=	=											29						1.17	N
622	2	chr1	30407	30427	no-call	complex	=	?	?											-385			hsa-mir-1302-2:MI0006363			1.17	N
623	2	chr1	30427	30485	hom	ref	=	=	=											15						1.17	N
624	2	chr1	30485	30492	no-call	complex	=	?	?											-174	653635:NR_024540.1:WASH5P::::TSS-UPSTREAM:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::TSS-UPSTREAM:UNKNOWN-INC	hsa-mir-1302-2:MI0006363			1.17	N
625	2	chr1	30492	30524	hom	ref	=	=	=											32						1.17	N
626	2	chr1	30524	30548	no-call	complex	=	?	?											-197						1.17	N
627	2	chr1	30548	30566	hom	ref	=	=	=											26						1.17	N
628	2	chr1	30566	30589	no-call	complex	=	?	?											-226						1.17	N
629	2	chr1	30589	30632	hom	ref	=	=	=											47						1.17	N
630	2	chr1	30632	30652	no-call	complex	=	?	?											-157						1.17	N
631	2	chr1	30652	30659	hom	ref	=	=	=											20						1.17	N
632	2	chr1	30659	30675	no-call	complex	=	?	?											-195						1.17	N
633	2	chr1	30675	30727	hom	ref	=	=	=											6						1.17	N
634	2	chr1	30727	30728	half	ref	G	G	N	70	120									6	653635:NR_024540.1:WASH5P::::TSS-UPSTREAM:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::TSS-UPSTREAM:UNKNOWN-INC		MLT1A:ERVL-MaLR:23.2	5	1.17	N
635	2	chr1	30728	30775	hom	ref	=	=	=											6						1.17	N
636	2	chr1	30775	30797	no-call	complex	=	?	?											-240						1.17	N
637	2	chr1	30797	30803	hom	ref	=	=	=											52						1.17	N
638	2	chr1	30803	30822	no-call	complex	=	?	?											-141						1.17	N
639	2	chr1	30822	30851	hom	ref	=	=	=											15						1.17	N
640	2	chr1	30851	30899	no-call	complex	=	?	?											-117						1.17	N
641	2	chr1	30899	30906	hom	ref	=	=	=											10						1.17	N
642	2	chr1	30906	30974	no-call	complex	=	?	?											-323						1.17	N
643	2	chr1	30974	30981	hom	ref	=	=	=											38						1.17	N
644	2	chr1	30981	31000	no-call	complex	=	?	?											-286						1.17	N
645	2	chr1	31000	31025	hom	ref	=	=	=											41						1.17	N
646	2	chr1	31025	31040	no-call	complex	=	?	?											-144						1.17	N
647	2	chr1	31040	31162	hom	ref	=	=	=											27						1.17	N
648	2	chr1	31162	31169	no-call	complex	=	?	?											-199	653635:NR_024540.1:WASH5P::::TSS-UPSTREAM:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
649	2	chr1	31169	31281	hom	ref	=	=	=											26						1.17	N
650	2	chr1	31281	31298	no-call	complex	=	?	?											-365						1.17	N
651	2	chr1	31298	31391	hom	ref	=	=	=											21						1.17	N
652	2	chr1	31391	31399	no-call	complex	=	?	?											-104	653635:NR_024540.1:WASH5P::::TSS-UPSTREAM:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
653	2	chr1	31399	31440	hom	ref	=	=	=											39						1.17	N
654	2	chr1	31440	31470	no-call	complex	=	?	?											-224						1.17	N
655	2	chr1	31470	31483	hom	ref	=	=	=											18						1.17	N
656	2	chr1	31483	31530	no-call	complex	=	?	?											-323						1.17	N
657	2	chr1	31530	31546	hom	ref	=	=	=											44						1.17	N
658	2	chr1	31546	31575	no-call	complex	=	?	?											-1093						1.17	N
659	2	chr1	31575	31619	hom	ref	=	=	=											23						1.17	N
660	2	chr1	31619	31653	no-call	complex	=	?	?											-37						1.17	N
661	2	chr1	31653	31668	hom	ref	=	=	=											34						1.17	N
662	2	chr1	31668	31700	no-call	complex	=	?	?											-475						1.17	N
663	2	chr1	31700	31715	hom	ref	=	=	=											29						1.17	N
664	2	chr1	31715	31743	no-call	complex	=	?	?											-129						1.17	N
665	2	chr1	31743	31758	hom	ref	=	=	=											25						1.17	N
666	2	chr1	31758	31775	no-call	complex	=	?	?											-43						1.17	N
667	2	chr1	31775	31789	hom	ref	=	=	=											34						1.17	N
668	2	chr1	31789	31821	no-call	complex	=	?	?											-239						1.17	N
669	2	chr1	31821	31855	hom	ref	=	=	=											63						1.17	N
670	2	chr1	31855	31878	no-call	complex	=	?	?											-507						1.17	N
671	2	chr1	31878	31930	hom	ref	=	=	=											33						1.17	N
672	2	chr1	31930	31980	no-call	complex	=	?	?											-532						1.17	N
673	2	chr1	31980	32000	hom	ref	=	=	=											28						1.17	N
674	2	chr1	32000	32007	no-call	complex	=	?	?											-92	653635:NR_024540.1:WASH5P::::TSS-UPSTREAM:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
675	2	chr1	32007	32037	hom	ref	=	=	=											37						1.17	N
676	2	chr1	32037	32076	no-call	complex	=	?	?											-134						1.17	N
677	2	chr1	32076	32101	hom	ref	=	=	=											12						1.17	N
678	2	chr1	32101	32126	no-call	complex	=	?	?											-87						1.17	N
679	2	chr1	32126	32146	hom	ref	=	=	=											26						1.17	N
680	2	chr1	32146	32180	no-call	complex	=	?	?											-379						1.17	N
681	2	chr1	32180	32237	hom	ref	=	=	=											59						1.17	N
682	2	chr1	32237	32273	no-call	complex	=	?	?											-191						1.17	N
683	2	chr1	32273	32321	hom	ref	=	=	=											48						1.17	N
684	2	chr1	32321	32364	no-call	complex	=	?	?											-298						1.17	N
685	2	chr1	32364	32376	hom	ref	=	=	=											23						1.17	N
686	2	chr1	32376	32413	no-call	complex	=	?	?											-286						1.17	N
687	2	chr1	32413	32435	hom	ref	=	=	=											10						1.17	N
688	2	chr1	32435	32442	no-call	complex	=	?	?											-130	653635:NR_024540.1:WASH5P::::TSS-UPSTREAM:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
689	2	chr1	32442	32463	hom	ref	=	=	=											35						1.17	N
690	2	chr1	32463	32492	no-call	complex	=	?	?											-631						1.17	N
691	2	chr1	32492	32584	hom	ref	=	=	=											32						1.17	N
692	2	chr1	32584	32591	no-call	complex	=	?	?											-952	653635:NR_024540.1:WASH5P::::TSS-UPSTREAM:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
693	2	chr1	32591	32645	hom	ref	=	=	=											49						1.17	N
694	2	chr1	32645	32677	no-call	complex	=	?	?											-318						1.17	N
695	2	chr1	32677	32732	hom	ref	=	=	=											14						1.17	N
696	2	chr1	32732	32759	no-call	complex	=	?	?											-152						1.17	N
697	2	chr1	32759	32814	hom	ref	=	=	=											18						1.17	N
698	2	chr1	32814	32837	no-call	complex	=	?	?											-457						1.17	N
699	2	chr1	32837	32890	hom	ref	=	=	=											40						1.17	N
700	2	chr1	32890	32897	no-call	complex	=	?	?											-591	653635:NR_024540.1:WASH5P::::TSS-UPSTREAM:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
701	2	chr1	32897	32962	hom	ref	=	=	=											39						1.17	N
702	2	chr1	32962	32992	no-call	complex	=	?	?											-196						1.17	N
703	2	chr1	32992	33040	hom	ref	=	=	=											26						1.17	N
704	2	chr1	33040	33061	no-call	complex	=	?	?											-154						1.17	N
705	2	chr1	33061	33132	hom	ref	=	=	=											38						1.17	N
706	2	chr1	33132	33153	no-call	complex	=	?	?											-208						1.17	N
707	2	chr1	33153	33163	hom	ref	=	=	=											18						1.17	N
708	2	chr1	33163	33182	no-call	complex	=	?	?											-356						1.17	N
709	2	chr1	33182	33257	hom	ref	=	=	=											47						1.17	N
710	2	chr1	33257	33264	no-call	complex	=	?	?											-50	653635:NR_024540.1:WASH5P::::TSS-UPSTREAM:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
711	2	chr1	33264	33328	hom	ref	=	=	=											33						1.17	N
712	2	chr1	33328	33360	no-call	complex	=	?	?											-1120						1.17	N
713	2	chr1	33360	33376	hom	ref	=	=	=											41						1.17	N
714	2	chr1	33376	33383	no-call	complex	=	?	?											-163	653635:NR_024540.1:WASH5P::::TSS-UPSTREAM:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
715	2	chr1	33383	33397	hom	ref	=	=	=											23						1.17	N
716	2	chr1	33397	33476	no-call	complex	=	?	?											-230						1.17	N
717	2	chr1	33476	33491	hom	ref	=	=	=											39						1.17	N
718	2	chr1	33491	33498	no-call	complex	=	?	?											-168	653635:NR_024540.1:WASH5P::::TSS-UPSTREAM:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
719	2	chr1	33498	33503	hom	ref	=	=	=											85						1.17	N
720	2	chr1	33503	33545	no-call	complex	=	?	?											-335						1.17	N
721	2	chr1	33545	33551	hom	ref	=	=	=											38						1.17	N
722	2	chr1	33551	33558	no-call	complex	=	?	?											-47	653635:NR_024540.1:WASH5P::::TSS-UPSTREAM:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
723	2	chr1	33558	33627	hom	ref	=	=	=											40						1.17	N
724	2	chr1	33627	33634	no-call	complex	=	?	?											-193	653635:NR_024540.1:WASH5P::::TSS-UPSTREAM:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
725	2	chr1	33634	33652	hom	ref	=	=	=											35						1.17	N
726	2	chr1	33652	33689	no-call	complex	=	?	?											-429						1.17	N
727	2	chr1	33689	33702	hom	ref	=	=	=											20						1.17	N
728	2	chr1	33702	33750	no-call	complex	=	?	?											-259						1.17	N
729	2	chr1	33750	33877	hom	ref	=	=	=											-12						1.17	N
730	2	chr1	33877	33878	half	ref	A	A	N	64	120									-12	653635:NR_024540.1:WASH5P::::TSS-UPSTREAM:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::TSS-UPSTREAM:UNKNOWN-INC		L1PA6:L1:7.4	5	1.17	N
731	2	chr1	33878	33903	hom	ref	=	=	=											-14						1.17	N
732	2	chr1	33903	33937	no-call	complex	=	?	?											-156						1.17	N
733	2	chr1	33937	33967	hom	ref	=	=	=											18						1.17	N
734	2	chr1	33967	33974	no-call	complex	=	?	?											-179	653635:NR_024540.1:WASH5P::::TSS-UPSTREAM:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
735	2	chr1	33974	34025	hom	ref	=	=	=											22						1.17	N
736	2	chr1	34025	34052	no-call	complex	=	?	?											-251						1.17	N
737	2	chr1	34052	34076	hom	ref	=	=	=											48						1.17	N
738	2	chr1	34076	34084	no-call	complex	=	?	?											-93	653635:NR_024540.1:WASH5P::::TSS-UPSTREAM:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
739	2	chr1	34084	34120	hom	ref	=	=	=											46						1.17	N
740	2	chr1	34120	34127	no-call	complex	=	?	?											-149	653635:NR_024540.1:WASH5P::::TSS-UPSTREAM:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
741	2	chr1	34127	34241	hom	ref	=	=	=											24						1.17	N
742	2	chr1	34241	34248	no-call	complex	=	?	?											-13	653635:NR_024540.1:WASH5P::::TSS-UPSTREAM:UNKNOWN-INC	653635:NR_024540.1:WASH5P::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
743	2	chr1	34248	34290	hom	ref	=	=	=											35						1.17	N
744	2	chr1	34290	34331	no-call	complex	=	?	?											-209						1.17	N
745	2	chr1	34331	34370	hom	ref	=	=	=											11						1.17	N
746	2	chr1	34370	34388	no-call	complex	=	?	?											16						1.17	N
747	2	chr1	34388	34407	hom	ref	=	=	=											15						1.17	N
748	2	chr1	34407	34437	no-call	complex	=	?	?											-17						1.17	N
749	2	chr1	34437	34452	hom	ref	=	=	=											40						1.17	N
750	2	chr1	34452	34474	no-call	complex	=	?	?											-406						1.17	N
751	2	chr1	34474	34512	hom	ref	=	=	=											24						1.17	N
752	2	chr1	34512	34553	no-call	complex	=	?	?											-391						1.17	N
753	2	chr1	34553	34580	hom	ref	=	=	=											12						1.17	N
754	2	chr1	34580	34606	no-call	complex	=	?	?											-153						1.17	N
755	2	chr1	34606	34630	hom	ref	=	=	=											65						1.17	N
756	2	chr1	34630	34640	no-call	complex	=	?	?											-762						1.17	N
757	2	chr1	34640	34703	hom	ref	=	=	=											44						1.17	N
758	2	chr1	34703	34717	no-call	complex	=	?	?											-63						1.17	N
759	2	chr1	34717	34739	hom	ref	=	=	=											38						1.17	N
760	2	chr1	34739	34766	no-call	complex	=	?	?											-94						1.17	N
761	2	chr1	34766	34775	hom	ref	=	=	=											39						1.17	N
762	2	chr1	34775	34813	no-call	complex	=	?	?											-231						1.17	N
763	2	chr1	34813	34912	hom	ref	=	=	=											1						1.17	N
764	2	chr1	34912	34913	half	ref	G	G	N	49	120									1	645520:NR_026818.1:FAM138A::::UTR:UNKNOWN-INC	645520:NR_026818.1:FAM138A::::UTR:UNKNOWN-INC		MLT1J2:ERVL-MaLR:40.8	6	1.17	N
765	2	chr1	34913	34967	hom	ref	=	=	=											-20						1.17	N
766	2	chr1	34967	34990	no-call	complex	=	?	?											-230						1.17	N
767	2	chr1	34990	35006	hom	ref	=	=	=											49						1.17	N
768	2	chr1	35006	35038	no-call	complex	=	?	?											-217						1.17	N
769	2	chr1	35038	35075	hom	ref	=	=	=											36						1.17	N
770	2	chr1	35075	35098	no-call	complex	=	?	?											-239						1.17	N
771	2	chr1	35098	35118	hom	ref	=	=	=											-4						1.17	N
772	2	chr1	35118	35119	half	ref	G	G	?	149	0									-4	645520:NR_026818.1:FAM138A::::UTR:UNKNOWN-INC	645520:NR_026818.1:FAM138A::::UTR:UNKNOWN-INC			6	1.17	N
773	2	chr1	35119	35168	hom	ref	=	=	=											-4						1.17	N
774	2	chr1	35168	35189	no-call	complex	=	?	?											-171						1.17	N
775	2	chr1	35189	35202	hom	ref	=	=	=											54						1.17	N
776	2	chr1	35202	35211	no-call	complex	=	?	?											33	645520:NR_026818.1:FAM138A::::INTRON:UNKNOWN-INC	645520:NR_026818.1:FAM138A::::INTRON:UNKNOWN-INC				1.17	N
777	2	chr1	35211	35228	hom	ref	=	=	=											64						1.17	N
778	2	chr1	35228	35254	no-call	complex	=	?	?											-153						1.17	N
779	2	chr1	35254	35282	hom	ref	=	=	=											36						1.17	N
780	2	chr1	35282	35319	no-call	complex	=	?	?											-84						1.17	N
781	2	chr1	35319	35393	hom	ref	=	=	=											16						1.17	N
782	2	chr1	35393	35419	no-call	complex	=	?	?											-145						1.17	N
783	2	chr1	35419	35469	hom	ref	=	=	=											28						1.17	N
784	2	chr1	35469	35514	no-call	complex	=	?	?											-83						1.17	N
785	2	chr1	35514	35554	hom	ref	=	=	=											35						1.17	N
786	2	chr1	35554	35582	no-call	complex	=	?	?											-112						1.17	N
787	2	chr1	35582	35656	hom	ref	=	=	=											14						1.17	N
788	2	chr1	35656	35663	no-call	complex	=	?	?											-369	645520:NR_026818.1:FAM138A::::INTRON:UNKNOWN-INC	645520:NR_026818.1:FAM138A::::INTRON:UNKNOWN-INC				1.17	N
789	2	chr1	35663	35699	hom	ref	=	=	=											-22						1.17	N
790	2	chr1	35699	35700	half	ref	C	C	N	74	123									-22	645520:NR_026818.1:FAM138A::::INTRON:UNKNOWN-INC	645520:NR_026818.1:FAM138A::::INTRON:UNKNOWN-INC			6	1.17	N
791	2	chr1	35700	35754	hom	ref	=	=	=											-22						1.17	N
792	2	chr1	35754	35762	no-call	complex	=	?	?											-67	645520:NR_026818.1:FAM138A::::UTR:UNKNOWN-INC	645520:NR_026818.1:FAM138A::::UTR:UNKNOWN-INC				1.17	N
793	2	chr1	35762	35812	hom	ref	=	=	=											24						1.17	N
794	2	chr1	35812	35853	no-call	complex	=	?	?											-3						1.17	N
795	2	chr1	35853	35932	hom	ref	=	=	=											16						1.17	N
796	2	chr1	35932	35939	no-call	complex	=	?	?											-106	645520:NR_026818.1:FAM138A::::UTR:UNKNOWN-INC	645520:NR_026818.1:FAM138A::::UTR:UNKNOWN-INC				1.17	N
797	2	chr1	35939	35998	hom	ref	=	=	=											27						1.17	N
798	2	chr1	35998	36029	no-call	complex	=	?	?											-127						1.17	N
799	2	chr1	36029	36128	hom	ref	=	=	=											-8						1.17	N
800	2	chr1	36128	36128	half	ref			?	28	0	423	424							-8	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC			6	1.17	N
801	2	chr1	36128	36136	hom	ref	=	=	=											-8						1.17	N
802	2	chr1	36136	36136	half	ref			?	22	0	423	424							53	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC			6	1.17	N
803	2	chr1	36136	36149	hom	ref	=	=	=											-8						1.17	N
804	2	chr1	36149	36150	half	ref	A	A	N	120	120	423	424							-8	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC			6	1.17	N
805	2	chr1	36150	36178	hom	ref	=	=	=											-8						1.17	N
806	2	chr1	36178	36200	no-call	complex	=	?	?											-13						1.17	N
807	2	chr1	36200	36213	hom	ref	=	=	=											20						1.17	N
808	2	chr1	36213	36242	no-call	complex	=	?	?											-13						1.17	N
809	2	chr1	36242	36283	hom	ref	=	=	=											4						1.17	N
810	2	chr1	36283	36284	half	ref	G	G	N	121	121									4	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC			6	1.17	N
811	2	chr1	36284	36337	hom	ref	=	=	=											4						1.17	N
812	2	chr1	36337	36368	no-call	complex	=	?	?											-116						1.17	N
813	2	chr1	36368	36385	hom	ref	=	=	=											16						1.17	N
814	2	chr1	36385	36435	no-call	complex	=	?	?											-179						1.17	N
815	2	chr1	36435	36482	hom	ref	=	=	=											25						1.17	N
816	2	chr1	36482	36511	no-call	complex	=	?	?											-425						1.17	N
817	2	chr1	36511	36524	hom	ref	=	=	=											13						1.17	N
818	2	chr1	36524	36531	no-call	complex	=	?	?											-296	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
819	2	chr1	36531	36714	hom	ref	=	=	=											17						1.17	N
820	2	chr1	36714	36753	no-call	complex	=	?	?											-240						1.17	N
821	2	chr1	36753	36788	hom	ref	=	=	=											-16						1.17	N
822	2	chr1	36788	36789	half	ref	C	C	N	62	120									-16	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC			6	1.17	N
823	2	chr1	36789	36847	hom	ref	=	=	=											-16						1.17	N
824	2	chr1	36847	36855	no-call	complex	=	?	?											-49	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
825	2	chr1	36855	36887	hom	ref	=	=	=											25						1.17	N
826	2	chr1	36887	36926	no-call	complex	=	?	?											-85						1.17	N
827	2	chr1	36926	37050	hom	ref	=	=	=											-2						1.17	N
828	2	chr1	37050	37058	no-call	complex	=	?	?											-74	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
829	2	chr1	37058	37142	hom	ref	=	=	=											-23						1.17	N
830	2	chr1	37142	37143	half	ref	G	G	N	94	130									-23	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC		Charlie5:hAT-Charlie:25.8	6	1.17	N
831	2	chr1	37143	37235	hom	ref	=	=	=											-23						1.17	N
832	2	chr1	37235	37254	no-call	complex	=	?	?											-240						1.17	N
833	2	chr1	37254	37317	hom	ref	=	=	=											11						1.17	N
834	2	chr1	37317	37340	no-call	complex	=	?	?											-50						1.17	N
835	2	chr1	37340	37361	hom	ref	=	=	=											15						1.17	N
836	2	chr1	37361	37387	no-call	complex	=	?	?											-278						1.17	N
837	2	chr1	37387	37505	hom	ref	=	=	=											7						1.17	N
838	2	chr1	37505	37536	no-call	complex	=	?	?											-65						1.17	N
839	2	chr1	37536	37578	hom	ref	=	=	=											20						1.17	N
840	2	chr1	37578	37592	no-call	complex	=	?	?											-172						1.17	N
841	2	chr1	37592	37649	hom	ref	=	=	=											14						1.17	N
842	2	chr1	37649	37679	no-call	complex	=	?	?											-103						1.17	N
843	2	chr1	37679	37723	hom	ref	=	=	=											26						1.17	N
844	2	chr1	37723	37730	no-call	complex	=	?	?											-42	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
845	2	chr1	37730	37768	hom	ref	=	=	=											56						1.17	N
846	2	chr1	37768	37775	no-call	complex	=	?	?											-501	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
847	2	chr1	37775	37810	hom	ref	=	=	=											42						1.17	N
848	2	chr1	37810	37840	no-call	complex	=	?	?											-38						1.17	N
849	2	chr1	37840	38005	hom	ref	=	=	=											-45						1.17	N
850	2	chr1	38005	38031	no-call	complex	=	?	?											-529						1.17	N
851	2	chr1	38031	38049	hom	ref	=	=	=											29						1.17	N
852	2	chr1	38049	38056	no-call	complex	=	?	?											-60	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
853	2	chr1	38056	38139	hom	ref	=	=	=											14						1.17	N
854	2	chr1	38139	38187	no-call	complex	=	?	?											-64						1.17	N
855	2	chr1	38187	38216	hom	ref	=	=	=											24						1.17	N
856	2	chr1	38216	38237	no-call	complex	=	?	?											-92						1.17	N
857	2	chr1	38237	38281	hom	ref	=	=	=											22						1.17	N
858	2	chr1	38281	38301	no-call	complex	=	?	?											-78						1.17	N
859	2	chr1	38301	38394	hom	ref	=	=	=											22						1.17	N
860	2	chr1	38394	38406	no-call	complex	=	?	?											29						1.17	N
861	2	chr1	38406	38448	hom	ref	=	=	=											36						1.17	N
862	2	chr1	38448	38455	no-call	complex	=	?	?											-215	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
863	2	chr1	38455	38498	hom	ref	=	=	=											29						1.17	N
864	2	chr1	38498	38536	no-call	complex	=	?	?											-43						1.17	N
865	2	chr1	38536	38599	hom	ref	=	=	=											20						1.17	N
866	2	chr1	38599	38609	no-call	complex	=	?	?											-212						1.17	N
867	2	chr1	38609	38738	hom	ref	=	=	=											31						1.17	N
868	2	chr1	38738	38745	no-call	complex	=	?	?											-192	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
869	2	chr1	38745	38771	hom	ref	=	=	=											29						1.17	N
870	2	chr1	38771	38789	no-call	complex	=	?	?											-121						1.17	N
871	2	chr1	38789	38807	hom	ref	=	=	=											44						1.17	N
872	2	chr1	38807	38828	no-call	complex	=	?	?											-179						1.17	N
873	2	chr1	38828	38869	hom	ref	=	=	=											20						1.17	N
874	2	chr1	38869	38911	no-call	complex	=	?	?											-86						1.17	N
875	2	chr1	38911	39011	hom	ref	=	=	=											30						1.17	N
876	2	chr1	39011	39018	no-call	complex	=	?	?											3	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
877	2	chr1	39018	39176	hom	ref	=	=	=											35						1.17	N
878	2	chr1	39176	39191	no-call	complex	=	?	?											-166						1.17	N
879	2	chr1	39191	39216	hom	ref	=	=	=											35						1.17	N
880	2	chr1	39216	39265	no-call	complex	=	?	?											-664						1.17	N
881	2	chr1	39265	39402	hom	ref	=	=	=											-2						1.17	N
882	2	chr1	39402	39426	no-call	complex	=	?	?											-329						1.17	N
883	2	chr1	39426	39436	hom	ref	=	=	=											57						1.17	N
884	2	chr1	39436	39443	no-call	complex	=	?	?											-20	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
885	2	chr1	39443	39483	hom	ref	=	=	=											37						1.17	N
886	2	chr1	39483	39500	no-call	complex	=	?	?											-585						1.17	N
887	2	chr1	39500	39574	hom	ref	=	=	=											15						1.17	N
888	2	chr1	39574	39607	no-call	complex	=	?	?											-258						1.17	N
889	2	chr1	39607	39627	hom	ref	=	=	=											55						1.17	N
890	2	chr1	39627	39645	no-call	complex	=	?	?											-69						1.17	N
891	2	chr1	39645	39656	hom	ref	=	=	=											15						1.17	N
892	2	chr1	39656	39681	no-call	complex	=	?	?											-88						1.17	N
893	2	chr1	39681	39718	hom	ref	=	=	=											31						1.17	N
894	2	chr1	39718	39752	no-call	complex	=	?	?											-61						1.17	N
895	2	chr1	39752	39775	hom	ref	=	=	=											35						1.17	N
896	2	chr1	39775	39782	no-call	complex	=	?	?											-104	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
897	2	chr1	39782	39870	hom	ref	=	=	=											34						1.17	N
898	2	chr1	39870	39882	no-call	complex	=	?	?											-126						1.17	N
899	2	chr1	39882	39951	hom	ref	=	=	=											-31						1.17	N
900	2	chr1	39951	39958	no-call	complex	=	?	?											-57	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
901	2	chr1	39958	40028	hom	ref	=	=	=											-7						1.17	N
902	2	chr1	40028	40032	half	ref	GCTA	GCTA	NCNN	37	93									3	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC		MLT1E1A:ERVL-MaLR:44.5	6	1.17	N
903	2	chr1	40032	40156	hom	ref	=	=	=											21						1.17	N
904	2	chr1	40156	40163	no-call	complex	=	?	?											-550	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
905	2	chr1	40163	40238	hom	ref	=	=	=											13						1.17	N
906	2	chr1	40238	40264	no-call	complex	=	?	?											-311						1.17	N
907	2	chr1	40264	40294	hom	ref	=	=	=											39						1.17	N
908	2	chr1	40294	40301	no-call	complex	=	?	?											-369	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
909	2	chr1	40301	40341	hom	ref	=	=	=											30						1.17	N
910	2	chr1	40341	40348	no-call	complex	=	?	?											-100	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
911	2	chr1	40348	40383	hom	ref	=	=	=											38						1.17	N
912	2	chr1	40383	40412	no-call	complex	=	?	?											-58						1.17	N
913	2	chr1	40412	40623	hom	ref	=	=	=											0						1.17	N
914	2	chr1	40623	40662	no-call	complex	=	?	?											-142						1.17	N
915	2	chr1	40662	40889	hom	ref	=	=	=											51						1.17	N
916	2	chr1	40889	40912	no-call	complex	=	?	?											-1389						1.17	N
917	2	chr1	40912	41049	hom	ref	=	=	=											59						1.17	N
918	2	chr1	41049	41056	no-call	complex	=	?	?											-222	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC	645520:NR_026818.1:FAM138A::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
919	2	chr1	41056	41214	hom	ref	=	=	=											52						1.17	N
920	2	chr1	41214	41259	no-call	complex	=	?	?											-264						1.17	N
921	2	chr1	41259	41384	hom	ref	=	=	=											17						1.17	N
922	2	chr1	41384	41414	no-call	complex	=	?	?											-124						1.17	N
923	2	chr1	41414	41506	hom	ref	=	=	=											60						1.17	N
924	2	chr1	41506	41514	no-call	complex	=	?	?											-408						1.17	N
925	2	chr1	41514	41590	hom	ref	=	=	=											38						1.17	N
926	2	chr1	41590	41591	half	ref	C	C	?	121	0	481	482							63				ERVL-E-int:ERVL:47.4	2	1.17	N
927	2	chr1	41591	41615	hom	ref	=	=	=											-34						1.17	N
928	2	chr1	41615	41616	half	ref	T	T	N	38	121	481	482							7				ERVL-E-int:ERVL:47.4	2	1.17	N
929	2	chr1	41616	41757	hom	ref	=	=	=											7						1.17	N
930	2	chr1	41757	41764	no-call	complex	=	?	?											-157						1.17	N
931	2	chr1	41764	41838	hom	ref	=	=	=											22						1.17	N
932	2	chr1	41838	41845	no-call	complex	=	?	?											-187						1.17	N
933	2	chr1	41845	41980	hom	ref	=	=	=											-170						1.17	N
934	2	chr1	41980	41981	hom	snp	A	G	G	76	97			dbsnp.86:rs806721	425	1	1	1	2	-170				ERVL-E-int:ERVL:47.4	2	1.17	N
935	2	chr1	41981	42198	hom	ref	=	=	=											-170						1.17	N
936	2	chr1	42198	42205	no-call	complex	=	?	?											-516						1.17	N
937	2	chr1	42205	42389	hom	ref	=	=	=											68						1.17	N
938	2	chr1	42389	42396	no-call	complex	=	?	?											-307						1.17	N
939	2	chr1	42396	42499	hom	ref	=	=	=											65						1.17	N
940	2	chr1	42499	42528	no-call	complex	=	?	?											-123						1.17	N
941	2	chr1	42528	42573	hom	ref	=	=	=											30						1.17	N
942	2	chr1	42573	42582	no-call	complex	=	?	?											-119						1.17	N
943	2	chr1	42582	42684	hom	ref	=	=	=											45						1.17	N
944	2	chr1	42684	42692	no-call	complex	=	?	?											-700						1.17	N
945	2	chr1	42692	42745	hom	ref	=	=	=											65						1.17	N
946	2	chr1	42745	42789	no-call	complex	=	?	?											-179						1.17	N
947	2	chr1	42789	42800	hom	ref	=	=	=											28						1.17	N
948	2	chr1	42800	42827	no-call	complex	=	?	?											-312						1.17	N
949	2	chr1	42827	42871	hom	ref	=	=	=											15						1.17	N
950	2	chr1	42871	42888	no-call	complex	=	?	?											-1						1.17	N
951	2	chr1	42888	43038	hom	ref	=	=	=											12						1.17	N
952	2	chr1	43038	43045	no-call	complex	=	?	?											-248						1.17	N
953	2	chr1	43045	43091	hom	ref	=	=	=											8						1.17	N
954	2	chr1	43091	43092	half	ref	T	T	N	71	71	487	488							8					2	1.17	N
955	2	chr1	43092	43101	hom	ref	=	=	=											8						1.17	N
956	2	chr1	43101	43105	half	ref	ATTT	ATTT	?	20	0	487	488							6					2	1.17	N
957	2	chr1	43105	43175	hom	ref	=	=	=											6						1.17	N
958	2	chr1	43175	43222	no-call	complex	=	?	?											-77						1.17	N
959	2	chr1	43222	43370	hom	ref	=	=	=											11						1.17	N
960	2	chr1	43370	43402	no-call	complex	=	?	?											-223						1.17	N
961	2	chr1	43402	43582	hom	ref	=	=	=											13						1.17	N
962	2	chr1	43582	43608	no-call	complex	=	?	?											-148						1.17	N
963	2	chr1	43608	43647	hom	ref	=	=	=											45						1.17	N
964	2	chr1	43647	43686	no-call	complex	=	?	?											-102						1.17	N
965	2	chr1	43686	43792	hom	ref	=	=	=											13						1.17	N
966	2	chr1	43792	43816	no-call	complex	=	?	?											-23						1.17	N
967	2	chr1	43816	44073	hom	ref	=	=	=											16						1.17	N
968	2	chr1	44073	44081	no-call	complex	=	?	?											-297						1.17	N
969	2	chr1	44081	44161	hom	ref	=	=	=											22						1.17	N
970	2	chr1	44161	44187	no-call	complex	=	?	?											-481						1.17	N
971	2	chr1	44187	44328	hom	ref	=	=	=											18						1.17	N
972	2	chr1	44328	44339	no-call	complex	=	?	?											-162						1.17	N
973	2	chr1	44339	44458	hom	ref	=	=	=											30						1.17	N
974	2	chr1	44458	44479	no-call	complex	=	?	?											-10						1.17	N
975	2	chr1	44479	44657	hom	ref	=	=	=											10						1.17	N
976	2	chr1	44657	44719	no-call	complex	=	?	?											-400						1.17	N
977	2	chr1	44719	44783	hom	ref	=	=	=											10						1.17	N
978	2	chr1	44783	44790	no-call	complex	=	?	?											-180						1.17	N
979	2	chr1	44790	44831	hom	ref	=	=	=											30						1.17	N
980	2	chr1	44831	44882	no-call	complex	=	?	?											-46						1.17	N
981	2	chr1	44882	45022	hom	ref	=	=	=											11						1.17	N
982	2	chr1	45022	45043	no-call	complex	=	?	?											-124						1.17	N
983	2	chr1	45043	45087	hom	ref	=	=	=											13						1.17	N
984	2	chr1	45087	45116	no-call	complex	=	?	?											-78						1.17	N
985	2	chr1	45116	45312	hom	ref	=	=	=											0						1.17	N
986	2	chr1	45312	45312	half	ref			?	27	0									1				L1MA8:L1:28.0	2	1.17	N
987	2	chr1	45312	45517	hom	ref	=	=	=											1						1.17	N
988	2	chr1	45517	45533	no-call	complex	=	?	?											-108						1.17	N
989	2	chr1	45533	45622	hom	ref	=	=	=											2						1.17	N
990	2	chr1	45622	45630	no-call	complex	=	?	?											-28						1.17	N
991	2	chr1	45630	45725	hom	ref	=	=	=											-21						1.17	N
992	2	chr1	45725	45744	no-call	complex	TATATAATTTTTGTCAATT	TATATANTTTTTGTCAATT	?	32	0	499	500							4				L1MA8:L1:28.0	2	1.17	N
993	2	chr1	45744	45749	hom	ref	=	=	=											16						1.17	N
994	2	chr1	45749	45760	no-call	complex	ATAATTTTTAA	ATAATT?TTAA	?	0	0	499	500							4				L1MA8:L1:28.0	2	1.17	N
995	2	chr1	45760	45783	hom	ref	=	=	=											-3						1.17	N
996	2	chr1	45783	45783	half	ref			?	22	0	501	502							-3					2	1.17	N
997	2	chr1	45783	45794	hom	ref	=	=	=											-8						1.17	N
998	2	chr1	45794	45794	half	ref			?	21	0	501	502							-8					2	1.17	N
999	2	chr1	45794	45856	hom	ref	=	=	=											-12						1.17	N
1000	2	chr1	45856	45894	no-call	complex	=	?	?											-55						1.17	N
1001	2	chr1	45894	45973	hom	ref	=	=	=											10						1.17	N
1002	2	chr1	45973	46017	no-call	complex	=	?	?											-18						1.17	N
1003	2	chr1	46017	46091	hom	ref	=	=	=											19						1.17	N
1004	2	chr1	46091	46098	no-call	complex	=	?	?											-24						1.17	N
1005	2	chr1	46098	46147	hom	ref	=	=	=											10						1.17	N
1006	2	chr1	46147	46148	half	ref	A	A	N	25	70	507	508							12				L1MA9:L1:24.3	2	1.17	N
1007	2	chr1	46148	46150	hom	ref	=	=	=											6						1.17	N
1008	2	chr1	46150	46151	half	ref	T	T	N	70	70	507	508							6				L1MA9:L1:24.3	2	1.17	N
1009	2	chr1	46151	46212	hom	ref	=	=	=											6						1.17	N
1010	2	chr1	46212	46245	no-call	complex	=	?	?											-53						1.17	N
1011	2	chr1	46245	46263	hom	ref	=	=	=											8						1.17	N
1012	2	chr1	46263	46264	half	ref	A	A	N	32	121									8					2	1.17	N
1013	2	chr1	46264	46398	hom	ref	=	=	=											8						1.17	N
1014	2	chr1	46398	46420	no-call	complex	=	?	?											-509						1.17	N
1015	2	chr1	46420	46488	hom	ref	=	=	=											17						1.17	N
1016	2	chr1	46488	46496	no-call	complex	=	?	?											-320						1.17	N
1017	2	chr1	46496	46666	hom	ref	=	=	=											22						1.17	N
1018	2	chr1	46666	46673	no-call	complex	=	?	?											-11						1.17	N
1019	2	chr1	46673	47104	hom	ref	=	=	=											15						1.17	N
1020	2	chr1	47104	47111	no-call	complex	=	?	?											-46						1.17	N
1021	2	chr1	47111	47286	hom	ref	=	=	=											29						1.17	N
1022	2	chr1	47286	47332	no-call	complex	=	?	?											-142						1.17	N
1023	2	chr1	47332	47657	hom	ref	=	=	=											30						1.17	N
1024	2	chr1	47657	47664	no-call	complex	=	?	?											-44						1.17	N
1025	2	chr1	47664	47757	hom	ref	=	=	=											15						1.17	N
1026	2	chr1	47757	47764	no-call	complex	=	?	?											-23						1.17	N
1027	2	chr1	47764	47929	hom	ref	=	=	=											8						1.17	N
1028	2	chr1	47929	47930	half	ref	T	T	N	84	120									8					2	1.17	N
1029	2	chr1	47930	48142	hom	ref	=	=	=											5						1.17	N
1030	2	chr1	48142	48186	no-call	complex	=	?	?											-47						1.17	N
1031	2	chr1	48186	48933	hom	ref	=	=	=											-14						1.17	N
1032	2	chr1	48933	48940	no-call	complex	=	?	?											-91						1.17	N
1033	2	chr1	48940	48972	hom	ref	=	=	=											63						1.17	N
1034	2	chr1	48972	49007	no-call	complex	=	?	?											-29						1.17	N
1035	2	chr1	49007	49084	hom	ref	=	=	=											12						1.17	N
1036	2	chr1	49084	49091	no-call	complex	=	?	?											-496						1.17	N
1037	2	chr1	49091	49182	hom	ref	=	=	=											-45						1.17	N
1038	2	chr1	49182	49182	half	ref			?	36	0									-45				L1PA14:L1:12.3	2	1.17	N
1039	2	chr1	49182	49239	hom	ref	=	=	=											-45						1.17	N
1040	2	chr1	49239	49246	no-call	complex	=	?	?											-63						1.17	N
1041	2	chr1	49246	49268	hom	ref	=	=	=											43						1.17	N
1042	2	chr1	49268	49294	no-call	complex	=	?	?											-59						1.17	N
1043	2	chr1	49294	49423	hom	ref	=	=	=											33						1.17	N
1044	2	chr1	49423	49430	no-call	complex	=	?	?											-26						1.17	N
1045	2	chr1	49430	49478	hom	ref	=	=	=											91						1.17	N
1046	2	chr1	49478	49518	no-call	complex	=	?	?											-175						1.17	N
1047	2	chr1	49518	49849	hom	ref	=	=	=											-36						1.17	N
1048	2	chr1	49849	49853	half	ref	CAAA	CAAA	?	115	0									-36					2	1.17	N
1049	2	chr1	49853	50136	hom	ref	=	=	=											-36						1.17	N
1050	2	chr1	50136	50144	half	ref	ATTTAATA	ATTTAATA	?	36	0	517	518							-3				AT_rich:Low_complexity:0.0	2	1.17	N
1051	2	chr1	50144	50149	hom	ref	=	=	=											-3						1.17	N
1052	2	chr1	50149	50151	half	ref	AT	AT	?	26	0	517	518							4				AT_rich:Low_complexity:0.0	2	1.17	N
1053	2	chr1	50151	50477	hom	ref	=	=	=											9						1.17	N
1054	2	chr1	50477	50517	no-call	complex	=	?	?											-21						1.17	N
1055	2	chr1	50517	51354	hom	ref	=	=	=											-21						1.17	N
1056	2	chr1	51354	51389	no-call	complex	=	?	?											-72						1.17	N
1057	2	chr1	51389	51399	hom	ref	=	=	=											30						1.17	N
1058	2	chr1	51399	51406	no-call	complex	=	?	?											-12						1.17	N
1059	2	chr1	51406	51455	hom	ref	=	=	=											34						1.17	N
1060	2	chr1	51455	51502	no-call	complex	=	?	?											-54						1.17	N
1061	2	chr1	51502	51600	hom	ref	=	=	=											16						1.17	N
1062	2	chr1	51600	51643	no-call	complex	=	?	?											-510						1.17	N
1063	2	chr1	51643	51672	hom	ref	=	=	=											-74						1.17	N
1064	2	chr1	51672	51673	hom	snp	T	C	C	53	53			dbsnp.100:rs2531251	469	1	1	0	1	-74				AluY:Alu:7.7	2	1.17	N
1065	2	chr1	51673	51679	hom	ref	=	=	=											-74						1.17	N
1066	2	chr1	51679	51679	no-call	complex		?	?	0	0	525	526		469					17				AluY:Alu:7.7	2	1.17	N
1067	2	chr1	51679	51682	hom	ref	=	=	=											-13						1.17	N
1068	2	chr1	51682	51682	no-call	complex		?	?	0	0	525	526		469					-13				AluY:Alu:7.7	2	1.17	N
1069	2	chr1	51682	51689	hom	ref	=	=	=											-13						1.17	N
1070	2	chr1	51689	51692	half	ref	CCC	CCC	NNN	53	36	525	526		469					-2				AluY:Alu:7.7	2	1.17	N
1071	2	chr1	51692	51712	hom	ref	=	=	=											-2						1.17	N
1072	2	chr1	51712	51750	no-call	complex	=	?	?											-1						1.17	N
1073	2	chr1	51750	51867	hom	ref	=	=	=											7						1.17	N
1074	2	chr1	51867	51867	half	ref			?	22	0	529	530							7				AluY:Alu:7.7	2	1.17	N
1075	2	chr1	51867	51874	hom	ref	=	=	=											7						1.17	N
1076	2	chr1	51874	51876	half	ref	AA	AA	?	81	0	529	530							7				AluY:Alu:7.7	2	1.17	N
1077	2	chr1	51876	51894	hom	ref	=	=	=											7						1.17	N
1078	2	chr1	51894	51912	no-call	complex	=	?	?											-16						1.17	N
1079	2	chr1	51912	51924	hom	ref	=	=	=											33						1.17	N
1080	2	chr1	51924	51954	no-call	complex	=	?	?											-19						1.17	N
1081	2	chr1	51954	52021	hom	ref	=	=	=											12						1.17	N
1082	2	chr1	52021	52045	no-call	complex	ACTGCACGATGCGCATGGTAAAGA	ACTGC?ACGATGCGCATGGTAAAGA	?	0	0									-1					2	1.17	N
1083	2	chr1	52045	52054	hom	ref	=	=	=											22						1.17	N
1084	2	chr1	52054	52066	no-call	complex	=	?	?											-8						1.17	N
1085	2	chr1	52066	52101	hom	ref	=	=	=											26						1.17	N
1086	2	chr1	52101	52108	no-call	complex	=	?	?											-21						1.17	N
1087	2	chr1	52108	52147	hom	ref	=	=	=											10						1.17	N
1088	2	chr1	52147	52177	no-call	complex	=	?	?											-7						1.17	N
1089	2	chr1	52177	52183	hom	ref	=	=	=											12						1.17	N
1090	2	chr1	52183	52220	half	ref	ATTAATAATAACTTATCATCACATGATTTATTAATAA	ATTAATAATAACTTATCATCACATGATTTATTAATAA	?	39	0				473					-30				AT_rich:Low_complexity:3.1	2	1.17	N
1091	2	chr1	52220	52237	hom	ref	=	=	=											-92						1.17	N
1092	2	chr1	52237	52238	hom	snp	T	G	G	63	115			dbsnp.100:rs2691277	473	7	7	0	7	-92				AT_rich:Low_complexity:3.1	2	1.17	N
1093	2	chr1	52238	52373	hom	ref	=	=	=											-92						1.17	N
1094	2	chr1	52373	52380	no-call	complex	=	?	?											-411						1.17	N
1095	2	chr1	52380	52723	hom	ref	=	=	=											20						1.17	N
1096	2	chr1	52723	52730	no-call	complex	=	?	?											-8						1.17	N
1097	2	chr1	52730	52859	hom	ref	=	=	=											74						1.17	N
1098	2	chr1	52859	52866	no-call	complex	=	?	?											-22						1.17	N
1099	2	chr1	52866	53005	hom	ref	=	=	=											-26						1.17	N
1100	2	chr1	53005	53012	no-call	complex	=	?	?											-81						1.17	N
1101	2	chr1	53012	53205	hom	ref	=	=	=											-127						1.17	N
1102	2	chr1	53205	53206	het-ref	snp	G	C	G	93	127			dbsnp.100:rs2854676	477	7	30	0	37	-127					2	1.17	N
1103	2	chr1	53206	53413	hom	ref	=	=	=											-127						1.17	N
1104	2	chr1	53413	53431	no-call	complex	=	?	?											-498						1.17	N
1105	2	chr1	53431	53687	hom	ref	=	=	=											19						1.17	N
1106	2	chr1	53687	53694	no-call	complex	=	?	?											-5						1.17	N
1107	2	chr1	53694	53755	hom	ref	=	=	=											15						1.17	N
1108	2	chr1	53755	53792	no-call	complex	=	?	?											-26						1.17	N
1109	2	chr1	53792	53811	hom	ref	=	=	=											34						1.17	N
1110	2	chr1	53811	53824	no-call	complex	=	?	?											-27						1.17	N
1111	2	chr1	53824	54042	hom	ref	=	=	=											-80						1.17	N
1112	2	chr1	54042	54043	het-ref	snp	C	T	C	66	84			dbsnp.100:rs2531228	481	3	10	0	13	-80					2	1.17	N
1113	2	chr1	54043	54174	hom	ref	=	=	=											-80						1.17	N
1114	2	chr1	54174	54181	no-call	complex	=	?	?											-27						1.17	N
1115	2	chr1	54181	54218	hom	ref	=	=	=											54						1.17	N
1116	2	chr1	54218	54225	no-call	complex	=	?	?											-35						1.17	N
1117	2	chr1	54225	54285	hom	ref	=	=	=											36						1.17	N
1118	2	chr1	54285	54293	no-call	complex	=	?	?											-704						1.17	N
1119	2	chr1	54293	54376	hom	ref	=	=	=											61						1.17	N
1120	2	chr1	54376	54398	no-call	complex	=	?	?											-59						1.17	N
1121	2	chr1	54398	54475	hom	ref	=	=	=											19						1.17	N
1122	2	chr1	54475	54482	no-call	complex	=	?	?											-50						1.17	N
1123	2	chr1	54482	54585	hom	ref	=	=	=											-161						1.17	N
1124	2	chr1	54585	54586	het-ref	snp	T	C	T	94	94			dbsnp.131:rs79600414	486	9	19	0	28	-161				L2:L2:49.7	2	1.17	N
1125	2	chr1	54586	54708	hom	ref	=	=	=											-161						1.17	N
1126	2	chr1	54708	54778	no-call	complex	=	?	?											-154						1.17	N
1127	2	chr1	54778	55034	hom	ref	=	=	=											40						1.17	N
1128	2	chr1	55034	55041	no-call	complex	=	?	?											-121						1.17	N
1129	2	chr1	55041	55125	hom	ref	=	=	=											17						1.17	N
1130	2	chr1	55125	55126	half	ref	C	C	N	92	92	543	544		488					0				L2:L2:49.7	2	1.17	N
1131	2	chr1	55126	55130	hom	ref	=	=	=											-20						1.17	N
1132	2	chr1	55130	55131	half	ref	A	A	?	46	0	543	544		488					-20				L2:L2:49.7	2	1.17	N
1133	2	chr1	55131	55163	hom	ref	=	=	=											-239						1.17	N
1134	2	chr1	55163	55164	hom	snp	C	A	A	76	92			dbsnp.103:rs3091274	488	9	9	1	10	-239				L2:L2:49.7	2	1.17	N
1135	2	chr1	55164	55301	hom	ref	=	=	=											-239						1.17	N
1136	2	chr1	55301	55302	het-ref	snp	C	T	C	87	95	546	545	dbsnp.103:rs3091273	489	15	19	0	34	-13				L2:L2:49.7	2	1.17	N
1137	2	chr1	55302	55321	hom	ref	=	=	=											-13						1.17	N
1138	2	chr1	55321	55322	het-ref	snp	C	T	C	95	95	546	545	dbsnp.103:rs3107974	489	12	12	0	24	30				L2:L2:49.7	2	1.17	N
1139	2	chr1	55322	55325	hom	ref	=	=	=											-9						1.17	N
1140	2	chr1	55325	55326	het-ref	snp	T	C	T	95	95	546	545	dbsnp.103:rs3107975	489	12	11	0	23	-9				L2:L2:49.7	2	1.17	N
1141	2	chr1	55326	55377	hom	ref	=	=	=											-9						1.17	N
1142	2	chr1	55377	55397	no-call	complex	=	?	?											-32						1.17	N
1143	2	chr1	55397	55424	hom	ref	=	=	=											59						1.17	N
1144	2	chr1	55424	55468	no-call	complex	=	?	?											-340						1.17	N
1145	2	chr1	55468	55541	hom	ref	=	=	=											46						1.17	N
1146	2	chr1	55541	55553	no-call	complex	=	?	?											20						1.17	N
1147	2	chr1	55553	55597	hom	ref	=	=	=											60						1.17	N
1148	2	chr1	55597	55605	no-call	complex	=	?	?											54						1.17	N
1149	2	chr1	55605	55812	hom	ref	=	=	=											43						1.17	N
1150	2	chr1	55812	55853	no-call	complex	=	?	?											-59						1.17	N
1151	2	chr1	55853	55925	hom	ref	=	=	=											-300						1.17	N
1152	2	chr1	55925	55926	hom	snp	T	C	C	66	97			dbsnp.101:rs3020698;dbsnp.121:rs13343114	495	12	12	0	12	-300					2	1.17	N
1153	2	chr1	55926	55972	hom	ref	=	=	=											-300						1.17	N
1154	2	chr1	55972	55979	no-call	complex	=	?	?											-92						1.17	N
1155	2	chr1	55979	56273	hom	ref	=	=	=											41						1.17	N
1156	2	chr1	56273	56301	no-call	complex	=	?	?											-76						1.17	N
1157	2	chr1	56301	56377	hom	ref	=	=	=											72						1.17	N
1158	2	chr1	56377	56384	no-call	complex	=	?	?											-492						1.17	N
1159	2	chr1	56384	56481	hom	ref	=	=	=											36						1.17	N
1160	2	chr1	56481	56501	no-call	complex	=	?	?											-93						1.17	N
1161	2	chr1	56501	56616	hom	ref	=	=	=											1						1.17	N
1162	2	chr1	56616	56618	half	ref	TT	TT	?	109	0	557	558							-6					2	1.17	N
1163	2	chr1	56618	56637	hom	ref	=	=	=											-6						1.17	N
1164	2	chr1	56637	56638	half	ref	C	C	N	41	120	557	558							-1					2	1.17	N
1165	2	chr1	56638	56793	hom	ref	=	=	=											-1						1.17	N
1166	2	chr1	56793	56814	no-call	complex	=	?	?											-67						1.17	N
1167	2	chr1	56814	56943	hom	ref	=	=	=											29						1.17	N
1168	2	chr1	56943	56950	no-call	complex	=	?	?											-303						1.17	N
1169	2	chr1	56950	56995	hom	ref	=	=	=											-5						1.17	N
1170	2	chr1	56995	56995	half	ref			?	26	0									2					2	1.17	N
1171	2	chr1	56995	57029	hom	ref	=	=	=											2						1.17	N
1172	2	chr1	57029	57072	no-call	complex	=	?	?											-10						1.17	N
1173	2	chr1	57072	57242	hom	ref	=	=	=											28						1.17	N
1174	2	chr1	57242	57249	no-call	complex	=	?	?											0						1.17	N
1175	2	chr1	57249	57372	hom	ref	=	=	=											24						1.17	N
1176	2	chr1	57372	57379	no-call	complex	=	?	?											-49						1.17	N
1177	2	chr1	57379	57432	hom	ref	=	=	=											-23						1.17	N
1178	2	chr1	57432	57432	half	ref			?	35	0									74					2	1.17	N
1179	2	chr1	57432	57524	hom	ref	=	=	=											-6						1.17	N
1180	2	chr1	57524	57525	half	ref	A	A	N	121	121									-6					2	1.17	N
1181	2	chr1	57525	57618	hom	ref	=	=	=											-6						1.17	N
1182	2	chr1	57618	57644	no-call	complex	=	?	?											-22						1.17	N
1183	2	chr1	57644	57678	hom	ref	=	=	=											19						1.17	N
1184	2	chr1	57678	57685	no-call	complex	=	?	?											-11						1.17	N
1185	2	chr1	57685	57814	hom	ref	=	=	=											43						1.17	N
1186	2	chr1	57814	57858	no-call	complex	=	?	?											-67						1.17	N
1187	2	chr1	57858	57951	hom	ref	=	=	=											-148						1.17	N
1188	2	chr1	57951	57952	hom	snp	A	C	C	72	157			dbsnp.100:rs2691334	505	2	2	0	2	-148					2	1.17	N
1189	2	chr1	57952	57995	hom	ref	=	=	=											-148						1.17	N
1190	2	chr1	57995	58002	no-call	complex	=	?	?											-27						1.17	N
1191	2	chr1	58002	58210	hom	ref	=	=	=											-327						1.17	N
1192	2	chr1	58210	58211	hom	snp	A	G	G	98	114			dbsnp.100:rs2691335	507	11	11	0	11	-327					2	1.17	N
1193	2	chr1	58211	58405	hom	ref	=	=	=											-327						1.17	N
1194	2	chr1	58405	58451	no-call	complex	=	?	?											-89						1.17	N
1195	2	chr1	58451	58483	hom	ref	=	=	=											5						1.17	N
1196	2	chr1	58483	58484	half	ref	G	G	N	88	120									5					2	1.17	N
1197	2	chr1	58484	58777	hom	ref	=	=	=											5						1.17	N
1198	2	chr1	58777	58815	no-call	complex	=	?	?											-105						1.17	N
1199	2	chr1	58815	59050	hom	ref	=	=	=											-118						1.17	N
1200	2	chr1	59050	59051	het-ref	snp	A	G	A	66	91			dbsnp.100:rs2691352	510	6	21	0	27	-118					2	1.17	N
1201	2	chr1	59051	59168	hom	ref	=	=	=											-118						1.17	N
1202	2	chr1	59168	59169	half	ref	A	A	?	121	0									-4				L2a:L2:37.1	2	1.17	N
1203	2	chr1	59169	59254	hom	ref	=	=	=											-4						1.17	N
1204	2	chr1	59254	59279	no-call	complex	=	?	?											-3						1.17	N
1205	2	chr1	59279	59343	hom	ref	=	=	=											-47						1.17	N
1206	2	chr1	59343	59344	het-ref	snp	C	T	C	57	120			dbsnp.100:rs2854667	511	25	23	0	48	-47					2	1.17	N
1207	2	chr1	59344	59497	hom	ref	=	=	=											-98						1.17	N
1208	2	chr1	59497	59498	het-ref	snp	T	C	T	74	120			dbsnp.100:rs2854666;dbsnp.131:rs76479716	512	12	15	0	27	-98					2	1.17	N
1209	2	chr1	59498	59584	hom	ref	=	=	=											-98						1.17	N
1210	2	chr1	59584	59598	no-call	complex	=	?	?											-18						1.17	N
1211	2	chr1	59598	60268	hom	ref	=	=	=											-17						1.17	N
1212	2	chr1	60268	60282	no-call	complex	=	?	?											-155						1.17	N
1213	2	chr1	60282	60404	hom	ref	=	=	=											19						1.17	N
1214	2	chr1	60404	60436	no-call	complex	=	?	?											-96						1.17	N
1215	2	chr1	60436	60559	hom	ref	=	=	=											7						1.17	N
1216	2	chr1	60559	60560	half	ref	T	T	?	27	0									7				MER47A:TcMar-Tigger:35.4	2	1.17	N
1217	2	chr1	60560	60691	hom	ref	=	=	=											7						1.17	N
1218	2	chr1	60691	60729	no-call	complex	=	?	?											-64						1.17	N
1219	2	chr1	60729	60784	hom	ref	=	=	=											14						1.17	N
1220	2	chr1	60784	60797	no-call	complex	AAAAATACATGCA	AAAAATNCATGCA	?	46	0				516					-72					2	1.17	N
1221	2	chr1	60797	60808	hom	ref	=	=	=											17						1.17	N
1222	2	chr1	60808	60813	half	ref	TAGAA	TAGAA	NANAN	41	97				516					16					2	1.17	N
1223	2	chr1	60813	60828	hom	ref	=	=	=											-64						1.17	N
1224	2	chr1	60828	60829	het-ref	snp	C	T	C	60	97			dbsnp.100:rs2691284	516	1	11	0	12	-64					2	1.17	N
1225	2	chr1	60829	60905	hom	ref	=	=	=											-64						1.17	N
1226	2	chr1	60905	60912	no-call	complex	=	?	?											-94						1.17	N
1227	2	chr1	60912	61090	hom	ref	=	=	=											6						1.17	N
1228	2	chr1	61090	61093	half	ref	TCA	TCA	?	64	0									6					2	1.17	N
1229	2	chr1	61093	61285	hom	ref	=	=	=											12						1.17	N
1230	2	chr1	61285	61293	no-call	complex	=	?	?											-45						1.17	N
1231	2	chr1	61293	61353	hom	ref	=	=	=											7						1.17	N
1232	2	chr1	61353	61353	half	ref			?	35	0	581	582							7					2	1.17	N
1233	2	chr1	61353	61359	hom	ref	=	=	=											7						1.17	N
1234	2	chr1	61359	61364	half	ref	AATAT	AATAT	?	45	0	581	582							7					2	1.17	N
1235	2	chr1	61364	61416	hom	ref	=	=	=											1						1.17	N
1236	2	chr1	61416	61417	half	ref	T	T	N	79	79	583	584		518					1					2	1.17	N
1237	2	chr1	61417	61428	hom	ref	=	=	=											1						1.17	N
1238	2	chr1	61428	61429	half	ref	T	T	N	24	79	583	584		518					-11					2	1.17	N
1239	2	chr1	61429	61441	hom	ref	=	=	=											-134						1.17	N
1240	2	chr1	61441	61442	hom	snp	A	G	G	23	79			dbsnp.100:rs2531261;dbsnp.129:rs62637818;dbsnp.131:rs74970982	518	8	8	0	8	-134					2	1.17	N
1241	2	chr1	61442	61452	hom	ref	=	=	=											-134						1.17	N
1242	2	chr1	61452	61457	half	ref	TAATT	TAATT	NANTN	24	132									7					2	1.17	N
1243	2	chr1	61457	61476	hom	ref	=	=	=											17						1.17	N
1244	2	chr1	61476	61511	no-call	complex	=	?	?											-2						1.17	N
1245	2	chr1	61511	61537	hom	ref	=	=	=											-8						1.17	N
1246	2	chr1	61537	61538	half	ref	G	G	N	120	120	587	588							-8					2	1.17	N
1247	2	chr1	61538	61556	hom	ref	=	=	=											-8						1.17	N
1248	2	chr1	61556	61561	half	ref	TTAAT	TTAAT	?	53	0	587	588							6					2	1.17	N
1249	2	chr1	61561	61677	hom	ref	=	=	=											15						1.17	N
1250	2	chr1	61677	61709	no-call	complex	=	?	?											2						1.17	N
1251	2	chr1	61709	61847	hom	ref	=	=	=											13						1.17	N
1252	2	chr1	61847	61886	no-call	complex	=	?	?											-27						1.17	N
1253	2	chr1	61886	61986	hom	ref	=	=	=											-2						1.17	N
1254	2	chr1	61986	61987	half	ref	A	A	?	36	0	593	594							-2				AluSc:Alu:8.4	2	1.17	N
1255	2	chr1	61987	61996	hom	ref	=	=	=											-2						1.17	N
1256	2	chr1	61996	62009	half	ref	GACTACAGGCATG	GACTACAGGCATG	?	45	0	593	594							9				AluSc:Alu:8.4	2	1.17	N
1257	2	chr1	62009	62136	hom	ref	=	=	=											18						1.17	N
1258	2	chr1	62136	62143	no-call	complex	=	?	?											-49						1.17	N
1259	2	chr1	62143	62176	hom	ref	=	=	=											52						1.17	N
1260	2	chr1	62176	62206	no-call	complex	=	?	?											-25						1.17	N
1261	2	chr1	62206	62235	hom	ref	=	=	=											18						1.17	N
1262	2	chr1	62235	62250	no-call	complex	=	?	?											-60						1.17	N
1263	2	chr1	62250	62422	hom	ref	=	=	=											15						1.17	N
1264	2	chr1	62422	62429	no-call	complex	=	?	?											-37						1.17	N
1265	2	chr1	62429	62574	hom	ref	=	=	=											29						1.17	N
1266	2	chr1	62574	62581	no-call	complex	=	?	?											-15						1.17	N
1267	2	chr1	62581	62624	hom	ref	=	=	=											45						1.17	N
1268	2	chr1	62624	62647	no-call	complex	=	?	?											-92						1.17	N
1269	2	chr1	62647	62703	hom	ref	=	=	=											23						1.17	N
1270	2	chr1	62703	62710	no-call	complex	=	?	?											-25						1.17	N
1271	2	chr1	62710	62918	hom	ref	=	=	=											12						1.17	N
1272	2	chr1	62918	62928	no-call	complex	=	?	?											-16						1.17	N
1273	2	chr1	62928	63029	hom	ref	=	=	=											41						1.17	N
1274	2	chr1	63029	63077	no-call	complex	=	?	?											-49						1.17	N
1275	2	chr1	63077	63235	hom	ref	=	=	=											27						1.17	N
1276	2	chr1	63235	63271	no-call	complex	=	?	?											-59						1.17	N
1277	2	chr1	63271	63300	hom	ref	=	=	=											14						1.17	N
1278	2	chr1	63300	63335	no-call	complex	=	?	?											-4						1.17	N
1279	2	chr1	63335	63420	hom	ref	=	=	=											26						1.17	N
1280	2	chr1	63420	63438	no-call	complex	=	?	?											-238						1.17	N
1281	2	chr1	63438	63523	hom	ref	=	=	=											29						1.17	N
1282	2	chr1	63523	63530	no-call	complex	=	?	?											-14						1.17	N
1283	2	chr1	63530	63666	hom	ref	=	=	=											37						1.17	N
1284	2	chr1	63666	63673	no-call	complex	=	?	?											-18						1.17	N
1285	2	chr1	63673	63788	hom	ref	=	=	=											32						1.17	N
1286	2	chr1	63788	63795	no-call	complex	=	?	?											-26						1.17	N
1287	2	chr1	63795	63876	hom	ref	=	=	=											31						1.17	N
1288	2	chr1	63876	63914	no-call	complex	=	?	?											-174						1.17	N
1289	2	chr1	63914	64121	hom	ref	=	=	=											15						1.17	N
1290	2	chr1	64121	64160	no-call	complex	=	?	?											-37						1.17	N
1291	2	chr1	64160	64235	hom	ref	=	=	=											8						1.17	N
1292	2	chr1	64235	64236	half	ref	T	T	N	123	123									8	79501:NM_001005484.1:OR4F5::::TSS-UPSTREAM:UNKNOWN-INC	79501:NM_001005484.1:OR4F5::::TSS-UPSTREAM:UNKNOWN-INC			2	1.17	N
1293	2	chr1	64236	64287	hom	ref	=	=	=											8						1.17	N
1294	2	chr1	64287	64337	no-call	complex	=	?	?											4						1.17	N
1295	2	chr1	64337	64581	hom	ref	=	=	=											10						1.17	N
1296	2	chr1	64581	64599	no-call	complex	=	?	?											6						1.17	N
1297	2	chr1	64599	64609	hom	ref	=	=	=											18						1.17	N
1298	2	chr1	64609	64632	no-call	complex	=	?	?											-44						1.17	N
1299	2	chr1	64632	64711	hom	ref	=	=	=											9						1.17	N
1300	2	chr1	64711	64712	half	ref	T	T	?	120	0									9	79501:NM_001005484.1:OR4F5::::TSS-UPSTREAM:UNKNOWN-INC	79501:NM_001005484.1:OR4F5::::TSS-UPSTREAM:UNKNOWN-INC			2	1.17	N
1301	2	chr1	64712	64831	hom	ref	=	=	=											-14						1.17	N
1302	2	chr1	64831	64832	half	ref	C	C	N	120	156									-14	79501:NM_001005484.1:OR4F5::::TSS-UPSTREAM:UNKNOWN-INC	79501:NM_001005484.1:OR4F5::::TSS-UPSTREAM:UNKNOWN-INC			2	1.17	N
1303	2	chr1	64832	64923	hom	ref	=	=	=											-14						1.17	N
1304	2	chr1	64923	64930	no-call	complex	=	?	?											-17	79501:NM_001005484.1:OR4F5::::TSS-UPSTREAM:UNKNOWN-INC	79501:NM_001005484.1:OR4F5::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
1305	2	chr1	64930	64972	hom	ref	=	=	=											39						1.17	N
1306	2	chr1	64972	64989	no-call	complex	=	?	?											-121						1.17	N
1307	2	chr1	64989	65249	hom	ref	=	=	=											5						1.17	N
1308	2	chr1	65249	65256	no-call	complex	=	?	?											-89	79501:NM_001005484.1:OR4F5::::TSS-UPSTREAM:UNKNOWN-INC	79501:NM_001005484.1:OR4F5::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
1309	2	chr1	65256	65924	hom	ref	=	=	=											-2						1.17	N
1310	2	chr1	65924	65927	half	ref	TTA	TTA	?	36	0									3	79501:NM_001005484.1:OR4F5::::TSS-UPSTREAM:UNKNOWN-INC	79501:NM_001005484.1:OR4F5::::TSS-UPSTREAM:UNKNOWN-INC			2	1.17	N
1311	2	chr1	65927	66002	hom	ref	=	=	=											-31						1.17	N
1312	2	chr1	66002	66033	half	ref	TTTTACAGCTTTTGAAAGAATAAACTCATTT	TTTTACAGCTTTTGAAAGAATAAACTCATTT	?TTT?GCTT?TGAA?GAA?	40	80				535					-35	79501:NM_001005484.1:OR4F5::::TSS-UPSTREAM:UNKNOWN-INC	79501:NM_001005484.1:OR4F5::::TSS-UPSTREAM:UNKNOWN-INC		MIR3:MIR:38.5	2	1.17	N
1313	2	chr1	66033	66077	hom	ref	=	=	=											14						1.17	N
1314	2	chr1	66077	66098	no-call	complex	=	?	?											1						1.17	N
1315	2	chr1	66098	66130	hom	ref	=	=	=											3						1.17	N
1316	2	chr1	66130	66131	half	ref	C	C	N	36	196									3	79501:NM_001005484.1:OR4F5::::TSS-UPSTREAM:UNKNOWN-INC	79501:NM_001005484.1:OR4F5::::TSS-UPSTREAM:UNKNOWN-INC		MIR3:MIR:38.5	2	1.17	N
1317	2	chr1	66131	66156	hom	ref	=	=	=											3						1.17	N
1318	2	chr1	66156	66636	no-call	complex	=	?	?											-7						1.17	N
1319	2	chr1	66636	66647	hom	ref	=	=	=											14						1.17	N
1320	2	chr1	66647	66654	no-call	complex	=	?	?											2	79501:NM_001005484.1:OR4F5::::TSS-UPSTREAM:UNKNOWN-INC	79501:NM_001005484.1:OR4F5::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
1321	2	chr1	66654	66714	hom	ref	=	=	=											16						1.17	N
1322	2	chr1	66714	66743	no-call	complex	=	?	?											-22						1.17	N
1323	2	chr1	66743	66762	hom	ref	=	=	=											10						1.17	N
1324	2	chr1	66762	66817	no-call	complex	=	?	?											-14						1.17	N
1325	2	chr1	66817	66926	hom	ref	=	=	=											10						1.17	N
1326	2	chr1	66926	66933	no-call	complex	=	?	?											-162	79501:NM_001005484.1:OR4F5::::TSS-UPSTREAM:UNKNOWN-INC	79501:NM_001005484.1:OR4F5::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
1327	2	chr1	66933	67173	hom	ref	=	=	=											23						1.17	N
1328	2	chr1	67173	67188	no-call	complex	=	?	?											-59						1.17	N
1329	2	chr1	67188	67219	hom	ref	=	=	=											17						1.17	N
1330	2	chr1	67219	67245	no-call	complex	=	?	?											-80						1.17	N
1331	2	chr1	67245	67325	hom	ref	=	=	=											29						1.17	N
1332	2	chr1	67325	67354	no-call	complex	=	?	?											-87						1.17	N
1333	2	chr1	67354	67601	hom	ref	=	=	=											41						1.17	N
1334	2	chr1	67601	67645	no-call	complex	=	?	?											-51						1.17	N
1335	2	chr1	67645	68305	hom	ref	=	=	=											17						1.17	N
1336	2	chr1	68305	68306	het-ref	snp	C	T	C	44	44	618	617	dbsnp.101:rs3020702	543	27	20	0	47	17	79501:NM_001005484.1:OR4F5::::TSS-UPSTREAM:UNKNOWN-INC	79501:NM_001005484.1:OR4F5::::TSS-UPSTREAM:UNKNOWN-INC			2	1.17	N
1337	2	chr1	68306	68315	hom	ref	=	=	=											6						1.17	N
1338	2	chr1	68315	68316	het-ref	snp	T	C	T	44	44	618	617	dbsnp.101:rs2907081	543	27	20	0	47	6	79501:NM_001005484.1:OR4F5::::TSS-UPSTREAM:UNKNOWN-INC	79501:NM_001005484.1:OR4F5::::TSS-UPSTREAM:UNKNOWN-INC			2	1.17	N
1339	2	chr1	68316	68612	hom	ref	=	=	=											6						1.17	N
1340	2	chr1	68612	68628	no-call	complex	=	?	?											-107						1.17	N
1341	2	chr1	68628	68704	hom	ref	=	=	=											8						1.17	N
1342	2	chr1	68704	68705	half	ref	T	T	N	69	133									8	79501:NM_001005484.1:OR4F5::::TSS-UPSTREAM:UNKNOWN-INC	79501:NM_001005484.1:OR4F5::::TSS-UPSTREAM:UNKNOWN-INC			2	1.17	N
1343	2	chr1	68705	68845	hom	ref	=	=	=											8						1.17	N
1344	2	chr1	68845	68852	no-call	complex	=	?	?											-11	79501:NM_001005484.1:OR4F5::::TSS-UPSTREAM:UNKNOWN-INC	79501:NM_001005484.1:OR4F5::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
1345	2	chr1	68852	68885	hom	ref	=	=	=											47						1.17	N
1346	2	chr1	68885	68902	no-call	complex	=	?	?											-212						1.17	N
1347	2	chr1	68902	69452	hom	ref	=	=	=											-57						1.17	N
1348	2	chr1	69452	69453	het-ref	snp	G	A	G	61	121			dbsnp.100:rs2854682	546	6	37	0	43	-57	79501:NM_001005484.1:OR4F5:PFAM:PF00001:7tm_1:CDS:COMPATIBLE	79501:NM_001005484.1:OR4F5:PFAM:PF00001:7tm_1:CDS:NO-CHANGE			2	1.17	N
1349	2	chr1	69453	69510	hom	ref	=	=	=											-307						1.17	N
1350	2	chr1	69510	69511	hom	snp	A	G	G	123	123			dbsnp.100:rs2691305;dbsnp.131:rs75062661	547	3	3	0	3	-307	79501:NM_001005484.1:OR4F5:PFAM:PF00001:7tm_1:CDS:MISSENSE	79501:NM_001005484.1:OR4F5:PFAM:PF00001:7tm_1:CDS:MISSENSE			2	1.17	N
1351	2	chr1	69511	69551	hom	ref	=	=	=											-307						1.17	N
1352	2	chr1	69551	69552	het-ref	snp	G	C	G	98	98	623	624	dbsnp.100:rs2531266;dbsnp.129:rs55874132	548	4	27	0	31	-1	79501:NM_001005484.1:OR4F5:PFAM:PF00001:7tm_1:CDS:COMPATIBLE	79501:NM_001005484.1:OR4F5:PFAM:PF00001:7tm_1:CDS:NO-CHANGE			2	1.17	N
1353	2	chr1	69552	69568	hom	ref	=	=	=											-52						1.17	N
1354	2	chr1	69568	69569	het-ref	snp	T	C	T	98	98	623	624	dbsnp.100:rs2531267	548	3	29	0	32	-52	79501:NM_001005484.1:OR4F5:PFAM:PF00001:7tm_1:CDS:MISSENSE	79501:NM_001005484.1:OR4F5:PFAM:PF00001:7tm_1:CDS:NO-CHANGE			2	1.17	N
1355	2	chr1	69569	69750	hom	ref	=	=	=											-52						1.17	N
1356	2	chr1	69750	69751	half	ref	C	C	N	118	121									9	79501:NM_001005484.1:OR4F5:PFAM:PF00001:7tm_1:CDS:NO-CHANGE	79501:NM_001005484.1:OR4F5:PFAM:PF00001:7tm_1:CDS:UNKNOWN-VNC			2	1.17	N
1357	2	chr1	69751	69964	hom	ref	=	=	=											9						1.17	N
1358	2	chr1	69964	69971	no-call	complex	=	?	?											5	79501:NM_001005484.1:OR4F5::::CDS:UNKNOWN-VNC	79501:NM_001005484.1:OR4F5::::CDS:UNKNOWN-VNC				1.17	N
1359	2	chr1	69971	70241	hom	ref	=	=	=											25						1.17	N
1360	2	chr1	70241	70249	no-call	complex	=	?	?											36						1.17	N
1361	2	chr1	70249	70296	hom	ref	=	=	=											20						1.17	N
1362	2	chr1	70296	70320	no-call	complex	=	?	?											-325						1.17	N
1363	2	chr1	70320	70348	hom	ref	=	=	=											20						1.17	N
1364	2	chr1	70348	70348	half	ref			?	29	0	627	628							20				AT_rich:Low_complexity:0.0	3	1.17	N
1365	2	chr1	70348	70350	hom	ref	=	=	=											-5						1.17	N
1366	2	chr1	70350	70351	half	ref	T	T	?	30	0	627	628							-5				AT_rich:Low_complexity:0.0	3	1.17	N
1367	2	chr1	70351	70357	hom	ref	=	=	=											-5						1.17	N
1368	2	chr1	70357	70361	half	ref	AAAT	AAAT	?	24	0	627	628							-17				AT_rich:Low_complexity:0.0	3	1.17	N
1369	2	chr1	70361	70384	hom	ref	=	=	=											-17						1.17	N
1370	2	chr1	70384	70425	no-call	complex	=	?	?											-37						1.17	N
1371	2	chr1	70425	70600	hom	ref	=	=	=											26						1.17	N
1372	2	chr1	70600	70631	no-call	complex	=	?	?											-94						1.17	N
1373	2	chr1	70631	70660	hom	ref	=	=	=											43						1.17	N
1374	2	chr1	70660	70669	no-call	complex	=	?	?											-36						1.17	N
1375	2	chr1	70669	71574	hom	ref	=	=	=											7						1.17	N
1376	2	chr1	71574	71580	half	ref	TTCAAA	TTCAAA	?	30	0									6				L1MC4a:L1:44.9	3	1.17	N
1377	2	chr1	71580	71674	hom	ref	=	=	=											-20						1.17	N
1378	2	chr1	71674	71676	half	ref	AA	AA	?	24	0	631	632							6					3	1.17	N
1379	2	chr1	71676	71681	hom	ref	=	=	=											12						1.17	N
1380	2	chr1	71681	71681	half	ref			?	27	0	631	632							24					3	1.17	N
1381	2	chr1	71681	71688	hom	ref	=	=	=											23						1.17	N
1382	2	chr1	71688	71695	half	ref	CTATGAG	CTATGAG	?	26	0	631	632							18					3	1.17	N
1383	2	chr1	71695	71709	hom	ref	=	=	=											-37						1.17	N
1384	2	chr1	71709	71710	half	ref	A	A	N	47	47									-37					3	1.17	N
1385	2	chr1	71710	71744	hom	ref	=	=	=											-37						1.17	N
1386	2	chr1	71744	71745	half	ref	T	T	N	120	120									6				L1MC4a:L1:38.2	3	1.17	N
1387	2	chr1	71745	71799	hom	ref	=	=	=											-8						1.17	N
1388	2	chr1	71799	71799	half	ref			?	25	0									-8				L1MC4a:L1:38.2	3	1.17	N
1389	2	chr1	71799	71842	hom	ref	=	=	=											-8						1.17	N
1390	2	chr1	71842	71879	no-call	complex	=	?	?											-27						1.17	N
1391	2	chr1	71879	71887	hom	ref	=	=	=											10						1.17	N
1392	2	chr1	71887	71905	no-call	complex	=	?	?											-14						1.17	N
1393	2	chr1	71905	72001	hom	ref	=	=	=											11						1.17	N
1394	2	chr1	72001	72004	half	ref	ATT	ATT	NNN	20	120									8					3	1.17	N
1395	2	chr1	72004	72082	hom	ref	=	=	=											14						1.17	N
1396	2	chr1	72082	72167	no-call	complex	=	?	?											-39						1.17	N
1397	2	chr1	72167	72183	hom	ref	=	=	=											26						1.17	N
1398	2	chr1	72183	72200	no-call	complex	=	?	?											-5						1.17	N
1399	2	chr1	72200	72247	hom	ref	=	=	=											19						1.17	N
1400	2	chr1	72247	72254	no-call	complex	=	?	?											-23						1.17	N
1401	2	chr1	72254	72399	hom	ref	=	=	=											-13						1.17	N
1402	2	chr1	72399	72422	no-call	complex	=	?	?											-35						1.17	N
1403	2	chr1	72422	72452	hom	ref	=	=	=											23						1.17	N
1404	2	chr1	72452	72459	no-call	complex	=	?	?											-199						1.17	N
1405	2	chr1	72459	72486	hom	ref	=	=	=											16						1.17	N
1406	2	chr1	72486	72526	no-call	complex	=	?	?											-639						1.17	N
1407	2	chr1	72526	72582	hom	ref	=	=	=											-1						1.17	N
1408	2	chr1	72582	72583	half	ref	C	C	N	120	120	639	640							-1				L1PA7:L1:7.3	3	1.17	N
1409	2	chr1	72583	72586	hom	ref	=	=	=											-1						1.17	N
1410	2	chr1	72586	72586	half	ref			?	28	0	639	640							3				L1PA7:L1:7.3	3	1.17	N
1411	2	chr1	72586	72648	hom	ref	=	=	=											3						1.17	N
1412	2	chr1	72648	72655	no-call	complex	=	?	?											-85						1.17	N
1413	2	chr1	72655	72693	hom	ref	=	=	=											53						1.17	N
1414	2	chr1	72693	72708	no-call	complex	=	?	?											-59						1.17	N
1415	2	chr1	72708	72781	hom	ref	=	=	=											23						1.17	N
1416	2	chr1	72781	72791	no-call	complex	=	?	?											-195						1.17	N
1417	2	chr1	72791	72858	hom	ref	=	=	=											13						1.17	N
1418	2	chr1	72858	72865	no-call	complex	=	?	?											-489						1.17	N
1419	2	chr1	72865	73084	hom	ref	=	=	=											17						1.17	N
1420	2	chr1	73084	73091	no-call	complex	=	?	?											-147						1.17	N
1421	2	chr1	73091	73196	hom	ref	=	=	=											1						1.17	N
1422	2	chr1	73196	73206	no-call	complex	=	?	?											-39						1.17	N
1423	2	chr1	73206	73245	hom	ref	=	=	=											16						1.17	N
1424	2	chr1	73245	73252	no-call	complex	=	?	?											-10						1.17	N
1425	2	chr1	73252	73634	hom	ref	=	=	=											0						1.17	N
1426	2	chr1	73634	73635	half	ref	T	T	N	111	111	643	644							3				L1PA16:L1:18.4	3	1.17	N
1427	2	chr1	73635	73655	hom	ref	=	=	=											3						1.17	N
1428	2	chr1	73655	73656	half	ref	C	C	N	111	111	643	644							9				L1PA16:L1:18.4	3	1.17	N
1429	2	chr1	73656	73658	hom	ref	=	=	=											9						1.17	N
1430	2	chr1	73658	73659	half	ref	T	T	N	22	54	643	644							17				L1PA16:L1:18.4	3	1.17	N
1431	2	chr1	73659	73688	hom	ref	=	=	=											10						1.17	N
1432	2	chr1	73688	73709	no-call	complex	=	?	?											-69						1.17	N
1433	2	chr1	73709	73739	hom	ref	=	=	=											2						1.17	N
1434	2	chr1	73739	73740	half	ref	T	T	N	36	122									2				L1MC4a:L1:31.9	3	1.17	N
1435	2	chr1	73740	73770	hom	ref	=	=	=											2						1.17	N
1436	2	chr1	73770	73804	half	ref	ATAAAATATCAAATATCTGACCTCAATATTTGAT	ATAAAATATCAAATATCTGACCTCAATATTTGAT	?	21	0									-4				L1MC4a:L1:31.9	3	1.17	N
1437	2	chr1	73804	73817	hom	ref	=	=	=											10						1.17	N
1438	2	chr1	73817	73893	no-call	complex	=	?	?											-44						1.17	N
1439	2	chr1	73893	73898	hom	ref	=	=	=											14						1.17	N
1440	2	chr1	73898	73926	no-call	complex	=	?	?											-34						1.17	N
1441	2	chr1	73926	73973	hom	ref	=	=	=											13						1.17	N
1442	2	chr1	73973	73981	no-call	complex	=	?	?											6						1.17	N
1443	2	chr1	73981	73986	hom	ref	=	=	=											11						1.17	N
1444	2	chr1	73986	74040	no-call	complex	=	?	?											-60						1.17	N
1445	2	chr1	74040	74062	hom	ref	=	=	=											13						1.17	N
1446	2	chr1	74062	74326	no-call	complex	=	?	?											-49						1.17	N
1447	2	chr1	74326	74335	hom	ref	=	=	=											12						1.17	N
1448	2	chr1	74335	74370	no-call	complex	=	?	?											-13						1.17	N
1449	2	chr1	74370	74395	hom	ref	=	=	=											11						1.17	N
1450	2	chr1	74395	74419	no-call	complex	=	?	?											-37						1.17	N
1451	2	chr1	74419	74424	hom	ref	=	=	=											10						1.17	N
1452	2	chr1	74424	74459	no-call	complex	=	?	?											-7						1.17	N
1453	2	chr1	74459	74464	hom	ref	=	=	=											16						1.17	N
1454	2	chr1	74464	74536	no-call	complex	=	?	?											-16						1.17	N
1455	2	chr1	74536	74551	hom	ref	=	=	=											10						1.17	N
1456	2	chr1	74551	74594	no-call	complex	=	?	?											-9						1.17	N
1457	2	chr1	74594	74632	hom	ref	=	=	=											10						1.17	N
1458	2	chr1	74632	74730	no-call	complex	=	?	?											-175						1.17	N
1459	2	chr1	74730	74736	hom	ref	=	=	=											23						1.17	N
1460	2	chr1	74736	74747	half	ref	TGGATATTAGC	TGGATATTAGC	?	36	0									7				L1PA2:L1:1.6	3	1.17	N
1461	2	chr1	74747	74758	hom	ref	=	=	=											13						1.17	N
1462	2	chr1	74758	74759	no-call	complex	T	N	N	36	36	659	660							13				L1PA2:L1:1.6	3	1.17	N
1463	2	chr1	74759	74763	hom	ref	=	=	=											13						1.17	N
1464	2	chr1	74763	74782	no-call	complex	AGGTTGCAAAAATTTTCTC	AGGTTGC?AAAAATTTTCTC	?	0	0	659	660							2				L1PA2:L1:1.6	3	1.17	N
1465	2	chr1	74782	74803	hom	ref	=	=	=											1						1.17	N
1466	2	chr1	74803	74804	half	ref	C	C	N	121	121	661	662							1				L1PA2:L1:1.6	3	1.17	N
1467	2	chr1	74804	74814	hom	ref	=	=	=											-5						1.17	N
1468	2	chr1	74814	74815	half	ref	T	T	N	101	121	661	662							-5				L1PA2:L1:1.6	3	1.17	N
1469	2	chr1	74815	74824	hom	ref	=	=	=											-5						1.17	N
1470	2	chr1	74824	74886	no-call	complex	=	?	?											-12						1.17	N
1471	2	chr1	74886	74926	hom	ref	=	=	=											13						1.17	N
1472	2	chr1	74926	74983	no-call	complex	=	?	?											-5						1.17	N
1473	2	chr1	74983	74991	hom	ref	=	=	=											22						1.17	N
1474	2	chr1	74991	75019	no-call	complex	=	?	?											-77						1.17	N
1475	2	chr1	75019	75086	hom	ref	=	=	=											18						1.17	N
1476	2	chr1	75086	75281	no-call	complex	=	?	?											-47						1.17	N
1477	2	chr1	75281	75294	hom	ref	=	=	=											19						1.17	N
1478	2	chr1	75294	75318	no-call	complex	=	?	?											-52						1.17	N
1479	2	chr1	75318	75323	hom	ref	=	=	=											13						1.17	N
1480	2	chr1	75323	75353	no-call	complex	=	?	?											-47						1.17	N
1481	2	chr1	75353	75359	hom	ref	=	=	=											11						1.17	N
1482	2	chr1	75359	75389	no-call	complex	=	?	?											-54						1.17	N
1483	2	chr1	75389	75396	hom	ref	=	=	=											10						1.17	N
1484	2	chr1	75396	76267	no-call	complex	=	?	?											-47						1.17	N
1485	2	chr1	76267	76274	hom	ref	=	=	=											11						1.17	N
1486	2	chr1	76274	76312	no-call	complex	=	?	?											-25						1.17	N
1487	2	chr1	76312	76337	hom	ref	=	=	=											14						1.17	N
1488	2	chr1	76337	76348	no-call	complex	=	?	?											-56						1.17	N
1489	2	chr1	76348	76512	hom	ref	=	=	=											-49						1.17	N
1490	2	chr1	76512	76514	half	ref	CT	CT	?	49	0									-49				L1PA2:L1:2.1	3	1.17	N
1491	2	chr1	76514	76587	hom	ref	=	=	=											14						1.17	N
1492	2	chr1	76587	76603	no-call	complex	=	?	?											-20						1.17	N
1493	2	chr1	76603	76623	hom	ref	=	=	=											19						1.17	N
1494	2	chr1	76623	76656	no-call	complex	=	?	?											-55						1.17	N
1495	2	chr1	76656	76928	hom	ref	=	=	=											15						1.17	N
1496	2	chr1	76928	76943	no-call	complex	=	?	?											-16						1.17	N
1497	2	chr1	76943	77027	hom	ref	=	=	=											15						1.17	N
1498	2	chr1	77027	77038	no-call	complex	=	?	?											27						1.17	N
1499	2	chr1	77038	77170	hom	ref	=	=	=											14						1.17	N
1500	2	chr1	77170	77207	no-call	complex	=	?	?											-34						1.17	N
1501	2	chr1	77207	77335	hom	ref	=	=	=											17						1.17	N
1502	2	chr1	77335	77371	no-call	complex	=	?	?											-188						1.17	N
1503	2	chr1	77371	77413	hom	ref	=	=	=											10						1.17	N
1504	2	chr1	77413	77435	no-call	complex	=	?	?											-8						1.17	N
1505	2	chr1	77435	77461	hom	ref	=	=	=											-86						1.17	N
1506	2	chr1	77461	77462	hom	snp	G	A	A	26	28			dbsnp.100:rs2462497	590	4	4	0	4	-86					3	1.17	N
1507	2	chr1	77462	77466	hom	ref	=	=	=											-86						1.17	N
1508	2	chr1	77466	77469	half	ref	ACA	ACA	NCN	30	91				590					4					3	1.17	N
1509	2	chr1	77469	77546	hom	ref	=	=	=											4						1.17	N
1510	2	chr1	77546	77621	no-call	complex	=	?	?											-101						1.17	N
1511	2	chr1	77621	77784	hom	ref	=	=	=											6						1.17	N
1512	2	chr1	77784	77789	half	ref	TCAGA	TCAGA	NCNGN	21	78	675	676							6					3	1.17	N
1513	2	chr1	77789	77796	hom	ref	=	=	=											12						1.17	N
1514	2	chr1	77796	77797	half	ref	A	A	N	120	120	675	676							20					3	1.17	N
1515	2	chr1	77797	77801	hom	ref	=	=	=											19						1.17	N
1516	2	chr1	77801	77802	half	ref	T	T	N	60	120	675	676							2					3	1.17	N
1517	2	chr1	77802	77806	hom	ref	=	=	=											2						1.17	N
1518	2	chr1	77806	77807	half	ref	T	T	?	120	0	675	676							2					3	1.17	N
1519	2	chr1	77807	77873	hom	ref	=	=	=											-7						1.17	N
1520	2	chr1	77873	77873	half	ref			?	29	0									46					3	1.17	N
1521	2	chr1	77873	77915	hom	ref	=	=	=											21						1.17	N
1522	2	chr1	77915	77922	no-call	complex	=	?	?											-18						1.17	N
1523	2	chr1	77922	77953	hom	ref	=	=	=											12						1.17	N
1524	2	chr1	77953	77964	no-call	complex	=	?	?											-30						1.17	N
1525	2	chr1	77964	78034	hom	ref	=	=	=											8						1.17	N
1526	2	chr1	78034	78035	half	ref	G	G	N	30	205									8				L1MC4a:L1:35.4	3	1.17	N
1527	2	chr1	78035	78085	hom	ref	=	=	=											8						1.17	N
1528	2	chr1	78085	78129	no-call	complex	=	?	?											-16						1.17	N
1529	2	chr1	78129	78180	hom	ref	=	=	=											13						1.17	N
1530	2	chr1	78180	78229	no-call	complex	=	?	?											-82						1.17	N
1531	2	chr1	78229	78387	hom	ref	=	=	=											12						1.17	N
1532	2	chr1	78387	78404	no-call	complex	=	?	?											2						1.17	N
1533	2	chr1	78404	78431	hom	ref	=	=	=											10						1.17	N
1534	2	chr1	78431	78479	no-call	complex	=	?	?											-15						1.17	N
1535	2	chr1	78479	78506	hom	ref	=	=	=											50						1.17	N
1536	2	chr1	78506	78513	no-call	complex	=	?	?											-47						1.17	N
1537	2	chr1	78513	78629	hom	ref	=	=	=											17						1.17	N
1538	2	chr1	78629	78662	no-call	complex	=	?	?											-11						1.17	N
1539	2	chr1	78662	78732	hom	ref	=	=	=											26						1.17	N
1540	2	chr1	78732	78746	no-call	complex	=	?	?											-4						1.17	N
1541	2	chr1	78746	78918	hom	ref	=	=	=											2						1.17	N
1542	2	chr1	78918	78928	no-call	complex	=	?	?											-137						1.17	N
1543	2	chr1	78928	78964	hom	ref	=	=	=											19						1.17	N
1544	2	chr1	78964	78971	no-call	complex	=	?	?											-15						1.17	N
1545	2	chr1	78971	79021	hom	ref	=	=	=											11						1.17	N
1546	2	chr1	79021	79053	no-call	complex	=	?	?											-291						1.17	N
1547	2	chr1	79053	79147	hom	ref	=	=	=											24						1.17	N
1548	2	chr1	79147	79158	no-call	complex	=	?	?											-27						1.17	N
1549	2	chr1	79158	79176	hom	ref	=	=	=											31						1.17	N
1550	2	chr1	79176	79205	no-call	complex	=	?	?											-24						1.17	N
1551	2	chr1	79205	79244	hom	ref	=	=	=											20						1.17	N
1552	2	chr1	79244	79251	no-call	complex	=	?	?											-359						1.17	N
1553	2	chr1	79251	79350	hom	ref	=	=	=											11						1.17	N
1554	2	chr1	79350	79382	no-call	complex	=	?	?											-48						1.17	N
1555	2	chr1	79382	79417	hom	ref	=	=	=											1						1.17	N
1556	2	chr1	79417	79418	half	ref	G	G	N	43	189									1				L1PREC2:L1:19.7	3	1.17	N
1557	2	chr1	79418	79537	hom	ref	=	=	=											-12						1.17	N
1558	2	chr1	79537	79538	half	ref	C	C	N	48	120									-12				L1PREC2:L1:19.7	3	1.17	N
1559	2	chr1	79538	79607	hom	ref	=	=	=											-12						1.17	N
1560	2	chr1	79607	79610	half	ref	GCC	GCC	?	66	0									-13				L1PREC2:L1:19.7	3	1.17	N
1561	2	chr1	79610	79659	hom	ref	=	=	=											-13						1.17	N
1562	2	chr1	79659	79681	no-call	complex	=	?	?											3						1.17	N
1563	2	chr1	79681	79805	hom	ref	=	=	=											2						1.17	N
1564	2	chr1	79805	79806	half	ref	C	C	N	64	288									2				L1PREC2:L1:19.7	3	1.17	N
1565	2	chr1	79806	79849	hom	ref	=	=	=											2						1.17	N
1566	2	chr1	79849	79856	no-call	complex	=	?	?											-29						1.17	N
1567	2	chr1	79856	79893	hom	ref	=	=	=											49						1.17	N
1568	2	chr1	79893	79900	no-call	complex	=	?	?											-343						1.17	N
1569	2	chr1	79900	79997	hom	ref	=	=	=											14						1.17	N
1570	2	chr1	79997	80004	no-call	complex	=	?	?											-4						1.17	N
1571	2	chr1	80004	80137	hom	ref	=	=	=											-18						1.17	N
1572	2	chr1	80137	80144	no-call	complex	=	?	?											-9						1.17	N
1573	2	chr1	80144	80191	hom	ref	=	=	=											-29						1.17	N
1574	2	chr1	80191	80191	half	ref			?	27	0									-29				L1PB:L1:9.0	3	1.17	N
1575	2	chr1	80191	80382	hom	ref	=	=	=											-29						1.17	N
1576	2	chr1	80382	80389	no-call	complex	=	?	?											-3						1.17	N
1577	2	chr1	80389	80515	hom	ref	=	=	=											-3						1.17	N
1578	2	chr1	80515	80561	no-call	complex	=	?	?											-18						1.17	N
1579	2	chr1	80561	80845	hom	ref	=	=	=											17						1.17	N
1580	2	chr1	80845	80852	no-call	complex	=	?	?											-143						1.17	N
1581	2	chr1	80852	80948	hom	ref	=	=	=											24						1.17	N
1582	2	chr1	80948	80977	no-call	complex	=	?	?											-336						1.17	N
1583	2	chr1	80977	81035	hom	ref	=	=	=											6						1.17	N
1584	2	chr1	81035	81036	half	ref	T	T	N	120	120									6				AluSc5:Alu:7.5	3	1.17	N
1585	2	chr1	81036	81096	hom	ref	=	=	=											6						1.17	N
1586	2	chr1	81096	81103	no-call	complex	=	?	?											-16						1.17	N
1587	2	chr1	81103	81200	hom	ref	=	=	=											45						1.17	N
1588	2	chr1	81200	81207	no-call	complex	=	?	?											5						1.17	N
1589	2	chr1	81207	81370	hom	ref	=	=	=											37						1.17	N
1590	2	chr1	81370	81377	no-call	complex	=	?	?											-22						1.17	N
1591	2	chr1	81377	81433	hom	ref	=	=	=											23						1.17	N
1592	2	chr1	81433	81440	no-call	complex	=	?	?											-20						1.17	N
1593	2	chr1	81440	81476	hom	ref	=	=	=											9						1.17	N
1594	2	chr1	81476	81477	half	ref	A	A	?	35	0	689	690							9				Tigger5:TcMar-Tigger:24.7	3	1.17	N
1595	2	chr1	81477	81480	hom	ref	=	=	=											9						1.17	N
1596	2	chr1	81480	81480	half	ref			?	25	0	689	690							12				Tigger5:TcMar-Tigger:24.7	3	1.17	N
1597	2	chr1	81480	81543	hom	ref	=	=	=											12						1.17	N
1598	2	chr1	81543	81550	no-call	complex	=	?	?											-72						1.17	N
1599	2	chr1	81550	81750	hom	ref	=	=	=											-4						1.17	N
1600	2	chr1	81750	81791	no-call	complex	=	?	?											-59						1.17	N
1601	2	chr1	81791	81801	hom	ref	=	=	=											41						1.17	N
1602	2	chr1	81801	81840	no-call	complex	=	?	?											-189						1.17	N
1603	2	chr1	81840	81928	hom	ref	=	=	=											5						1.17	N
1604	2	chr1	81928	81929	half	ref	G	G	?	121	0									5				L1M5:L1:43.5	3	1.17	N
1605	2	chr1	81929	81946	hom	ref	=	=	=											5						1.17	N
1606	2	chr1	81946	81989	no-call	complex	=	?	?											-60						1.17	N
1607	2	chr1	81989	82071	hom	ref	=	=	=											-16						1.17	N
1608	2	chr1	82071	82071	half	ref			?	22	0									-16				L1M5:L1:43.5	3	1.17	N
1609	2	chr1	82071	82110	hom	ref	=	=	=											-16						1.17	N
1610	2	chr1	82110	82111	half	ref	T	T	N	36	89									-4				L1M5:L1:43.5	3	1.17	N
1611	2	chr1	82111	82129	hom	ref	=	=	=											-4						1.17	N
1612	2	chr1	82129	82165	no-call	complex	=	?	?											-5						1.17	N
1613	2	chr1	82165	82245	hom	ref	=	=	=											15						1.17	N
1614	2	chr1	82245	82252	no-call	complex	=	?	?											6						1.17	N
1615	2	chr1	82252	82278	hom	ref	=	=	=											33						1.17	N
1616	2	chr1	82278	82319	no-call	complex	=	?	?											-19						1.17	N
1617	2	chr1	82319	82435	hom	ref	=	=	=											-3						1.17	N
1618	2	chr1	82435	82435	half	ref			?	25	0									-3				L1M4c:L1:45.3	3	1.17	N
1619	2	chr1	82435	82529	hom	ref	=	=	=											-3						1.17	N
1620	2	chr1	82529	82573	no-call	complex	=	?	?											-91						1.17	N
1621	2	chr1	82573	82619	hom	ref	=	=	=											18						1.17	N
1622	2	chr1	82619	82648	no-call	complex	=	?	?											-61						1.17	N
1623	2	chr1	82648	82733	hom	ref	=	=	=											-45						1.17	N
1624	2	chr1	82733	82734	het-ref	snp	T	C	T	42	118	705	706	dbsnp.108:rs4030331	620	18	17	0	35	-45	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC		L1M4c:L1:45.3	3	1.17	N
1625	2	chr1	82734	82739	hom	ref	=	=	=											-45						1.17	N
1626	2	chr1	82739	82739	half	ref			?	118	0	706	705		620					33	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC		L1M4c:L1:45.3	3	1.17	N
1627	2	chr1	82739	82796	hom	ref	=	=	=											14						1.17	N
1628	2	chr1	82796	82803	no-call	complex	=	?	?											-15	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
1629	2	chr1	82803	82831	hom	ref	=	=	=											14						1.17	N
1630	2	chr1	82831	82862	no-call	complex	=	?	?											-52						1.17	N
1631	2	chr1	82862	82880	hom	ref	=	=	=											23						1.17	N
1632	2	chr1	82880	82896	no-call	complex	=	?	?											-45						1.17	N
1633	2	chr1	82896	82947	hom	ref	=	=	=											17						1.17	N
1634	2	chr1	82947	82991	no-call	complex	=	?	?											-41						1.17	N
1635	2	chr1	82991	83051	hom	ref	=	=	=											14						1.17	N
1636	2	chr1	83051	83091	no-call	complex	=	?	?											-100						1.17	N
1637	2	chr1	83091	83107	hom	ref	=	=	=											10						1.17	N
1638	2	chr1	83107	83133	no-call	complex	=	?	?											-35						1.17	N
1639	2	chr1	83133	83204	hom	ref	=	=	=											-1						1.17	N
1640	2	chr1	83204	83209	half	ref	ATGAA	ATGAA	?	42	0	709	710							-1	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC		L1M4c:L1:45.3	3	1.17	N
1641	2	chr1	83209	83220	hom	ref	=	=	=											-1						1.17	N
1642	2	chr1	83220	83221	half	ref	T	T	N	121	121	709	710							8	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC		L1M4c:L1:45.3	3	1.17	N
1643	2	chr1	83221	83256	hom	ref	=	=	=											-24						1.17	N
1644	2	chr1	83256	83256	half	ref			?	36	0									-24	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC		L1M4c:L1:45.3	3	1.17	N
1645	2	chr1	83256	83337	hom	ref	=	=	=											-24						1.17	N
1646	2	chr1	83337	83338	half	ref	T	T	N	27	120	711	712							-6	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC		L1M4c:L1:45.3	3	1.17	N
1647	2	chr1	83338	83340	hom	ref	=	=	=											-6						1.17	N
1648	2	chr1	83340	83341	half	ref	T	T	N	30	120	711	712							20	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC		L1M4c:L1:45.3	3	1.17	N
1649	2	chr1	83341	83378	hom	ref	=	=	=											20						1.17	N
1650	2	chr1	83378	83382	half	ref	AAAA	AAAA	?	22	0									5	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC		L1M4c:L1:45.3	3	1.17	N
1651	2	chr1	83382	83425	hom	ref	=	=	=											5						1.17	N
1652	2	chr1	83425	83427	half	ref	AT	AT	?	121	0									5	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC		L1M4c:L1:45.3	3	1.17	N
1653	2	chr1	83427	83475	hom	ref	=	=	=											2						1.17	N
1654	2	chr1	83475	83479	half	ref	GGCA	GGCA	?	75	0									2	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC		L1M4c:L1:45.3	3	1.17	N
1655	2	chr1	83479	83511	hom	ref	=	=	=											17						1.17	N
1656	2	chr1	83511	83549	no-call	complex	=	?	?											-80						1.17	N
1657	2	chr1	83549	83605	hom	ref	=	=	=											10						1.17	N
1658	2	chr1	83605	83735	no-call	complex	=	?	?											-14						1.17	N
1659	2	chr1	83735	83782	hom	ref	=	=	=											15						1.17	N
1660	2	chr1	83782	84045	no-call	complex	=	?	?											-93						1.17	N
1661	2	chr1	84045	84085	hom	ref	=	=	=											21						1.17	N
1662	2	chr1	84085	84109	no-call	complex	=	?	?											-87						1.17	N
1663	2	chr1	84109	84121	hom	ref	=	=	=											11						1.17	N
1664	2	chr1	84121	84125	half	ref	AACT	AACT	NNCN	22	63	715	716							-6	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC		L1M4c:L1:32.1	3	1.17	N
1665	2	chr1	84125	84146	hom	ref	=	=	=											-6						1.17	N
1666	2	chr1	84146	84147	half	ref	C	C	?	63	0	715	716							8	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC		L1M4c:L1:32.1	3	1.17	N
1667	2	chr1	84147	84209	hom	ref	=	=	=											8						1.17	N
1668	2	chr1	84209	84271	no-call	complex	=	?	?											-56						1.17	N
1669	2	chr1	84271	84302	hom	ref	=	=	=											22						1.17	N
1670	2	chr1	84302	84312	no-call	complex	=	?	?											-12						1.17	N
1671	2	chr1	84312	84383	hom	ref	=	=	=											11						1.17	N
1672	2	chr1	84383	84408	no-call	complex	=	?	?											-83						1.17	N
1673	2	chr1	84408	84434	hom	ref	=	=	=											27						1.17	N
1674	2	chr1	84434	84442	no-call	complex	=	?	?											-31	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
1675	2	chr1	84442	84488	hom	ref	=	=	=											30						1.17	N
1676	2	chr1	84488	84495	no-call	complex	=	?	?											-32	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
1677	2	chr1	84495	84613	hom	ref	=	=	=											8						1.17	N
1678	2	chr1	84613	84647	no-call	complex	=	?	?											-234						1.17	N
1679	2	chr1	84647	84679	hom	ref	=	=	=											14						1.17	N
1680	2	chr1	84679	84707	no-call	complex	=	?	?											-45						1.17	N
1681	2	chr1	84707	84839	hom	ref	=	=	=											11						1.17	N
1682	2	chr1	84839	84847	no-call	complex	=	?	?											-25	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
1683	2	chr1	84847	84903	hom	ref	=	=	=											32						1.17	N
1684	2	chr1	84903	84911	no-call	complex	=	?	?											-4	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
1685	2	chr1	84911	84972	hom	ref	=	=	=											14						1.17	N
1686	2	chr1	84972	85015	no-call	complex	=	?	?											-182						1.17	N
1687	2	chr1	85015	85026	hom	ref	=	=	=											13						1.17	N
1688	2	chr1	85026	85066	no-call	complex	=	?	?											-33						1.17	N
1689	2	chr1	85066	85146	hom	ref	=	=	=											2						1.17	N
1690	2	chr1	85146	85153	no-call	complex	=	?	?											-74	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
1691	2	chr1	85153	85196	hom	ref	=	=	=											35						1.17	N
1692	2	chr1	85196	85203	no-call	complex	=	?	?											-101	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
1693	2	chr1	85203	85261	hom	ref	=	=	=											19						1.17	N
1694	2	chr1	85261	85301	no-call	complex	=	?	?											-43						1.17	N
1695	2	chr1	85301	85360	hom	ref	=	=	=											-18						1.17	N
1696	2	chr1	85360	85361	half	ref	G	G	N	52	120									-18	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC		L1M4c:L1:32.1	4	1.17	N
1697	2	chr1	85361	85402	hom	ref	=	=	=											-18						1.17	N
1698	2	chr1	85402	85423	no-call	complex	=	?	?											-51						1.17	N
1699	2	chr1	85423	85576	hom	ref	=	=	=											-26						1.17	N
1700	2	chr1	85576	85577	half	ref	G	G	N	56	143									-26	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC		L1M4c:L1:32.1	4	1.17	N
1701	2	chr1	85577	85634	hom	ref	=	=	=											-26						1.17	N
1702	2	chr1	85634	85663	no-call	complex	=	?	?											-25						1.17	N
1703	2	chr1	85663	85721	hom	ref	=	=	=											10						1.17	N
1704	2	chr1	85721	85766	no-call	complex	=	?	?											-40						1.17	N
1705	2	chr1	85766	85787	hom	ref	=	=	=											26						1.17	N
1706	2	chr1	85787	85816	no-call	complex	=	?	?											-91						1.17	N
1707	2	chr1	85816	85872	hom	ref	=	=	=											32						1.17	N
1708	2	chr1	85872	85910	no-call	complex	=	?	?											-73						1.17	N
1709	2	chr1	85910	85933	hom	ref	=	=	=											12						1.17	N
1710	2	chr1	85933	85945	no-call	complex	=	?	?											-1						1.17	N
1711	2	chr1	85945	86007	hom	ref	=	=	=											12						1.17	N
1712	2	chr1	86007	86022	half	ref	CTGAAAACATCTATT	CTGAAAACATCTATT	?	22	0									-2	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC			4	1.17	N
1713	2	chr1	86022	86050	hom	ref	=	=	=											14						1.17	N
1714	2	chr1	86050	86078	no-call	complex	=	?	?											-13						1.17	N
1715	2	chr1	86078	86110	hom	ref	=	=	=											-7						1.17	N
1716	2	chr1	86110	86110	half	ref			?	22	0	737	738							-7	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC		L1MC5:L1:45.3	4	1.17	N
1717	2	chr1	86110	86113	hom	ref	=	=	=											-7						1.17	N
1718	2	chr1	86113	86118	half	ref	TTAAT	TTAAT	?	29	0	737	738							-5	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC		L1MC5:L1:45.3	4	1.17	N
1719	2	chr1	86118	86132	hom	ref	=	=	=											7						1.17	N
1720	2	chr1	86132	86133	half	ref	A	A	N	20	46	737	738							7	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC		L1MC5:L1:45.3	4	1.17	N
1721	2	chr1	86133	86163	hom	ref	=	=	=											7						1.17	N
1722	2	chr1	86163	86170	no-call	complex	=	?	?											-173	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
1723	2	chr1	86170	86218	hom	ref	=	=	=											13						1.17	N
1724	2	chr1	86218	86219	half	ref	A	A	N	21	98									-5	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC		L1MC5:L1:45.3	4	1.17	N
1725	2	chr1	86219	86266	hom	ref	=	=	=											-5						1.17	N
1726	2	chr1	86266	86269	half	ref	AAT	AAT	NNN	38	21	739	740							6	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC		L1MC5:L1:45.3	4	1.17	N
1727	2	chr1	86269	86272	hom	ref	=	=	=											14						1.17	N
1728	2	chr1	86272	86272	half	ref			?	22	0	739	740							29	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC		L1MC5:L1:45.3	4	1.17	N
1729	2	chr1	86272	86281	hom	ref	=	=	=											22						1.17	N
1730	2	chr1	86281	86287	half	ref	TAATTT	TAATTT	NANNNN	24	74	739	740							2	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC		L1MC5:L1:45.3	4	1.17	N
1731	2	chr1	86287	86298	hom	ref	=	=	=											-8						1.17	N
1732	2	chr1	86298	86306	half	ref	TTTAGTTC	TTTAGTTC	NTNNNNNN	21	74	739	740							-4	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC		L1MC5:L1:45.3	4	1.17	N
1733	2	chr1	86306	86345	hom	ref	=	=	=											13						1.17	N
1734	2	chr1	86345	86426	no-call	complex	=	?	?											-50						1.17	N
1735	2	chr1	86426	86467	hom	ref	=	=	=											11						1.17	N
1736	2	chr1	86467	86490	no-call	complex	=	?	?											-24						1.17	N
1737	2	chr1	86490	86535	hom	ref	=	=	=											11						1.17	N
1738	2	chr1	86535	86538	half	ref	TAT	TAT	?	51	0									8	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC		L1MC5:L1:45.3	4	1.17	N
1739	2	chr1	86538	86630	hom	ref	=	=	=											8						1.17	N
1740	2	chr1	86630	86697	no-call	complex	=	?	?											-5						1.17	N
1741	2	chr1	86697	86703	hom	ref	=	=	=											25						1.17	N
1742	2	chr1	86703	86713	no-call	complex	=	?	?											18						1.17	N
1743	2	chr1	86713	86760	hom	ref	=	=	=											6						1.17	N
1744	2	chr1	86760	86762	half	ref	AT	AT	?	72	0				649					3	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC			4	1.17	N
1745	2	chr1	86762	86787	hom	ref	=	=	=											-392						1.17	N
1746	2	chr1	86787	86788	no-call	complex	G	?	?	0	0				649					-392	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC			4	1.17	N
1747	2	chr1	86788	86833	hom	ref	=	=	=											-392						1.17	N
1748	2	chr1	86833	86833	half	ref			?	33	0									-28	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC		L1MC5:L1:37.7	4	1.17	N
1749	2	chr1	86833	86907	hom	ref	=	=	=											-28						1.17	N
1750	2	chr1	86907	86912	half	ref	ATTTG	ATTTG	?	95	0									-11	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC		L1MC5:L1:37.7	4	1.17	N
1751	2	chr1	86912	87038	hom	ref	=	=	=											-53						1.17	N
1752	2	chr1	87038	87038	half	ref			?	28	0									-53	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC		L1MC5:L1:37.7	4	1.17	N
1753	2	chr1	87038	87371	hom	ref	=	=	=											-53						1.17	N
1754	2	chr1	87371	87372	half	ref	T	T	N	33	115									7	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::TSS-UPSTREAM:UNKNOWN-INC		AluJo:Alu:16.3	3	1.17	N
1755	2	chr1	87372	87544	hom	ref	=	=	=											7						1.17	N
1756	2	chr1	87544	87566	no-call	complex	=	?	?											-39						1.17	N
1757	2	chr1	87566	87682	hom	ref	=	=	=											24						1.17	N
1758	2	chr1	87682	87685	half	ref	TTC	TTC	NTN	127	34	745	746							24	100132632:XM_001724183.2:LOC100132632::::UTR5:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::UTR5:UNKNOWN-INC			3	1.17	N
1759	2	chr1	87685	87701	hom	ref	=	=	=											-10						1.17	N
1760	2	chr1	87701	87702	half	ref	G	G	N	44	127	745	746							-10	100132632:XM_001724183.2:LOC100132632::::UTR5:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::UTR5:UNKNOWN-INC			3	1.17	N
1761	2	chr1	87702	87725	hom	ref	=	=	=											-10						1.17	N
1762	2	chr1	87725	87725	half	ref			?	25	0	745	746							-4	100132632:XM_001724183.2:LOC100132632::::UTR5:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::UTR5:UNKNOWN-INC			3	1.17	N
1763	2	chr1	87725	87751	hom	ref	=	=	=											-4						1.17	N
1764	2	chr1	87751	87758	no-call	complex	=	?	?											-197	100132632:XM_001724183.2:LOC100132632::::UTR5:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::UTR5:UNKNOWN-INC				1.17	N
1765	2	chr1	87758	87792	hom	ref	=	=	=											27						1.17	N
1766	2	chr1	87792	87841	no-call	complex	=	?	?											-43						1.17	N
1767	2	chr1	87841	88165	hom	ref	=	=	=											18						1.17	N
1768	2	chr1	88165	88175	no-call	complex	=	?	?											37						1.17	N
1769	2	chr1	88175	88212	hom	ref	=	=	=											22						1.17	N
1770	2	chr1	88212	88245	no-call	complex	=	?	?											-422						1.17	N
1771	2	chr1	88245	88274	hom	ref	=	=	=											27						1.17	N
1772	2	chr1	88274	88298	no-call	complex	=	?	?											-81						1.17	N
1773	2	chr1	88298	88328	hom	ref	=	=	=											21						1.17	N
1774	2	chr1	88328	88335	no-call	complex	=	?	?											-10	100132632:XM_001724183.2:LOC100132632::::CDS:UNKNOWN-VNC	100132632:XM_001724183.2:LOC100132632::::CDS:UNKNOWN-VNC				1.17	N
1775	2	chr1	88335	88383	hom	ref	=	=	=											48						1.17	N
1776	2	chr1	88383	88390	no-call	complex	=	?	?											-66	100132632:XM_001724183.2:LOC100132632::::CDS:UNKNOWN-VNC	100132632:XM_001724183.2:LOC100132632::::CDS:UNKNOWN-VNC				1.17	N
1777	2	chr1	88390	88459	hom	ref	=	=	=											29						1.17	N
1778	2	chr1	88459	88466	no-call	complex	=	?	?											-84	100132632:XM_001724183.2:LOC100132632::::CDS:UNKNOWN-VNC	100132632:XM_001724183.2:LOC100132632::::CDS:UNKNOWN-VNC				1.17	N
1779	2	chr1	88466	88568	hom	ref	=	=	=											13						1.17	N
1780	2	chr1	88568	88576	no-call	complex	=	?	?											-334	100132632:XM_001724183.2:LOC100132632::::CDS:UNKNOWN-VNC	100132632:XM_001724183.2:LOC100132632::::CDS:UNKNOWN-VNC				1.17	N
1781	2	chr1	88576	88667	hom	ref	=	=	=											25						1.17	N
1782	2	chr1	88667	88709	no-call	complex	=	?	?											-10						1.17	N
1783	2	chr1	88709	88781	hom	ref	=	=	=											-40						1.17	N
1784	2	chr1	88781	88815	no-call	complex	=	?	?											-111						1.17	N
1785	2	chr1	88815	88905	hom	ref	=	=	=											12						1.17	N
1786	2	chr1	88905	88932	no-call	complex	=	?	?											-172						1.17	N
1787	2	chr1	88932	89148	hom	ref	=	=	=											8						1.17	N
1788	2	chr1	89148	89149	half	ref	A	A	N	39	122									8	100132632:XM_001724183.2:LOC100132632::::UTR3:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::UTR3:UNKNOWN-INC		L2a:L2:26.5	7	1.17	N
1789	2	chr1	89149	89243	hom	ref	=	=	=											-52						1.17	N
1790	2	chr1	89243	89243	half	ref			?	46	0									-52	100132632:XM_001724183.2:LOC100132632::::UTR3:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::UTR3:UNKNOWN-INC			7	1.17	N
1791	2	chr1	89243	89279	hom	ref	=	=	=											-52						1.17	N
1792	2	chr1	89279	89286	no-call	complex	=	?	?											-246	100132632:XM_001724183.2:LOC100132632::::UTR3:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::UTR3:UNKNOWN-INC				1.17	N
1793	2	chr1	89286	89414	hom	ref	=	=	=											-32						1.17	N
1794	2	chr1	89414	89415	half	ref	C	C	N	71	120									-32	100132632:XM_001724183.2:LOC100132632::::UTR3:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::UTR3:UNKNOWN-INC			7	1.17	N
1795	2	chr1	89415	89484	hom	ref	=	=	=											-32						1.17	N
1796	2	chr1	89484	89522	no-call	complex	=	?	?											-140						1.17	N
1797	2	chr1	89522	89627	hom	ref	=	=	=											-14						1.17	N
1798	2	chr1	89627	89642	no-call	complex	=	?	?											-26						1.17	N
1799	2	chr1	89642	89714	hom	ref	=	=	=											21						1.17	N
1800	2	chr1	89714	89728	no-call	complex	=	?	?											-104						1.17	N
1801	2	chr1	89728	89803	hom	ref	=	=	=											25						1.17	N
1802	2	chr1	89803	89816	no-call	complex	=	?	?											-50						1.17	N
1803	2	chr1	89816	89833	hom	ref	=	=	=											25						1.17	N
1804	2	chr1	89833	89865	no-call	complex	=	?	?											-52						1.17	N
1805	2	chr1	89865	89876	hom	ref	=	=	=											-12						1.17	N
1806	2	chr1	89876	89884	no-call	complex	GAGGAGAT	GAGGNGAT	NANGNGAN	24	31	765	766							-12	100132632:XM_001724183.2:LOC100132632::::UTR3:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::UTR3:UNKNOWN-INC		MLT1H2:ERVL-MaLR:36.8	7	1.17	N
1807	2	chr1	89884	89887	hom	ref	=	=	=											6						1.17	N
1808	2	chr1	89887	89888	half	ref	C	C	N	24	121	765	766							6	100132632:XM_001724183.2:LOC100132632::::UTR3:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::UTR3:UNKNOWN-INC		MLT1H2:ERVL-MaLR:36.8	7	1.17	N
1809	2	chr1	89888	89918	hom	ref	=	=	=											6						1.17	N
1810	2	chr1	89918	89926	no-call	complex	=	?	?											-31	100132632:XM_001724183.2:LOC100132632::::UTR3:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::UTR3:UNKNOWN-INC				1.17	N
1811	2	chr1	89926	89971	hom	ref	=	=	=											11						1.17	N
1812	2	chr1	89971	89992	no-call	complex	=	?	?											-43						1.17	N
1813	2	chr1	89992	90010	hom	ref	=	=	=											26						1.17	N
1814	2	chr1	90010	90019	no-call	complex	=	?	?											-3	100132632:XM_001724183.2:LOC100132632::::UTR3:UNKNOWN-INC	100132632:XM_001724183.2:LOC100132632::::UTR3:UNKNOWN-INC				1.17	N
1815	2	chr1	90019	90058	hom	ref	=	=	=											11						1.17	N
1816	2	chr1	90058	90416	no-call	complex	=	?	?											-322						1.17	N
1817	2	chr1	90416	90433	hom	ref	=	=	=											18						1.17	N
1818	2	chr1	90433	90468	no-call	complex	=	?	?											-60						1.17	N
1819	2	chr1	90468	90496	hom	ref	=	=	=											14						1.17	N
1820	2	chr1	90496	90544	no-call	complex	=	?	?											-94						1.17	N
1821	2	chr1	90544	90593	hom	ref	=	=	=											1						1.17	N
1822	2	chr1	90593	90594	half	ref	T	T	N	22	120									1					7	1.17	N
1823	2	chr1	90594	90637	hom	ref	=	=	=											-2						1.17	N
1824	2	chr1	90637	90644	no-call	complex	=	?	?											-1						1.17	N
1825	2	chr1	90644	90706	hom	ref	=	=	=											10						1.17	N
1826	2	chr1	90706	90719	no-call	complex	=	?	?											-19						1.17	N
1827	2	chr1	90719	90746	hom	ref	=	=	=											14						1.17	N
1828	2	chr1	90746	90784	no-call	complex	=	?	?											-25						1.17	N
1829	2	chr1	90784	90818	hom	ref	=	=	=											12						1.17	N
1830	2	chr1	90818	90859	no-call	complex	=	?	?											-1						1.17	N
1831	2	chr1	90859	90894	hom	ref	=	=	=											-26						1.17	N
1832	2	chr1	90894	90895	half	ref	C	C	N	115	120									-26					7	1.17	N
1833	2	chr1	90895	90970	hom	ref	=	=	=											-26						1.17	N
1834	2	chr1	90970	91010	no-call	complex	=	?	?											-47						1.17	N
1835	2	chr1	91010	91060	hom	ref	=	=	=											17						1.17	N
1836	2	chr1	91060	91067	no-call	complex	=	?	?											-34						1.17	N
1837	2	chr1	91067	91091	hom	ref	=	=	=											18						1.17	N
1838	2	chr1	91091	91111	no-call	complex	=	?	?											-57						1.17	N
1839	2	chr1	91111	91140	hom	ref	=	=	=											8						1.17	N
1840	2	chr1	91140	91141	half	ref	G	G	N	122	122									8				AluY:Alu:9.9	7	1.17	N
1841	2	chr1	91141	91171	hom	ref	=	=	=											8						1.17	N
1842	2	chr1	91171	91217	no-call	complex	=	?	?											-54						1.17	N
1843	2	chr1	91217	91332	hom	ref	=	=	=											24						1.17	N
1844	2	chr1	91332	91339	no-call	complex	=	?	?											-62						1.17	N
1845	2	chr1	91339	91415	hom	ref	=	=	=											16						1.17	N
1846	2	chr1	91415	91431	no-call	complex	=	?	?											-58						1.17	N
1847	2	chr1	91431	91461	hom	ref	=	=	=											11						1.17	N
1848	2	chr1	91461	91493	no-call	complex	=	?	?											-23						1.17	N
1849	2	chr1	91493	91511	hom	ref	=	=	=											19						1.17	N
1850	2	chr1	91511	91539	no-call	complex	=	?	?											-29						1.17	N
1851	2	chr1	91539	91571	hom	ref	=	=	=											14						1.17	N
1852	2	chr1	91571	91584	no-call	complex	=	?	?											-49						1.17	N
1853	2	chr1	91584	91612	hom	ref	=	=	=											16						1.17	N
1854	2	chr1	91612	91646	no-call	complex	=	?	?											-77						1.17	N
1855	2	chr1	91646	91659	hom	ref	=	=	=											31						1.17	N
1856	2	chr1	91659	91688	no-call	complex	=	?	?											-16						1.17	N
1857	2	chr1	91688	91841	hom	ref	=	=	=											2						1.17	N
1858	2	chr1	91841	91842	half	ref	C	C	N	60	123									2				MER4A:ERV1:31.2	9	1.17	N
1859	2	chr1	91842	91936	hom	ref	=	=	=											2						1.17	N
1860	2	chr1	91936	91964	no-call	complex	=	?	?											-13						1.17	N
1861	2	chr1	91964	91981	hom	ref	=	=	=											12						1.17	N
1862	2	chr1	91981	91995	no-call	complex	=	?	?											-13						1.17	N
1863	2	chr1	91995	92111	hom	ref	=	=	=											16						1.17	N
1864	2	chr1	92111	92118	no-call	complex	=	?	?											-98						1.17	N
1865	2	chr1	92118	92226	hom	ref	=	=	=											8						1.17	N
1866	2	chr1	92226	92260	no-call	complex	=	?	?											-145						1.17	N
1867	2	chr1	92260	92477	hom	ref	=	=	=											-3						1.17	N
1868	2	chr1	92477	92484	no-call	complex	=	?	?											-83						1.17	N
1869	2	chr1	92484	92634	hom	ref	=	=	=											10						1.17	N
1870	2	chr1	92634	92692	no-call	complex	=	?	?											-23						1.17	N
1871	2	chr1	92692	92790	hom	ref	=	=	=											26						1.17	N
1872	2	chr1	92790	92797	no-call	complex	=	?	?											-60						1.17	N
1873	2	chr1	92797	92866	hom	ref	=	=	=											16						1.17	N
1874	2	chr1	92866	92873	no-call	complex	=	?	?											-44						1.17	N
1875	2	chr1	92873	92908	hom	ref	=	=	=											10						1.17	N
1876	2	chr1	92908	92915	no-call	complex	=	?	?											-100						1.17	N
1877	2	chr1	92915	93010	hom	ref	=	=	=											-9						1.17	N
1878	2	chr1	93010	93011	half	ref	G	G	N	94	120									6					14	1.17	N
1879	2	chr1	93011	93178	hom	ref	=	=	=											-25						1.17	N
1880	2	chr1	93178	93210	no-call	complex	=	?	?											-233						1.17	N
1881	2	chr1	93210	93275	hom	ref	=	=	=											11						1.17	N
1882	2	chr1	93275	93309	no-call	complex	=	?	?											-42						1.17	N
1883	2	chr1	93309	93568	hom	ref	=	=	=											-24						1.17	N
1884	2	chr1	93568	93608	no-call	complex	=	?	?											-67						1.17	N
1885	2	chr1	93608	93872	hom	ref	=	=	=											-19						1.17	N
1886	2	chr1	93872	93874	half	ref	AT	AT	NN	83	120									17				AluSc:Alu:14.5	14	1.17	N
1887	2	chr1	93874	93904	hom	ref	=	=	=											17						1.17	N
1888	2	chr1	93904	93917	no-call	complex	=	?	?											-61						1.17	N
1889	2	chr1	93917	93982	hom	ref	=	=	=											20						1.17	N
1890	2	chr1	93982	94022	no-call	complex	=	?	?											-5						1.17	N
1891	2	chr1	94022	94060	hom	ref	=	=	=											-24						1.17	N
1892	2	chr1	94060	94061	half	ref	C	C	N	52	120									-24					14	1.17	N
1893	2	chr1	94061	94117	hom	ref	=	=	=											-24						1.17	N
1894	2	chr1	94117	94129	no-call	complex	=	?	?											-13						1.17	N
1895	2	chr1	94129	94238	hom	ref	=	=	=											7						1.17	N
1896	2	chr1	94238	94276	no-call	complex	=	?	?											-129						1.17	N
1897	2	chr1	94276	94366	hom	ref	=	=	=											-2						1.17	N
1898	2	chr1	94366	94373	no-call	complex	=	?	?											-5						1.17	N
1899	2	chr1	94373	94402	hom	ref	=	=	=											22						1.17	N
1900	2	chr1	94402	94438	no-call	complex	=	?	?											-163						1.17	N
1901	2	chr1	94438	94456	hom	ref	=	=	=											13						1.17	N
1902	2	chr1	94456	94494	no-call	complex	=	?	?											-38						1.17	N
1903	2	chr1	94494	94521	hom	ref	=	=	=											10						1.17	N
1904	2	chr1	94521	94550	no-call	complex	=	?	?											-88						1.17	N
1905	2	chr1	94550	94556	hom	ref	=	=	=											12						1.17	N
1906	2	chr1	94556	94573	no-call	complex	=	?	?											-71						1.17	N
1907	2	chr1	94573	94648	hom	ref	=	=	=											-8						1.17	N
1908	2	chr1	94648	94649	half	ref	T	T	N	123	123									-8				MLT1H:ERVL-MaLR:43.2	14	1.17	N
1909	2	chr1	94649	94694	hom	ref	=	=	=											-8						1.17	N
1910	2	chr1	94694	94728	no-call	complex	=	?	?											-81						1.17	N
1911	2	chr1	94728	94804	hom	ref	=	=	=											11						1.17	N
1912	2	chr1	94804	94852	no-call	complex	=	?	?											-69						1.17	N
1913	2	chr1	94852	94857	hom	ref	=	=	=											10						1.17	N
1914	2	chr1	94857	94874	no-call	complex	=	?	?											-98						1.17	N
1915	2	chr1	94874	94885	hom	ref	=	=	=											14						1.17	N
1916	2	chr1	94885	94922	no-call	complex	=	?	?											-59						1.17	N
1917	2	chr1	94922	94974	hom	ref	=	=	=											11						1.17	N
1918	2	chr1	94974	95024	no-call	complex	=	?	?											-50						1.17	N
1919	2	chr1	95024	95088	hom	ref	=	=	=											23						1.17	N
1920	2	chr1	95088	95095	no-call	complex	=	?	?											-39						1.17	N
1921	2	chr1	95095	95188	hom	ref	=	=	=											12						1.17	N
1922	2	chr1	95188	95195	no-call	complex	=	?	?											-61						1.17	N
1923	2	chr1	95195	95595	hom	ref	=	=	=											-14						1.17	N
1924	2	chr1	95595	95625	no-call	complex	=	?	?											-32						1.17	N
1925	2	chr1	95625	95697	hom	ref	=	=	=											-23						1.17	N
1926	2	chr1	95697	95698	half	ref	C	C	N	67	120									8					14	1.17	N
1927	2	chr1	95698	95929	hom	ref	=	=	=											-19						1.17	N
1928	2	chr1	95929	95936	no-call	complex	=	?	?											-152						1.17	N
1929	2	chr1	95936	95967	hom	ref	=	=	=											18						1.17	N
1930	2	chr1	95967	96003	no-call	complex	=	?	?											-67						1.17	N
1931	2	chr1	96003	96144	hom	ref	=	=	=											-28						1.17	N
1932	2	chr1	96144	96147	half	ref	TCT	TCT	NNN	30	114									4					14	1.17	N
1933	2	chr1	96147	96166	hom	ref	=	=	=											4						1.17	N
1934	2	chr1	96166	96213	no-call	complex	=	?	?											-62						1.17	N
1935	2	chr1	96213	96228	hom	ref	=	=	=											22						1.17	N
1936	2	chr1	96228	96270	no-call	complex	=	?	?											-77						1.17	N
1937	2	chr1	96270	96371	hom	ref	=	=	=											20						1.17	N
1938	2	chr1	96371	96408	no-call	complex	=	?	?											-157						1.17	N
1939	2	chr1	96408	96462	hom	ref	=	=	=											15						1.17	N
1940	2	chr1	96462	96469	no-call	complex	=	?	?											-3						1.17	N
1941	2	chr1	96469	96584	hom	ref	=	=	=											12						1.17	N
1942	2	chr1	96584	96620	no-call	complex	=	?	?											-87						1.17	N
1943	2	chr1	96620	96735	hom	ref	=	=	=											-14						1.17	N
1944	2	chr1	96735	96742	no-call	complex	=	?	?											-10						1.17	N
1945	2	chr1	96742	96814	hom	ref	=	=	=											13						1.17	N
1946	2	chr1	96814	96836	no-call	complex	=	?	?											-132						1.17	N
1947	2	chr1	96836	97017	hom	ref	=	=	=											-52						1.17	N
1948	2	chr1	97017	97064	no-call	complex	=	?	?											-55						1.17	N
1949	2	chr1	97064	97081	hom	ref	=	=	=											22						1.17	N
1950	2	chr1	97081	97093	no-call	complex	=	?	?											-47						1.17	N
1951	2	chr1	97093	97168	hom	ref	=	=	=											-44						1.17	N
1952	2	chr1	97168	97169	half	ref	G	G	N	121	121									-44					14	1.17	N
1953	2	chr1	97169	97320	hom	ref	=	=	=											-44						1.17	N
1954	2	chr1	97320	97368	no-call	complex	=	?	?											-15						1.17	N
1955	2	chr1	97368	97392	hom	ref	=	=	=											14						1.17	N
1956	2	chr1	97392	97434	no-call	complex	=	?	?											-15						1.17	N
1957	2	chr1	97434	97464	hom	ref	=	=	=											14						1.17	N
1958	2	chr1	97464	97471	no-call	complex	=	?	?											-65						1.17	N
1959	2	chr1	97471	97542	hom	ref	=	=	=											19						1.17	N
1960	2	chr1	97542	97570	no-call	complex	=	?	?											-58						1.17	N
1961	2	chr1	97570	97820	hom	ref	=	=	=											-45						1.17	N
1962	2	chr1	97820	97821	half	ref	C	C	N	86	121									-4				MLT1I:ERVL-MaLR:56.8	14	1.17	N
1963	2	chr1	97821	97866	hom	ref	=	=	=											-4						1.17	N
1964	2	chr1	97866	97900	no-call	complex	=	?	?											-151						1.17	N
1965	2	chr1	97900	97949	hom	ref	=	=	=											31						1.17	N
1966	2	chr1	97949	97956	no-call	complex	=	?	?											-37						1.17	N
1967	2	chr1	97956	97987	hom	ref	=	=	=											33						1.17	N
1968	2	chr1	97987	98026	no-call	complex	=	?	?											-19						1.17	N
1969	2	chr1	98026	98219	hom	ref	=	=	=											-13						1.17	N
1970	2	chr1	98219	98248	no-call	complex	=	?	?											-99						1.17	N
1971	2	chr1	98248	98353	hom	ref	=	=	=											10						1.17	N
1972	2	chr1	98353	98407	no-call	complex	=	?	?											-59						1.17	N
1973	2	chr1	98407	98453	hom	ref	=	=	=											3						1.17	N
1974	2	chr1	98453	98460	no-call	complex	=	?	?											-20						1.17	N
1975	2	chr1	98460	98477	hom	ref	=	=	=											21						1.17	N
1976	2	chr1	98477	98517	no-call	complex	=	?	?											-25						1.17	N
1977	2	chr1	98517	98582	hom	ref	=	=	=											11						1.17	N
1978	2	chr1	98582	98601	no-call	complex	=	?	?											-47						1.17	N
1979	2	chr1	98601	98614	hom	ref	=	=	=											10						1.17	N
1980	2	chr1	98614	98641	no-call	complex	=	?	?											-138						1.17	N
1981	2	chr1	98641	98655	hom	ref	=	=	=											-1						1.17	N
1982	2	chr1	98655	98656	half	ref	T	T	N	121	121									-1					14	1.17	N
1983	2	chr1	98656	98676	hom	ref	=	=	=											-1						1.17	N
1984	2	chr1	98676	98709	no-call	complex	=	?	?											-108						1.17	N
1985	2	chr1	98709	98797	hom	ref	=	=	=											8						1.17	N
1986	2	chr1	98797	98808	no-call	complex	=	?	?											-262						1.17	N
1987	2	chr1	98808	98863	hom	ref	=	=	=											12						1.17	N
1988	2	chr1	98863	98910	no-call	complex	=	?	?											-103						1.17	N
1989	2	chr1	98910	98922	hom	ref	=	=	=											11						1.17	N
1990	2	chr1	98922	98950	no-call	complex	=	?	?											-45						1.17	N
1991	2	chr1	98950	98989	hom	ref	=	=	=											10						1.17	N
1992	2	chr1	98989	99058	no-call	complex	=	?	?											-279						1.17	N
1993	2	chr1	99058	99068	hom	ref	=	=	=											10						1.17	N
1994	2	chr1	99068	99120	no-call	complex	=	?	?											-202						1.17	N
1995	2	chr1	99120	99306	hom	ref	=	=	=											-7						1.17	N
1996	2	chr1	99306	99329	no-call	complex	=	?	?											-90						1.17	N
1997	2	chr1	99329	99343	hom	ref	=	=	=											13						1.17	N
1998	2	chr1	99343	99346	half	ref	CAC	CAC	NAN	25	107	829	830							2				AluSg4:Alu:12.0	14	1.17	N
1999	2	chr1	99346	99357	hom	ref	=	=	=											2						1.17	N
2000	2	chr1	99357	99358	half	ref	A	A	N	20	107	829	830							14				AluSg4:Alu:12.0	14	1.17	N
2001	2	chr1	99358	99361	hom	ref	=	=	=											5						1.17	N
2002	2	chr1	99361	99362	half	ref	T	T	N	23	107	829	830							5				AluSg4:Alu:12.0	14	1.17	N
2003	2	chr1	99362	99373	hom	ref	=	=	=											5						1.17	N
2004	2	chr1	99373	99376	half	ref	AGG	AGG	NNN	22	107	829	830							7				AluSg4:Alu:12.0	14	1.17	N
2005	2	chr1	99376	99382	hom	ref	=	=	=											-7						1.17	N
2006	2	chr1	99382	99383	half	ref	C	C	N	34	107	829	830							-7				AluSg4:Alu:12.0	14	1.17	N
2007	2	chr1	99383	99539	hom	ref	=	=	=											-7						1.17	N
2008	2	chr1	99539	99570	no-call	complex	=	?	?											-40						1.17	N
2009	2	chr1	99570	99597	hom	ref	=	=	=											20						1.17	N
2010	2	chr1	99597	99638	no-call	complex	=	?	?											-69						1.17	N
2011	2	chr1	99638	99706	hom	ref	=	=	=											5						1.17	N
2012	2	chr1	99706	99761	no-call	complex	=	?	?											-127						1.17	N
2013	2	chr1	99761	99766	hom	ref	=	=	=											34						1.17	N
2014	2	chr1	99766	99797	no-call	complex	=	?	?											-255						1.17	N
2015	2	chr1	99797	99828	hom	ref	=	=	=											18						1.17	N
2016	2	chr1	99828	99878	no-call	complex	=	?	?											-96						1.17	N
2017	2	chr1	99878	99908	hom	ref	=	=	=											25						1.17	N
2018	2	chr1	99908	99921	no-call	complex	=	?	?											-4						1.17	N
2019	2	chr1	99921	100098	hom	ref	=	=	=											14						1.17	N
2020	2	chr1	100098	100118	no-call	complex	=	?	?											-41						1.17	N
2021	2	chr1	100118	100242	hom	ref	=	=	=											-14						1.17	N
2022	2	chr1	100242	100272	no-call	complex	=	?	?											-8						1.17	N
2023	2	chr1	100272	100328	hom	ref	=	=	=											11						1.17	N
2024	2	chr1	100328	100353	no-call	complex	=	?	?											-41						1.17	N
2025	2	chr1	100353	100487	hom	ref	=	=	=											23						1.17	N
2026	2	chr1	100487	100504	no-call	complex	=	?	?											-259						1.17	N
2027	2	chr1	100504	100642	hom	ref	=	=	=											7						1.17	N
2028	2	chr1	100642	100684	no-call	complex	=	?	?											-48						1.17	N
2029	2	chr1	100684	100854	hom	ref	=	=	=											6						1.17	N
2030	2	chr1	100854	100879	no-call	complex	=	?	?											-140						1.17	N
2031	2	chr1	100879	100894	hom	ref	=	=	=											-15						1.17	N
2032	2	chr1	100894	100895	half	ref	A	A	N	120	120									-15					14	1.17	N
2033	2	chr1	100895	100980	hom	ref	=	=	=											-24						1.17	N
2034	2	chr1	100980	100981	half	ref	A	A	N	41	104									-24					14	1.17	N
2035	2	chr1	100981	101026	hom	ref	=	=	=											-24						1.17	N
2036	2	chr1	101026	101074	no-call	complex	=	?	?											-23						1.17	N
2037	2	chr1	101074	101098	hom	ref	=	=	=											1						1.17	N
2038	2	chr1	101098	101098	half	ref			?	32	0	843	844							1				AluSz:Alu:13.5	14	1.17	N
2039	2	chr1	101098	101100	hom	ref	=	=	=											1						1.17	N
2040	2	chr1	101100	101101	half	ref	G	G	N	75	120	843	844							25				AluSz:Alu:13.5	14	1.17	N
2041	2	chr1	101101	101110	hom	ref	=	=	=											-10						1.17	N
2042	2	chr1	101110	101111	half	ref	G	G	N	71	120									-10				AluSz:Alu:13.5	14	1.17	N
2043	2	chr1	101111	101152	hom	ref	=	=	=											-10						1.17	N
2044	2	chr1	101152	101184	no-call	complex	=	?	?											-62						1.17	N
2045	2	chr1	101184	101221	hom	ref	=	=	=											11						1.17	N
2046	2	chr1	101221	101249	no-call	complex	=	?	?											-41						1.17	N
2047	2	chr1	101249	101264	hom	ref	=	=	=											21						1.17	N
2048	2	chr1	101264	101294	no-call	complex	=	?	?											-40						1.17	N
2049	2	chr1	101294	101331	hom	ref	=	=	=											2						1.17	N
2050	2	chr1	101331	101370	no-call	complex	=	?	?											-21						1.17	N
2051	2	chr1	101370	101398	hom	ref	=	=	=											-13						1.17	N
2052	2	chr1	101398	101398	half	ref			?	22	0	847	848							-12					14	1.17	N
2053	2	chr1	101398	101401	hom	ref	=	=	=											-12						1.17	N
2054	2	chr1	101401	101402	half	ref	T	T	N	103	103	847	848							-4					14	1.17	N
2055	2	chr1	101402	101490	hom	ref	=	=	=											-4						1.17	N
2056	2	chr1	101490	101531	no-call	complex	=	?	?											-49						1.17	N
2057	2	chr1	101531	101544	hom	ref	=	=	=											25						1.17	N
2058	2	chr1	101544	101574	no-call	complex	=	?	?											-108						1.17	N
2059	2	chr1	101574	101610	hom	ref	=	=	=											6						1.17	N
2060	2	chr1	101610	101611	half	ref	G	G	?	122	0	851	852							6				AluJr:Alu:23.7	14	1.17	N
2061	2	chr1	101611	101619	hom	ref	=	=	=											6						1.17	N
2062	2	chr1	101619	101620	half	ref	A	A	N	122	122	851	852							3				AluJr:Alu:23.7	14	1.17	N
2063	2	chr1	101620	101626	hom	ref	=	=	=											3						1.17	N
2064	2	chr1	101626	101630	half	ref	ATCA	ATCA	?	122	0	851	852							23				AluJr:Alu:23.7	14	1.17	N
2065	2	chr1	101630	101670	hom	ref	=	=	=											8						1.17	N
2066	2	chr1	101670	101694	no-call	complex	=	?	?											-38						1.17	N
2067	2	chr1	101694	101712	hom	ref	=	=	=											18						1.17	N
2068	2	chr1	101712	101739	no-call	complex	=	?	?											-12						1.17	N
2069	2	chr1	101739	101792	hom	ref	=	=	=											14						1.17	N
2070	2	chr1	101792	101839	no-call	complex	=	?	?											-47						1.17	N
2071	2	chr1	101839	101864	hom	ref	=	=	=											2						1.17	N
2072	2	chr1	101864	101865	half	ref	A	A	N	23	125	853	854							2				AluSx:Alu:14.3	14	1.17	N
2073	2	chr1	101865	101868	hom	ref	=	=	=											2						1.17	N
2074	2	chr1	101868	101871	half	ref	TGA	TGA	NGN	25	125	853	854							9				AluSx:Alu:14.3	14	1.17	N
2075	2	chr1	101871	101881	hom	ref	=	=	=											-24						1.17	N
2076	2	chr1	101881	101882	half	ref	T	T	?	125	0	853	854							-24				AluSx:Alu:14.3	14	1.17	N
2077	2	chr1	101882	101899	hom	ref	=	=	=											-24						1.17	N
2078	2	chr1	101899	101918	no-call	complex	=	?	?											-314						1.17	N
2079	2	chr1	101918	101984	hom	ref	=	=	=											-85						1.17	N
2080	2	chr1	101984	101991	no-call	complex	=	?	?											-41						1.17	N
2081	2	chr1	101991	102108	hom	ref	=	=	=											12						1.17	N
2082	2	chr1	102108	102148	no-call	complex	=	?	?											-54						1.17	N
2083	2	chr1	102148	102167	hom	ref	=	=	=											10						1.17	N
2084	2	chr1	102167	102174	no-call	complex	=	?	?											-28						1.17	N
2085	2	chr1	102174	102209	hom	ref	=	=	=											-7						1.17	N
2086	2	chr1	102209	102210	half	ref	A	A	N	120	120	857	858							-7					14	1.17	N
2087	2	chr1	102210	102236	hom	ref	=	=	=											-7						1.17	N
2088	2	chr1	102236	102237	half	ref	G	G	N	120	120	857	858							7					14	1.17	N
2089	2	chr1	102237	102441	hom	ref	=	=	=											1						1.17	N
2090	2	chr1	102441	102442	half	ref	C	C	N	101	101									1					14	1.17	N
2091	2	chr1	102442	102493	hom	ref	=	=	=											-3						1.17	N
2092	2	chr1	102493	102509	no-call	complex	=	?	?											-4						1.17	N
2093	2	chr1	102509	102589	hom	ref	=	=	=											13						1.17	N
2094	2	chr1	102589	102599	no-call	complex	=	?	?											-183						1.17	N
2095	2	chr1	102599	102660	hom	ref	=	=	=											15						1.17	N
2096	2	chr1	102660	102667	no-call	complex	=	?	?											-61						1.17	N
2097	2	chr1	102667	102693	hom	ref	=	=	=											45						1.17	N
2098	2	chr1	102693	102711	no-call	complex	=	?	?											1						1.17	N
2099	2	chr1	102711	102756	hom	ref	=	=	=											25						1.17	N
2100	2	chr1	102756	102772	no-call	complex	=	?	?											-223						1.17	N
2101	2	chr1	102772	102779	hom	ref	=	=	=											22						1.17	N
2102	2	chr1	102779	102818	no-call	complex	=	?	?											-102						1.17	N
2103	2	chr1	102818	102853	hom	ref	=	=	=											-8						1.17	N
2104	2	chr1	102853	102854	half	ref	G	G	N	22	78	859	860							-8				L3:CR1:44.0	14	1.17	N
2105	2	chr1	102854	102863	hom	ref	=	=	=											-8						1.17	N
2106	2	chr1	102863	102863	half	ref			?	52	0	859	860							2				L3:CR1:44.0	14	1.17	N
2107	2	chr1	102863	102865	hom	ref	=	=	=											-13						1.17	N
2108	2	chr1	102865	102866	half	ref	A	A	?	35	0	859	860							-13				L3:CR1:44.0	14	1.17	N
2109	2	chr1	102866	102930	hom	ref	=	=	=											-13						1.17	N
2110	2	chr1	102930	102972	no-call	complex	=	?	?											-238						1.17	N
2111	2	chr1	102972	102983	hom	ref	=	=	=											21						1.17	N
2112	2	chr1	102983	103010	no-call	complex	=	?	?											-164						1.17	N
2113	2	chr1	103010	103029	hom	ref	=	=	=											11						1.17	N
2114	2	chr1	103029	103069	no-call	complex	=	?	?											3						1.17	N
2115	2	chr1	103069	103076	hom	ref	=	=	=											16						1.17	N
2116	2	chr1	103076	103119	no-call	complex	=	?	?											-40						1.17	N
2117	2	chr1	103119	103169	hom	ref	=	=	=											10						1.17	N
2118	2	chr1	103169	103211	no-call	complex	=	?	?											-51						1.17	N
2119	2	chr1	103211	103222	hom	ref	=	=	=											14						1.17	N
2120	2	chr1	103222	103244	no-call	complex	=	?	?											-45						1.17	N
2121	2	chr1	103244	103296	hom	ref	=	=	=											-20						1.17	N
2122	2	chr1	103296	103297	half	ref	A	A	N	40	98									1				L3:CR1:44.0	14	1.17	N
2123	2	chr1	103297	103314	hom	ref	=	=	=											1						1.17	N
2124	2	chr1	103314	103344	no-call	complex	=	?	?											-22						1.17	N
2125	2	chr1	103344	103373	hom	ref	=	=	=											10						1.17	N
2126	2	chr1	103373	103416	no-call	complex	=	?	?											-51						1.17	N
2127	2	chr1	103416	103440	hom	ref	=	=	=											21						1.17	N
2128	2	chr1	103440	103478	no-call	complex	=	?	?											-114						1.17	N
2129	2	chr1	103478	103512	hom	ref	=	=	=											10						1.17	N
2130	2	chr1	103512	103548	no-call	complex	=	?	?											-55						1.17	N
2131	2	chr1	103548	103565	hom	ref	=	=	=											15						1.17	N
2132	2	chr1	103565	103587	no-call	complex	=	?	?											-15						1.17	N
2133	2	chr1	103587	103605	hom	ref	=	=	=											20						1.17	N
2134	2	chr1	103605	103628	no-call	complex	=	?	?											-107						1.17	N
2135	2	chr1	103628	103740	hom	ref	=	=	=											7						1.17	N
2136	2	chr1	103740	103762	no-call	complex	=	?	?											-327						1.17	N
2137	2	chr1	103762	103832	hom	ref	=	=	=											-39						1.17	N
2138	2	chr1	103832	103833	half	ref	T	T	N	111	111									0				AluSq:Alu:10.9	15	1.17	N
2139	2	chr1	103833	103843	hom	ref	=	=	=											0						1.17	N
2140	2	chr1	103843	103924	no-call	complex	=	?	?											-89						1.17	N
2141	2	chr1	103924	103961	hom	ref	=	=	=											28						1.17	N
2142	2	chr1	103961	103986	no-call	complex	=	?	?											-11						1.17	N
2143	2	chr1	103986	104013	hom	ref	=	=	=											48						1.17	N
2144	2	chr1	104013	104036	no-call	complex	=	?	?											-663						1.17	N
2145	2	chr1	104036	104068	hom	ref	=	=	=											39						1.17	N
2146	2	chr1	104068	104075	no-call	complex	=	?	?											-88						1.17	N
2147	2	chr1	104075	104103	hom	ref	=	=	=											27						1.17	N
2148	2	chr1	104103	104141	no-call	complex	=	?	?											-698						1.17	N
2149	2	chr1	104141	104155	hom	ref	=	=	=											10						1.17	N
2150	2	chr1	104155	104203	no-call	complex	=	?	?											-64						1.17	N
2151	2	chr1	104203	104209	hom	ref	=	=	=											24						1.17	N
2152	2	chr1	104209	104246	no-call	complex	=	?	?											-84						1.17	N
2153	2	chr1	104246	104304	hom	ref	=	=	=											19						1.17	N
2154	2	chr1	104304	104352	no-call	complex	=	?	?											-566						1.17	N
2155	2	chr1	104352	104407	hom	ref	=	=	=											18						1.17	N
2156	2	chr1	104407	104414	no-call	complex	=	?	?											-919						1.17	N
2157	2	chr1	104414	104548	hom	ref	=	=	=											14						1.17	N
2158	2	chr1	104548	104556	no-call	complex	=	?	?											-472						1.17	N
2159	2	chr1	104556	104610	hom	ref	=	=	=											26						1.17	N
2160	2	chr1	104610	104635	no-call	complex	=	?	?											-72						1.17	N
2161	2	chr1	104635	104693	hom	ref	=	=	=											18						1.17	N
2162	2	chr1	104693	104723	no-call	complex	=	?	?											-99						1.17	N
2163	2	chr1	104723	104818	hom	ref	=	=	=											36						1.17	N
2164	2	chr1	104818	104864	no-call	complex	=	?	?											-180						1.17	N
2165	2	chr1	104864	104937	hom	ref	=	=	=											17						1.17	N
2166	2	chr1	104937	104977	no-call	complex	=	?	?											-102						1.17	N
2167	2	chr1	104977	105119	hom	ref	=	=	=											-4						1.17	N
2168	2	chr1	105119	105126	no-call	complex	=	?	?											-1058						1.17	N
2169	2	chr1	105126	105177	hom	ref	=	=	=											24						1.17	N
2170	2	chr1	105177	105198	no-call	complex	=	?	?											-323						1.17	N
2171	2	chr1	105198	105209	hom	ref	=	=	=											47						1.17	N
2172	2	chr1	105209	105224	no-call	complex	=	?	?											-92						1.17	N
2173	2	chr1	105224	105275	hom	ref	=	=	=											23						1.17	N
2174	2	chr1	105275	105313	no-call	complex	=	?	?											-850						1.17	N
2175	2	chr1	105313	105329	hom	ref	=	=	=											13						1.17	N
2176	2	chr1	105329	105353	no-call	complex	=	?	?											-74						1.17	N
2177	2	chr1	105353	105432	hom	ref	=	=	=											15						1.17	N
2178	2	chr1	105432	105448	no-call	complex	=	?	?											-107						1.17	N
2179	2	chr1	105448	105475	hom	ref	=	=	=											37						1.17	N
2180	2	chr1	105475	105492	no-call	complex	=	?	?											-1260						1.17	N
2181	2	chr1	105492	105604	hom	ref	=	=	=											6						1.17	N
2182	2	chr1	105604	105637	no-call	complex	=	?	?											-217						1.17	N
2183	2	chr1	105637	105696	hom	ref	=	=	=											10						1.17	N
2184	2	chr1	105696	105719	no-call	complex	=	?	?											-488						1.17	N
2185	2	chr1	105719	105728	hom	ref	=	=	=											15						1.17	N
2186	2	chr1	105728	105742	no-call	complex	=	?	?											-157						1.17	N
2187	2	chr1	105742	105770	hom	ref	=	=	=											13						1.17	N
2188	2	chr1	105770	105794	no-call	complex	=	?	?											-346						1.17	N
2189	2	chr1	105794	105828	hom	ref	=	=	=											25						1.17	N
2190	2	chr1	105828	105835	no-call	complex	=	?	?											-33						1.17	N
2191	2	chr1	105835	105863	hom	ref	=	=	=											20						1.17	N
2192	2	chr1	105863	105893	no-call	complex	=	?	?											-197						1.17	N
2193	2	chr1	105893	105982	hom	ref	=	=	=											-16						1.17	N
2194	2	chr1	105982	106059	no-call	complex	=	?	?											-337						1.17	N
2195	2	chr1	106059	106107	hom	ref	=	=	=											-21						1.17	N
2196	2	chr1	106107	106167	no-call	complex	=	?	?											-173						1.17	N
2197	2	chr1	106167	106238	hom	ref	=	=	=											-3						1.17	N
2198	2	chr1	106238	106245	no-call	complex	=	?	?											-19						1.17	N
2199	2	chr1	106245	106320	hom	ref	=	=	=											10						1.17	N
2200	2	chr1	106320	106347	no-call	complex	=	?	?											-206						1.17	N
2201	2	chr1	106347	106363	hom	ref	=	=	=											8						1.17	N
2202	2	chr1	106363	106364	half	ref	C	C	N	61	121									8					10	1.17	N
2203	2	chr1	106364	106406	hom	ref	=	=	=											8						1.17	N
2204	2	chr1	106406	106437	no-call	complex	=	?	?											-128						1.17	N
2205	2	chr1	106437	106452	hom	ref	=	=	=											14						1.17	N
2206	2	chr1	106452	106492	no-call	complex	=	?	?											-85						1.17	N
2207	2	chr1	106492	106504	hom	ref	=	=	=											11						1.17	N
2208	2	chr1	106504	106508	half	ref	AATA	AATA	?	46	0									3				MER5B:hAT-Charlie:39.2	10	1.17	N
2209	2	chr1	106508	106516	hom	ref	=	=	=											3						1.17	N
2210	2	chr1	106516	106567	no-call	complex	=	?	?											-117						1.17	N
2211	2	chr1	106567	106589	hom	ref	=	=	=											27						1.17	N
2212	2	chr1	106589	106628	no-call	complex	=	?	?											-78						1.17	N
2213	2	chr1	106628	106637	hom	ref	=	=	=											10						1.17	N
2214	2	chr1	106637	106676	no-call	complex	=	?	?											-321						1.17	N
2215	2	chr1	106676	106813	hom	ref	=	=	=											-15						1.17	N
2216	2	chr1	106813	106814	half	ref	C	C	N	121	121									-15					10	1.17	N
2217	2	chr1	106814	106852	hom	ref	=	=	=											-15						1.17	N
2218	2	chr1	106852	106888	no-call	complex	=	?	?											-60						1.17	N
2219	2	chr1	106888	106909	hom	ref	=	=	=											35						1.17	N
2220	2	chr1	106909	106955	no-call	complex	=	?	?											-814						1.17	N
2221	2	chr1	106955	106966	hom	ref	=	=	=											38						1.17	N
2222	2	chr1	106966	106973	no-call	complex	=	?	?											-36						1.17	N
2223	2	chr1	106973	107155	hom	ref	=	=	=											-55						1.17	N
2224	2	chr1	107155	107156	half	ref	C	C	N	74	120									29					10	1.17	N
2225	2	chr1	107156	107231	hom	ref	=	=	=											29						1.17	N
2226	2	chr1	107231	107275	no-call	complex	=	?	?											-234						1.17	N
2227	2	chr1	107275	107324	hom	ref	=	=	=											27						1.17	N
2228	2	chr1	107324	107355	no-call	complex	=	?	?											-165						1.17	N
2229	2	chr1	107355	107460	hom	ref	=	=	=											20						1.17	N
2230	2	chr1	107460	107467	no-call	complex	=	?	?											-169						1.17	N
2231	2	chr1	107467	107504	hom	ref	=	=	=											15						1.17	N
2232	2	chr1	107504	107545	no-call	complex	=	?	?											-173						1.17	N
2233	2	chr1	107545	107890	hom	ref	=	=	=											-34						1.17	N
2234	2	chr1	107890	107897	no-call	complex	=	?	?											-8						1.17	N
2235	2	chr1	107897	107966	hom	ref	=	=	=											15						1.17	N
2236	2	chr1	107966	107973	no-call	complex	=	?	?											-634						1.17	N
2237	2	chr1	107973	108281	hom	ref	=	=	=											-40						1.17	N
2238	2	chr1	108281	108313	no-call	complex	=	?	?											-163						1.17	N
2239	2	chr1	108313	108361	hom	ref	=	=	=											10						1.17	N
2240	2	chr1	108361	108368	no-call	complex	=	?	?											-92						1.17	N
2241	2	chr1	108368	108400	hom	ref	=	=	=											25						1.17	N
2242	2	chr1	108400	108420	no-call	complex	=	?	?											-133						1.17	N
2243	2	chr1	108420	108536	hom	ref	=	=	=											-14						1.17	N
2244	2	chr1	108536	108569	no-call	complex	=	?	?											-198						1.17	N
2245	2	chr1	108569	108596	hom	ref	=	=	=											71						1.17	N
2246	2	chr1	108596	108632	no-call	complex	=	?	?											-97						1.17	N
2247	2	chr1	108632	108771	hom	ref	=	=	=											-16						1.17	N
2248	2	chr1	108771	108788	no-call	complex	=	?	?											-187						1.17	N
2249	2	chr1	108788	108823	hom	ref	=	=	=											26						1.17	N
2250	2	chr1	108823	108850	no-call	complex	=	?	?											-69						1.17	N
2251	2	chr1	108850	108867	hom	ref	=	=	=											13						1.17	N
2252	2	chr1	108867	108901	no-call	complex	=	?	?											-254						1.17	N
2253	2	chr1	108901	108997	hom	ref	=	=	=											17						1.17	N
2254	2	chr1	108997	109004	no-call	complex	=	?	?											-65						1.17	N
2255	2	chr1	109004	109166	hom	ref	=	=	=											1						1.17	N
2256	2	chr1	109166	109224	no-call	complex	=	?	?											-92						1.17	N
2257	2	chr1	109224	109255	hom	ref	=	=	=											12						1.17	N
2258	2	chr1	109255	109275	no-call	complex	=	?	?											-24						1.17	N
2259	2	chr1	109275	109324	hom	ref	=	=	=											4						1.17	N
2260	2	chr1	109324	109325	half	ref	T	T	N	21	21									4					11	1.17	N
2261	2	chr1	109325	109453	hom	ref	=	=	=											-20						1.17	N
2262	2	chr1	109453	109491	no-call	complex	=	?	?											-476						1.17	N
2263	2	chr1	109491	109571	hom	ref	=	=	=											-19						1.17	N
2264	2	chr1	109571	109651	no-call	complex	=	?	?											-80						1.17	N
2265	2	chr1	109651	109706	hom	ref	=	=	=											-6						1.17	N
2266	2	chr1	109706	109735	no-call	complex	=	?	?											-83						1.17	N
2267	2	chr1	109735	109777	hom	ref	=	=	=											30						1.17	N
2268	2	chr1	109777	109853	no-call	complex	=	?	?											-109						1.17	N
2269	2	chr1	109853	109873	hom	ref	=	=	=											29						1.17	N
2270	2	chr1	109873	109880	no-call	complex	=	?	?											-59						1.17	N
2271	2	chr1	109880	109963	hom	ref	=	=	=											18						1.17	N
2272	2	chr1	109963	109970	no-call	complex	=	?	?											-51						1.17	N
2273	2	chr1	109970	110003	hom	ref	=	=	=											26						1.17	N
2274	2	chr1	110003	110010	no-call	complex	=	?	?											-2						1.17	N
2275	2	chr1	110010	110150	hom	ref	=	=	=											15						1.17	N
2276	2	chr1	110150	110157	no-call	complex	=	?	?											-27						1.17	N
2277	2	chr1	110157	110376	hom	ref	=	=	=											-4						1.17	N
2278	2	chr1	110376	110422	no-call	complex	=	?	?											-100						1.17	N
2279	2	chr1	110422	110438	hom	ref	=	=	=											26						1.17	N
2280	2	chr1	110438	110470	no-call	complex	=	?	?											-58						1.17	N
2281	2	chr1	110470	110541	hom	ref	=	=	=											31						1.17	N
2282	2	chr1	110541	110548	no-call	complex	=	?	?											-51						1.17	N
2283	2	chr1	110548	110602	hom	ref	=	=	=											31						1.17	N
2284	2	chr1	110602	110610	no-call	complex	=	?	?											-123						1.17	N
2285	2	chr1	110610	110699	hom	ref	=	=	=											19						1.17	N
2286	2	chr1	110699	110706	no-call	complex	=	?	?											-77						1.17	N
2287	2	chr1	110706	110742	hom	ref	=	=	=											15						1.17	N
2288	2	chr1	110742	110786	no-call	complex	=	?	?											-221						1.17	N
2289	2	chr1	110786	110840	hom	ref	=	=	=											17						1.17	N
2290	2	chr1	110840	110848	no-call	complex	=	?	?											4						1.17	N
2291	2	chr1	110848	110944	hom	ref	=	=	=											-14						1.17	N
2292	2	chr1	110944	110945	no-call	complex	=	?	?											-14						1.17	N
2293	2	chr1	110945	111045	hom	ref	=	=	=											-14						1.17	N
2294	2	chr1	111045	111052	no-call	complex	=	?	?											-28						1.17	N
2295	2	chr1	111052	111073	hom	ref	=	=	=											44						1.17	N
2296	2	chr1	111073	111115	no-call	complex	=	?	?											-39						1.17	N
2297	2	chr1	111115	111157	hom	ref	=	=	=											-5						1.17	N
2298	2	chr1	111157	111158	half	ref	T	T	N	121	121									-6				AluSq2:Alu:11.7	20	1.17	N
2299	2	chr1	111158	111228	hom	ref	=	=	=											-10						1.17	N
2300	2	chr1	111228	111241	no-call	complex	=	?	?											-114						1.17	N
2301	2	chr1	111241	111358	hom	ref	=	=	=											-18						1.17	N
2302	2	chr1	111358	111403	no-call	complex	=	?	?											-175						1.17	N
2303	2	chr1	111403	111471	hom	ref	=	=	=											-6						1.17	N
2304	2	chr1	111471	111529	no-call	complex	=	?	?											-120						1.17	N
2305	2	chr1	111529	111560	hom	ref	=	=	=											20						1.17	N
2306	2	chr1	111560	111631	no-call	complex	=	?	?											-139						1.17	N
2307	2	chr1	111631	111703	hom	ref	=	=	=											2						1.17	N
2308	2	chr1	111703	111718	no-call	complex	=	?	?											-186						1.17	N
2309	2	chr1	111718	111753	hom	ref	=	=	=											-15						1.17	N
2310	2	chr1	111753	111753	half	ref			?	30	0	951	952							17					20	1.17	N
2311	2	chr1	111753	111763	hom	ref	=	=	=											17						1.17	N
2312	2	chr1	111763	111763	half	ref			?	30	0	951	952							21					20	1.17	N
2313	2	chr1	111763	111779	hom	ref	=	=	=											1						1.17	N
2314	2	chr1	111779	111780	half	ref	A	A	N	52	52									9					20	1.17	N
2315	2	chr1	111780	111785	hom	ref	=	=	=											9						1.17	N
2316	2	chr1	111785	111786	half	ref	C	C	N	52	52									15					20	1.17	N
2317	2	chr1	111786	111790	hom	ref	=	=	=											11						1.17	N
2318	2	chr1	111790	111790	half	ref			?	22	0									27					20	1.17	N
2319	2	chr1	111790	111796	hom	ref	=	=	=											-6						1.17	N
2320	2	chr1	111796	111800	half	ref	TTTC	TTTC	?	52	0	953	954							-6					20	1.17	N
2321	2	chr1	111800	111805	hom	ref	=	=	=											21						1.17	N
2322	2	chr1	111805	111806	half	ref	A	A	N	52	52	953	954							14					20	1.17	N
2323	2	chr1	111806	111810	hom	ref	=	=	=											3						1.17	N
2324	2	chr1	111810	111811	half	ref	T	T	N	52	52	953	954							3					20	1.17	N
2325	2	chr1	111811	111854	hom	ref	=	=	=											-23						1.17	N
2326	2	chr1	111854	111901	no-call	complex	=	?	?											-22						1.17	N
2327	2	chr1	111901	111924	hom	ref	=	=	=											13						1.17	N
2328	2	chr1	111924	111931	no-call	complex	=	?	?											-5						1.17	N
2329	2	chr1	111931	111951	hom	ref	=	=	=											-10						1.17	N
2330	2	chr1	111951	111952	half	ref	A	A	N	34	105	957	958							-10					20	1.17	N
2331	2	chr1	111952	111984	hom	ref	=	=	=											-10						1.17	N
2332	2	chr1	111984	111985	half	ref	G	G	N	49	102	957	958							9					20	1.17	N
2333	2	chr1	111985	112004	hom	ref	=	=	=											9						1.17	N
2334	2	chr1	112004	112043	no-call	complex	=	?	?											-26						1.17	N
2335	2	chr1	112043	112056	hom	ref	=	=	=											14						1.17	N
2336	2	chr1	112056	112087	no-call	complex	=	?	?											-95						1.17	N
2337	2	chr1	112087	112101	hom	ref	=	=	=											22						1.17	N
2338	2	chr1	112101	112155	no-call	complex	=	?	?											-64						1.17	N
2339	2	chr1	112155	112160	hom	ref	=	=	=											14						1.17	N
2340	2	chr1	112160	112181	no-call	complex	=	?	?											-30						1.17	N
2341	2	chr1	112181	112215	hom	ref	=	=	=											7						1.17	N
2342	2	chr1	112215	112216	half	ref	C	C	N	120	120									7				L2b:L2:47.3	20	1.17	N
2343	2	chr1	112216	112239	hom	ref	=	=	=											6						1.17	N
2344	2	chr1	112239	112254	no-call	complex	=	?	?											-104						1.17	N
2345	2	chr1	112254	112336	hom	ref	=	=	=											-37						1.17	N
2346	2	chr1	112336	112383	no-call	complex	=	?	?											-51						1.17	N
2347	2	chr1	112383	112388	hom	ref	=	=	=											10						1.17	N
2348	2	chr1	112388	112461	no-call	complex	=	?	?											-52						1.17	N
2349	2	chr1	112461	112482	hom	ref	=	=	=											15						1.17	N
2350	2	chr1	112482	112489	no-call	complex	=	?	?											-152						1.17	N
2351	2	chr1	112489	112523	hom	ref	=	=	=											11						1.17	N
2352	2	chr1	112523	112537	no-call	complex	=	?	?											-79						1.17	N
2353	2	chr1	112537	112607	hom	ref	=	=	=											0						1.17	N
2354	2	chr1	112607	112608	half	ref	A	A	?	41	0									0					20	1.17	N
2355	2	chr1	112608	112649	hom	ref	=	=	=											0						1.17	N
2356	2	chr1	112649	112656	no-call	complex	=	?	?											-18						1.17	N
2357	2	chr1	112656	112678	hom	ref	=	=	=											10						1.17	N
2358	2	chr1	112678	112708	no-call	complex	=	?	?											-43						1.17	N
2359	2	chr1	112708	112732	hom	ref	=	=	=											13						1.17	N
2360	2	chr1	112732	112800	no-call	complex	=	?	?											-219						1.17	N
2361	2	chr1	112800	112812	hom	ref	=	=	=											10						1.17	N
2362	2	chr1	112812	112861	no-call	complex	=	?	?											-190						1.17	N
2363	2	chr1	112861	112879	hom	ref	=	=	=											20						1.17	N
2364	2	chr1	112879	112897	no-call	complex	=	?	?											-2						1.17	N
2365	2	chr1	112897	112924	hom	ref	=	=	=											12						1.17	N
2366	2	chr1	112924	112971	no-call	complex	=	?	?											-80						1.17	N
2367	2	chr1	112971	112999	hom	ref	=	=	=											12						1.17	N
2368	2	chr1	112999	113015	no-call	complex	=	?	?											-41						1.17	N
2369	2	chr1	113015	113071	hom	ref	=	=	=											12						1.17	N
2370	2	chr1	113071	113152	no-call	complex	=	?	?											-188						1.17	N
2371	2	chr1	113152	113198	hom	ref	=	=	=											-23						1.17	N
2372	2	chr1	113198	113198	half	ref			?	22	0									2					20	1.17	N
2373	2	chr1	113198	113252	hom	ref	=	=	=											2						1.17	N
2374	2	chr1	113252	113275	no-call	complex	=	?	?											-6						1.17	N
2375	2	chr1	113275	113315	hom	ref	=	=	=											1						1.17	N
2376	2	chr1	113315	113360	no-call	complex	=	?	?											-42						1.17	N
2377	2	chr1	113360	113369	hom	ref	=	=	=											24						1.17	N
2378	2	chr1	113369	113384	no-call	complex	=	?	?											-87						1.17	N
2379	2	chr1	113384	113489	hom	ref	=	=	=											12						1.17	N
2380	2	chr1	113489	113531	no-call	complex	=	?	?											3						1.17	N
2381	2	chr1	113531	113544	hom	ref	=	=	=											26						1.17	N
2382	2	chr1	113544	113576	no-call	complex	=	?	?											-70						1.17	N
2383	2	chr1	113576	113600	hom	ref	=	=	=											11						1.17	N
2384	2	chr1	113600	113627	no-call	complex	=	?	?											-96						1.17	N
2385	2	chr1	113627	113792	hom	ref	=	=	=											-4						1.17	N
2386	2	chr1	113792	113825	no-call	complex	=	?	?											-36						1.17	N
2387	2	chr1	113825	113936	hom	ref	=	=	=											2						1.17	N
2388	2	chr1	113936	113973	no-call	complex	=	?	?											-154						1.17	N
2389	2	chr1	113973	113997	hom	ref	=	=	=											12						1.17	N
2390	2	chr1	113997	114045	no-call	complex	=	?	?											-17						1.17	N
2391	2	chr1	114045	114094	hom	ref	=	=	=											-13						1.17	N
2392	2	chr1	114094	114143	no-call	complex	=	?	?											-95						1.17	N
2393	2	chr1	114143	114196	hom	ref	=	=	=											-30						1.17	N
2394	2	chr1	114196	114210	no-call	complex	=	?	?											-44						1.17	N
2395	2	chr1	114210	114227	hom	ref	=	=	=											14						1.17	N
2396	2	chr1	114227	114299	no-call	complex	=	?	?											-40						1.17	N
2397	2	chr1	114299	114313	hom	ref	=	=	=											11						1.17	N
2398	2	chr1	114313	114349	no-call	complex	=	?	?											-40						1.17	N
2399	2	chr1	114349	114370	hom	ref	=	=	=											10						1.17	N
2400	2	chr1	114370	114424	no-call	complex	=	?	?											-28						1.17	N
2401	2	chr1	114424	114464	hom	ref	=	=	=											11						1.17	N
2402	2	chr1	114464	114509	no-call	complex	=	?	?											-256						1.17	N
2403	2	chr1	114509	114542	hom	ref	=	=	=											18						1.17	N
2404	2	chr1	114542	114565	no-call	complex	=	?	?											4						1.17	N
2405	2	chr1	114565	114651	hom	ref	=	=	=											0						1.17	N
2406	2	chr1	114651	114705	no-call	complex	=	?	?											-81						1.17	N
2407	2	chr1	114705	114712	hom	ref	=	=	=											14						1.17	N
2408	2	chr1	114712	114741	no-call	complex	=	?	?											-16						1.17	N
2409	2	chr1	114741	114761	hom	ref	=	=	=											15						1.17	N
2410	2	chr1	114761	114790	no-call	complex	=	?	?											-31						1.17	N
2411	2	chr1	114790	114869	hom	ref	=	=	=											-92						1.17	N
2412	2	chr1	114869	114902	no-call	complex	=	?	?											-9						1.17	N
2413	2	chr1	114902	114960	hom	ref	=	=	=											11						1.17	N
2414	2	chr1	114960	115002	no-call	complex	=	?	?											-5						1.17	N
2415	2	chr1	115002	115008	hom	ref	=	=	=											10						1.17	N
2416	2	chr1	115008	115050	no-call	complex	=	?	?											-42						1.17	N
2417	2	chr1	115050	115121	hom	ref	=	=	=											-10						1.17	N
2418	2	chr1	115121	115171	no-call	complex	=	?	?											-18						1.17	N
2419	2	chr1	115171	115195	hom	ref	=	=	=											16						1.17	N
2420	2	chr1	115195	115210	no-call	complex	=	?	?											-19						1.17	N
2421	2	chr1	115210	115221	hom	ref	=	=	=											11						1.17	N
2422	2	chr1	115221	115277	no-call	complex	=	?	?											-3						1.17	N
2423	2	chr1	115277	115282	hom	ref	=	=	=											16						1.17	N
2424	2	chr1	115282	115289	no-call	complex	=	?	?											-182						1.17	N
2425	2	chr1	115289	115309	hom	ref	=	=	=											12						1.17	N
2426	2	chr1	115309	115336	no-call	complex	=	?	?											-92						1.17	N
2427	2	chr1	115336	115387	hom	ref	=	=	=											8						1.17	N
2428	2	chr1	115387	115387	half	ref			?	36	0									11				L2:L2:43.7	20	1.17	N
2429	2	chr1	115387	115430	hom	ref	=	=	=											9						1.17	N
2430	2	chr1	115430	115457	no-call	complex	=	?	?											-160						1.17	N
2431	2	chr1	115457	115470	hom	ref	=	=	=											11						1.17	N
2432	2	chr1	115470	115508	no-call	complex	=	?	?											-31						1.17	N
2433	2	chr1	115508	115519	hom	ref	=	=	=											24						1.17	N
2434	2	chr1	115519	115560	no-call	complex	=	?	?											-20						1.17	N
2435	2	chr1	115560	115583	hom	ref	=	=	=											31						1.17	N
2436	2	chr1	115583	115608	no-call	complex	=	?	?											-265						1.17	N
2437	2	chr1	115608	115661	hom	ref	=	=	=											-49						1.17	N
2438	2	chr1	115661	115668	no-call	complex	=	?	?											-20						1.17	N
2439	2	chr1	115668	115694	hom	ref	=	=	=											15						1.17	N
2440	2	chr1	115694	115752	no-call	complex	=	?	?											-35						1.17	N
2441	2	chr1	115752	115759	hom	ref	=	=	=											12						1.17	N
2442	2	chr1	115759	115805	no-call	complex	=	?	?											-23						1.17	N
2443	2	chr1	115805	115819	hom	ref	=	=	=											12						1.17	N
2444	2	chr1	115819	115853	no-call	complex	=	?	?											-67						1.17	N
2445	2	chr1	115853	115870	hom	ref	=	=	=											10						1.17	N
2446	2	chr1	115870	115918	no-call	complex	=	?	?											-27						1.17	N
2447	2	chr1	115918	116015	hom	ref	=	=	=											-13						1.17	N
2448	2	chr1	116015	116057	no-call	complex	=	?	?											-11						1.17	N
2449	2	chr1	116057	116081	hom	ref	=	=	=											12						1.17	N
2450	2	chr1	116081	116111	no-call	complex	=	?	?											-67						1.17	N
2451	2	chr1	116111	116121	hom	ref	=	=	=											21						1.17	N
2452	2	chr1	116121	116170	no-call	complex	=	?	?											-44						1.17	N
2453	2	chr1	116170	116246	hom	ref	=	=	=											-32						1.17	N
2454	2	chr1	116246	116249	half	ref	GAT	GAT	?	40	0									-8					20	1.17	N
2455	2	chr1	116249	116263	hom	ref	=	=	=											-8						1.17	N
2456	2	chr1	116263	116309	no-call	complex	=	?	?											-120						1.17	N
2457	2	chr1	116309	116467	hom	ref	=	=	=											-7						1.17	N
2458	2	chr1	116467	116468	half	ref	A	A	N	63	109	1043	1044							-7				L2a:L2:36.4	20	1.17	N
2459	2	chr1	116468	116471	hom	ref	=	=	=											-7						1.17	N
2460	2	chr1	116471	116471	half	ref			?	28	0	1043	1044							10				L2a:L2:36.4	20	1.17	N
2461	2	chr1	116471	116482	hom	ref	=	=	=											4						1.17	N
2462	2	chr1	116482	116501	no-call	complex	=	?	?											-12						1.17	N
2463	2	chr1	116501	116508	hom	ref	=	=	=											12						1.17	N
2464	2	chr1	116508	116568	no-call	complex	=	?	?											-43						1.17	N
2465	2	chr1	116568	116583	hom	ref	=	=	=											-71						1.17	N
2466	2	chr1	116583	116584	half	ref	G	G	N	120	120									-71				L2a:L2:36.4	20	1.17	N
2467	2	chr1	116584	116632	hom	ref	=	=	=											-71						1.17	N
2468	2	chr1	116632	116632	half	ref			?	39	0	1047	1048							8				L2a:L2:36.4	20	1.17	N
2469	2	chr1	116632	116645	hom	ref	=	=	=											4						1.17	N
2470	2	chr1	116645	116646	half	ref	C	C	N	121	121	1047	1048							4				L2a:L2:36.4	20	1.17	N
2471	2	chr1	116646	116682	hom	ref	=	=	=											4						1.17	N
2472	2	chr1	116682	116689	no-call	complex	=	?	?											-25						1.17	N
2473	2	chr1	116689	116732	hom	ref	=	=	=											-28						1.17	N
2474	2	chr1	116732	116732	half	ref			?	25	0									32				L2a:L2:36.4	20	1.17	N
2475	2	chr1	116732	116781	hom	ref	=	=	=											-39						1.17	N
2476	2	chr1	116781	116782	half	ref	T	T	N	36	99									-39				L2a:L2:36.4	20	1.17	N
2477	2	chr1	116782	116805	hom	ref	=	=	=											-39						1.17	N
2478	2	chr1	116805	116821	no-call	complex	=	?	?											-1						1.17	N
2479	2	chr1	116821	116864	hom	ref	=	=	=											-11						1.17	N
2480	2	chr1	116864	116864	half	ref			?	24	0									6				L2a:L2:36.4	20	1.17	N
2481	2	chr1	116864	116886	hom	ref	=	=	=											6						1.17	N
2482	2	chr1	116886	116933	no-call	complex	=	?	?											-174						1.17	N
2483	2	chr1	116933	116988	hom	ref	=	=	=											11						1.17	N
2484	2	chr1	116988	117002	no-call	complex	=	?	?											-176						1.17	N
2485	2	chr1	117002	117021	hom	ref	=	=	=											10						1.17	N
2486	2	chr1	117021	117059	no-call	complex	=	?	?											-83						1.17	N
2487	2	chr1	117059	117099	hom	ref	=	=	=											-1						1.17	N
2488	2	chr1	117099	117100	no-call	complex	A	N	N	59	59									-1				L1ME3E:L1:29.0	20	1.17	N
2489	2	chr1	117100	117106	hom	ref	=	=	=											-6						1.17	N
2490	2	chr1	117106	117107	half	ref	T	T	N	37	59									6				L1ME3E:L1:29.0	20	1.17	N
2491	2	chr1	117107	117113	hom	ref	=	=	=											0						1.17	N
2492	2	chr1	117113	117114	half	ref	T	T	N	59	59									0				L1ME3E:L1:29.0	20	1.17	N
2493	2	chr1	117114	117123	hom	ref	=	=	=											0						1.17	N
2494	2	chr1	117123	117124	half	ref	T	T	N	59	59									10				L1ME3E:L1:29.0	20	1.17	N
2495	2	chr1	117124	117136	hom	ref	=	=	=											-14						1.17	N
2496	2	chr1	117136	117137	half	ref	C	C	?	59	0									-14				L1ME3E:L1:29.0	20	1.17	N
2497	2	chr1	117137	117147	hom	ref	=	=	=											-21						1.17	N
2498	2	chr1	117147	117148	half	ref	T	T	N	59	33	1055	1056							-21				L1ME3E:L1:29.0	20	1.17	N
2499	2	chr1	117148	117156	hom	ref	=	=	=											-21						1.17	N
2500	2	chr1	117156	117157	half	ref	C	C	N	24	59	1055	1056							-3				L1ME3E:L1:29.0	20	1.17	N
2501	2	chr1	117157	117201	hom	ref	=	=	=											-43						1.17	N
2502	2	chr1	117201	117201	half	ref			?	27	0									20				L1ME3E:L1:29.0	20	1.17	N
2503	2	chr1	117201	117231	hom	ref	=	=	=											18						1.17	N
2504	2	chr1	117231	117259	no-call	complex	=	?	?											-26						1.17	N
2505	2	chr1	117259	117275	hom	ref	=	=	=											14						1.17	N
2506	2	chr1	117275	117288	no-call	complex	=	?	?											-11						1.17	N
2507	2	chr1	117288	117293	hom	ref	=	=	=											24						1.17	N
2508	2	chr1	117293	117354	no-call	complex	=	?	?											-25						1.17	N
2509	2	chr1	117354	117364	hom	ref	=	=	=											13						1.17	N
2510	2	chr1	117364	117410	no-call	complex	=	?	?											-37						1.17	N
2511	2	chr1	117410	117453	hom	ref	=	=	=											-21						1.17	N
2512	2	chr1	117453	117491	no-call	complex	=	?	?											-23						1.17	N
2513	2	chr1	117491	117545	hom	ref	=	=	=											-97						1.17	N
2514	2	chr1	117545	117552	no-call	complex	=	?	?											-209						1.17	N
2515	2	chr1	117552	117606	hom	ref	=	=	=											14						1.17	N
2516	2	chr1	117606	117637	no-call	complex	=	?	?											-31						1.17	N
2517	2	chr1	117637	117751	hom	ref	=	=	=											7						1.17	N
2518	2	chr1	117751	117787	no-call	complex	=	?	?											-129						1.17	N
2519	2	chr1	117787	117800	hom	ref	=	=	=											-3						1.17	N
2520	2	chr1	117800	117803	half	ref	TTA	TTA	NTN	31	79	1071	1072							-17				MLT1D:ERVL-MaLR:29.2	20	1.17	N
2521	2	chr1	117803	117808	hom	ref	=	=	=											-17						1.17	N
2522	2	chr1	117808	117809	half	ref	G	G	N	79	79	1071	1072							12				MLT1D:ERVL-MaLR:29.2	20	1.17	N
2523	2	chr1	117809	117812	hom	ref	=	=	=											-4						1.17	N
2524	2	chr1	117812	117812	half	ref			?	31	0	1071	1072							-4				MLT1D:ERVL-MaLR:29.2	20	1.17	N
2525	2	chr1	117812	117854	hom	ref	=	=	=											-4						1.17	N
2526	2	chr1	117854	117901	no-call	complex	=	?	?											-31						1.17	N
2527	2	chr1	117901	117912	hom	ref	=	=	=											12						1.17	N
2528	2	chr1	117912	117919	no-call	complex	=	?	?											-81						1.17	N
2529	2	chr1	117919	118070	hom	ref	=	=	=											-2						1.17	N
2530	2	chr1	118070	118102	no-call	complex	=	?	?											-8						1.17	N
2531	2	chr1	118102	118111	hom	ref	=	=	=											12						1.17	N
2532	2	chr1	118111	118201	no-call	complex	=	?	?											-169						1.17	N
2533	2	chr1	118201	118243	hom	ref	=	=	=											11						1.17	N
2534	2	chr1	118243	118243	half	ref			?	20	0									25				L1ME3E:L1:40.5	20	1.17	N
2535	2	chr1	118243	118265	hom	ref	=	=	=											-23						1.17	N
2536	2	chr1	118265	118271	half	ref	GGAAAA	GGAAAA	?	90	0									-27				L1ME3E:L1:40.5	20	1.17	N
2537	2	chr1	118271	118346	hom	ref	=	=	=											-6						1.17	N
2538	2	chr1	118346	118434	no-call	complex	=	?	?											-28						1.17	N
2539	2	chr1	118434	118446	hom	ref	=	=	=											18						1.17	N
2540	2	chr1	118446	118477	no-call	complex	=	?	?											-362						1.17	N
2541	2	chr1	118477	118486	hom	ref	=	=	=											19						1.17	N
2542	2	chr1	118486	118519	no-call	complex	=	?	?											-13						1.17	N
2543	2	chr1	118519	118525	hom	ref	=	=	=											13						1.17	N
2544	2	chr1	118525	118555	no-call	complex	=	?	?											-20						1.17	N
2545	2	chr1	118555	118612	hom	ref	=	=	=											12						1.17	N
2546	2	chr1	118612	118640	no-call	complex	=	?	?											-250						1.17	N
2547	2	chr1	118640	118661	hom	ref	=	=	=											11						1.17	N
2548	2	chr1	118661	118687	no-call	complex	=	?	?											-98						1.17	N
2549	2	chr1	118687	118714	hom	ref	=	=	=											20						1.17	N
2550	2	chr1	118714	118728	no-call	complex	=	?	?											0						1.17	N
2551	2	chr1	118728	118803	hom	ref	=	=	=											15						1.17	N
2552	2	chr1	118803	118828	no-call	complex	=	?	?											-37						1.17	N
2553	2	chr1	118828	118842	hom	ref	=	=	=											0						1.17	N
2554	2	chr1	118842	118843	half	ref	A	A	?	23	0	1085	1086							0				L1ME3E:L1:40.5	20	1.17	N
2555	2	chr1	118843	118860	hom	ref	=	=	=											-1						1.17	N
2556	2	chr1	118860	118861	half	ref	T	T	N	59	46	1085	1086							8				L1ME3E:L1:40.5	20	1.17	N
2557	2	chr1	118861	118874	hom	ref	=	=	=											8						1.17	N
2558	2	chr1	118874	118906	no-call	complex	=	?	?											5						1.17	N
2559	2	chr1	118906	118938	hom	ref	=	=	=											-18						1.17	N
2560	2	chr1	118938	118940	half	ref	AA	AA	NN	26	120									-18				L1ME3E:L1:40.5	20	1.17	N
2561	2	chr1	118940	118952	hom	ref	=	=	=											-18						1.17	N
2562	2	chr1	118952	118953	half	ref	A	A	N	39	44									2				L1ME3E:L1:40.5	20	1.17	N
2563	2	chr1	118953	118961	hom	ref	=	=	=											2						1.17	N
2564	2	chr1	118961	118962	half	ref	A	A	N	44	44									8				L1ME3E:L1:40.5	20	1.17	N
2565	2	chr1	118962	118968	hom	ref	=	=	=											-11						1.17	N
2566	2	chr1	118968	118980	half	ref	AACTAAGAAGCT	AACTAAGAAGCT	?	44	0									-31				L1ME3E:L1:40.5	20	1.17	N
2567	2	chr1	118980	118991	hom	ref	=	=	=											-29						1.17	N
2568	2	chr1	118991	118995	half	ref	TATA	TATA	?	35	0									7				L1ME3E:L1:40.5	20	1.17	N
2569	2	chr1	118995	119005	hom	ref	=	=	=											22						1.17	N
2570	2	chr1	119005	119044	no-call	complex	=	?	?											-34						1.17	N
2571	2	chr1	119044	119062	hom	ref	=	=	=											15						1.17	N
2572	2	chr1	119062	119062	half	ref			?	20	0	1091	1092							30				L1ME3E:L1:40.5	20	1.17	N
2573	2	chr1	119062	119065	hom	ref	=	=	=											9						1.17	N
2574	2	chr1	119065	119066	half	ref	A	A	N	32	24	1091	1092							9				L1ME3E:L1:40.5	20	1.17	N
2575	2	chr1	119066	119068	hom	ref	=	=	=											9						1.17	N
2576	2	chr1	119068	119069	half	ref	T	T	N	49	49	1091	1092							10				L1ME3E:L1:40.5	20	1.17	N
2577	2	chr1	119069	119077	hom	ref	=	=	=											-10						1.17	N
2578	2	chr1	119077	119078	half	ref	T	T	N	49	21	1093	1094							-10				L1ME3E:L1:40.5	20	1.17	N
2579	2	chr1	119078	119081	hom	ref	=	=	=											-10						1.17	N
2580	2	chr1	119081	119081	half	ref			?	25	0	1093	1094							30				L1ME3E:L1:40.5	20	1.17	N
2581	2	chr1	119081	119083	hom	ref	=	=	=											24						1.17	N
2582	2	chr1	119083	119083	half	ref			?	25	0	1093	1094							24				L1ME3E:L1:40.5	20	1.17	N
2583	2	chr1	119083	119089	hom	ref	=	=	=											-24						1.17	N
2584	2	chr1	119089	119090	half	ref	A	A	N	49	24	1093	1094							24				L1ME3E:L1:40.5	20	1.17	N
2585	2	chr1	119090	119093	hom	ref	=	=	=											26						1.17	N
2586	2	chr1	119093	119094	half	ref	A	A	?	49	0	1093	1094							31				L1ME3E:L1:40.5	20	1.17	N
2587	2	chr1	119094	119102	hom	ref	=	=	=											4						1.17	N
2588	2	chr1	119102	119103	half	ref	G	G	?	31	0									4					20	1.17	N
2589	2	chr1	119103	119142	hom	ref	=	=	=											4						1.17	N
2590	2	chr1	119142	119182	no-call	complex	=	?	?											-37						1.17	N
2591	2	chr1	119182	119199	hom	ref	=	=	=											4						1.17	N
2592	2	chr1	119199	119200	half	ref	T	T	?	122	0									4					20	1.17	N
2593	2	chr1	119200	119210	hom	ref	=	=	=											4						1.17	N
2594	2	chr1	119210	119425	no-call	complex	=	?	?											-69						1.17	N
2595	2	chr1	119425	119431	hom	ref	=	=	=											11						1.17	N
2596	2	chr1	119431	119506	no-call	complex	=	?	?											-135						1.17	N
2597	2	chr1	119506	119521	hom	ref	=	=	=											13						1.17	N
2598	2	chr1	119521	119558	no-call	complex	=	?	?											-43						1.17	N
2599	2	chr1	119558	119605	hom	ref	=	=	=											12						1.17	N
2600	2	chr1	119605	119623	no-call	complex	=	?	?											-3						1.17	N
2601	2	chr1	119623	119628	hom	ref	=	=	=											18						1.17	N
2602	2	chr1	119628	119668	no-call	complex	=	?	?											-67						1.17	N
2603	2	chr1	119668	119685	hom	ref	=	=	=											9						1.17	N
2604	2	chr1	119685	119686	half	ref	A	A	N	35	123	1103	1104							9				THE1C:ERVL-MaLR:20.3	20	1.17	N
2605	2	chr1	119686	119697	hom	ref	=	=	=											9						1.17	N
2606	2	chr1	119697	119698	half	ref	A	A	N	53	123	1103	1104							11				THE1C:ERVL-MaLR:20.3	20	1.17	N
2607	2	chr1	119698	119702	hom	ref	=	=	=											11						1.17	N
2608	2	chr1	119702	119703	half	ref	G	G	?	55	0	1103	1104							15				THE1C:ERVL-MaLR:20.3	20	1.17	N
2609	2	chr1	119703	119713	hom	ref	=	=	=											4						1.17	N
2610	2	chr1	119713	119721	half	ref	AGCTTCTT	AGCTTCTT	?	43	0	1103	1104							-8				THE1C:ERVL-MaLR:20.3	20	1.17	N
2611	2	chr1	119721	119728	hom	ref	=	=	=											-1						1.17	N
2612	2	chr1	119728	119729	half	ref	C	C	N	65	123	1103	1104							-1				THE1C:ERVL-MaLR:20.3	20	1.17	N
2613	2	chr1	119729	119737	hom	ref	=	=	=											-1						1.17	N
2614	2	chr1	119737	119778	no-call	complex	=	?	?											-28						1.17	N
2615	2	chr1	119778	119793	hom	ref	=	=	=											17						1.17	N
2616	2	chr1	119793	119806	no-call	complex	=	?	?											2						1.17	N
2617	2	chr1	119806	119929	hom	ref	=	=	=											-8						1.17	N
2618	2	chr1	119929	119936	no-call	complex	=	?	?											-56						1.17	N
2619	2	chr1	119936	119964	hom	ref	=	=	=											-31						1.17	N
2620	2	chr1	119964	119964	half	ref			?	35	0	1105	1106							-31					20	1.17	N
2621	2	chr1	119964	119990	hom	ref	=	=	=											-31						1.17	N
2622	2	chr1	119990	119995	half	ref	TTATA	TTATA	?	41	0	1105	1106							0					20	1.17	N
2623	2	chr1	119995	120012	hom	ref	=	=	=											5						1.17	N
2624	2	chr1	120012	120059	no-call	complex	=	?	?											-118						1.17	N
2625	2	chr1	120059	120096	hom	ref	=	=	=											15						1.17	N
2626	2	chr1	120096	120136	no-call	complex	=	?	?											-53						1.17	N
2627	2	chr1	120136	120182	hom	ref	=	=	=											18						1.17	N
2628	2	chr1	120182	120190	no-call	complex	=	?	?											-124						1.17	N
2629	2	chr1	120190	120351	hom	ref	=	=	=											-23						1.17	N
2630	2	chr1	120351	120352	half	ref	A	A	?	120	0									1					20	1.17	N
2631	2	chr1	120352	120367	hom	ref	=	=	=											1						1.17	N
2632	2	chr1	120367	120392	no-call	complex	=	?	?											-254						1.17	N
2633	2	chr1	120392	120451	hom	ref	=	=	=											13						1.17	N
2634	2	chr1	120451	120486	no-call	complex	=	?	?											-114						1.17	N
2635	2	chr1	120486	120493	hom	ref	=	=	=											14						1.17	N
2636	2	chr1	120493	120549	no-call	complex	=	?	?											-146						1.17	N
2637	2	chr1	120549	120611	hom	ref	=	=	=											15						1.17	N
2638	2	chr1	120611	120641	no-call	complex	=	?	?											-46						1.17	N
2639	2	chr1	120641	120663	hom	ref	=	=	=											18						1.17	N
2640	2	chr1	120663	120675	no-call	complex	CTTAAAAGTTTT	CTTANAAGTTTT?	?	0	0									-8					20	1.17	N
2641	2	chr1	120675	120685	hom	ref	=	=	=											17						1.17	N
2642	2	chr1	120685	120722	no-call	complex	=	?	?											-94						1.17	N
2643	2	chr1	120722	120729	hom	ref	=	=	=											20						1.17	N
2644	2	chr1	120729	120744	no-call	complex	=	?	?											-1						1.17	N
2645	2	chr1	120744	120774	hom	ref	=	=	=											11						1.17	N
2646	2	chr1	120774	120798	no-call	complex	=	?	?											-8						1.17	N
2647	2	chr1	120798	120810	hom	ref	=	=	=											13						1.17	N
2648	2	chr1	120810	120830	no-call	complex	=	?	?											-30						1.17	N
2649	2	chr1	120830	120843	hom	ref	=	=	=											11						1.17	N
2650	2	chr1	120843	120853	half	ref	TTTCTGAATG	TTTCTGAATG	?	26	0	1115	1116							8					20	1.17	N
2651	2	chr1	120853	120857	hom	ref	=	=	=											8						1.17	N
2652	2	chr1	120857	120858	half	ref	A	A	N	119	119	1115	1116							9					20	1.17	N
2653	2	chr1	120858	120876	hom	ref	=	=	=											9						1.17	N
2654	2	chr1	120876	120914	no-call	complex	=	?	?											-22						1.17	N
2655	2	chr1	120914	120929	hom	ref	=	=	=											13						1.17	N
2656	2	chr1	120929	120947	no-call	complex	CAGCTAGAAAAAAATTAA	CAGCTAGAAAAAAA?TAA	?	0	0									-6					20	1.17	N
2657	2	chr1	120947	120957	hom	ref	=	=	=											10						1.17	N
2658	2	chr1	120957	121200	no-call	complex	=	?	?											-100						1.17	N
2659	2	chr1	121200	121208	hom	ref	=	=	=											19						1.17	N
2660	2	chr1	121208	121215	half	ref	TGACCAT	TGACCAT	?	22	0	1117	1118							-2					21	1.17	N
2661	2	chr1	121215	121219	hom	ref	=	=	=											11						1.17	N
2662	2	chr1	121219	121220	half	ref	C	C	?	71	0	1117	1118							11					21	1.17	N
2663	2	chr1	121220	121223	hom	ref	=	=	=											8						1.17	N
2664	2	chr1	121223	121227	half	ref	AATT	AATT	?	26	0	1117	1118							-16					21	1.17	N
2665	2	chr1	121227	121232	hom	ref	=	=	=											9						1.17	N
2666	2	chr1	121232	121235	half	ref	ACT	ACT	NCN	25	54	1117	1118							9					21	1.17	N
2667	2	chr1	121235	121254	hom	ref	=	=	=											14						1.17	N
2668	2	chr1	121254	121533	no-call	complex	=	?	?											-121						1.17	N
2669	2	chr1	121533	121538	hom	ref	=	=	=											13						1.17	N
2670	2	chr1	121538	121582	no-call	complex	=	?	?											-88						1.17	N
2671	2	chr1	121582	121601	hom	ref	=	=	=											18						1.17	N
2672	2	chr1	121601	121620	no-call	complex	=	?	?											-122						1.17	N
2673	2	chr1	121620	121635	hom	ref	=	=	=											16						1.17	N
2674	2	chr1	121635	121745	no-call	complex	=	?	?											-74						1.17	N
2675	2	chr1	121745	121750	hom	ref	=	=	=											10						1.17	N
2676	2	chr1	121750	121789	no-call	complex	=	?	?											-70						1.17	N
2677	2	chr1	121789	121801	hom	ref	=	=	=											14						1.17	N
2678	2	chr1	121801	121836	no-call	complex	=	?	?											-13						1.17	N
2679	2	chr1	121836	121861	hom	ref	=	=	=											11						1.17	N
2680	2	chr1	121861	121888	no-call	complex	=	?	?											-124						1.17	N
2681	2	chr1	121888	121907	hom	ref	=	=	=											12						1.17	N
2682	2	chr1	121907	121950	no-call	complex	=	?	?											-314						1.17	N
2683	2	chr1	121950	121957	hom	ref	=	=	=											15						1.17	N
2684	2	chr1	121957	122008	no-call	complex	=	?	?											-35						1.17	N
2685	2	chr1	122008	122016	hom	ref	=	=	=											11						1.17	N
2686	2	chr1	122016	122049	no-call	complex	=	?	?											-14						1.17	N
2687	2	chr1	122049	122066	hom	ref	=	=	=											14						1.17	N
2688	2	chr1	122066	122108	no-call	complex	=	?	?											-74						1.17	N
2689	2	chr1	122108	122182	hom	ref	=	=	=											12						1.17	N
2690	2	chr1	122182	122195	no-call	complex	=	?	?											-89						1.17	N
2691	2	chr1	122195	122220	hom	ref	=	=	=											11						1.17	N
2692	2	chr1	122220	122243	no-call	complex	=	?	?											-56						1.17	N
2693	2	chr1	122243	122275	hom	ref	=	=	=											7						1.17	N
2694	2	chr1	122275	122278	half	ref	AGA	AGA	NNN	35	121	1133	1134							2					21	1.17	N
2695	2	chr1	122278	122281	hom	ref	=	=	=											2						1.17	N
2696	2	chr1	122281	122282	half	ref	A	A	N	121	121	1133	1134							4					21	1.17	N
2697	2	chr1	122282	122379	hom	ref	=	=	=											-3						1.17	N
2698	2	chr1	122379	122425	no-call	complex	=	?	?											-108						1.17	N
2699	2	chr1	122425	122447	hom	ref	=	=	=											-12						1.17	N
2700	2	chr1	122447	122448	half	ref	A	A	N	41	120	1137	1138							-12					21	1.17	N
2701	2	chr1	122448	122466	hom	ref	=	=	=											-30						1.17	N
2702	2	chr1	122466	122466	half	ref			?	30	0	1137	1138							-30					21	1.17	N
2703	2	chr1	122466	122526	hom	ref	=	=	=											-30						1.17	N
2704	2	chr1	122526	122552	no-call	complex	=	?	?											-329						1.17	N
2705	2	chr1	122552	122584	hom	ref	=	=	=											15						1.17	N
2706	2	chr1	122584	122614	no-call	complex	=	?	?											-1						1.17	N
2707	2	chr1	122614	122621	hom	ref	=	=	=											31						1.17	N
2708	2	chr1	122621	122675	no-call	complex	=	?	?											-293						1.17	N
2709	2	chr1	122675	122687	hom	ref	=	=	=											16						1.17	N
2710	2	chr1	122687	122725	no-call	complex	=	?	?											-32						1.17	N
2711	2	chr1	122725	122744	hom	ref	=	=	=											16						1.17	N
2712	2	chr1	122744	122781	no-call	complex	=	?	?											-94						1.17	N
2713	2	chr1	122781	122810	hom	ref	=	=	=											-22						1.17	N
2714	2	chr1	122810	122810	half	ref			?	23	0	1147	1148							17					20	1.17	N
2715	2	chr1	122810	122812	hom	ref	=	=	=											8						1.17	N
2716	2	chr1	122812	122813	half	ref	T	T	N	37	120	1147	1148							8					20	1.17	N
2717	2	chr1	122813	122868	hom	ref	=	=	=											8						1.17	N
2718	2	chr1	122868	122893	no-call	complex	=	?	?											-89						1.17	N
2719	2	chr1	122893	122908	hom	ref	=	=	=											16						1.17	N
2720	2	chr1	122908	122915	no-call	complex	=	?	?											-270						1.17	N
2721	2	chr1	122915	122928	hom	ref	=	=	=											16						1.17	N
2722	2	chr1	122928	122982	no-call	complex	=	?	?											-75						1.17	N
2723	2	chr1	122982	122994	hom	ref	=	=	=											17						1.17	N
2724	2	chr1	122994	123028	no-call	complex	=	?	?											-25						1.17	N
2725	2	chr1	123028	123033	hom	ref	=	=	=											26						1.17	N
2726	2	chr1	123033	123069	no-call	complex	=	?	?											-11						1.17	N
2727	2	chr1	123069	123084	hom	ref	=	=	=											10						1.17	N
2728	2	chr1	123084	123180	no-call	complex	=	?	?											-31						1.17	N
2729	2	chr1	123180	123197	hom	ref	=	=	=											15						1.17	N
2730	2	chr1	123197	123229	no-call	complex	=	?	?											-11						1.17	N
2731	2	chr1	123229	123274	hom	ref	=	=	=											13						1.17	N
2732	2	chr1	123274	123316	no-call	complex	=	?	?											-96						1.17	N
2733	2	chr1	123316	123328	hom	ref	=	=	=											12						1.17	N
2734	2	chr1	123328	123335	half	ref	ATGTAAA	ATGTAAA	?	50	0									9					19	1.17	N
2735	2	chr1	123335	123375	hom	ref	=	=	=											11						1.17	N
2736	2	chr1	123375	123382	half	ref	TATGAGA	TATGAGA	?	29	0									8					20	1.17	N
2737	2	chr1	123382	123389	hom	ref	=	=	=											13						1.17	N
2738	2	chr1	123389	123445	no-call	complex	=	?	?											-17						1.17	N
2739	2	chr1	123445	123454	hom	ref	=	=	=											28						1.17	N
2740	2	chr1	123454	123484	no-call	complex	=	?	?											-58						1.17	N
2741	2	chr1	123484	123505	hom	ref	=	=	=											34						1.17	N
2742	2	chr1	123505	123514	no-call	complex	=	?	?											-298						1.17	N
2743	2	chr1	123514	123531	hom	ref	=	=	=											24						1.17	N
2744	2	chr1	123531	123561	no-call	complex	=	?	?											-20						1.17	N
2745	2	chr1	123561	123632	hom	ref	=	=	=											8						1.17	N
2746	2	chr1	123632	123647	no-call	complex	=	?	?											-261						1.17	N
2747	2	chr1	123647	123706	hom	ref	=	=	=											10						1.17	N
2748	2	chr1	123706	123752	no-call	complex	=	?	?											-96						1.17	N
2749	2	chr1	123752	123846	hom	ref	=	=	=											10						1.17	N
2750	2	chr1	123846	123868	no-call	complex	=	?	?											-20						1.17	N
2751	2	chr1	123868	123885	hom	ref	=	=	=											23						1.17	N
2752	2	chr1	123885	123931	no-call	complex	=	?	?											-5						1.17	N
2753	2	chr1	123931	123938	hom	ref	=	=	=											11						1.17	N
2754	2	chr1	123938	123957	no-call	complex	=	?	?											-84						1.17	N
2755	2	chr1	123957	124000	hom	ref	=	=	=											14						1.17	N
2756	2	chr1	124000	124021	no-call	complex	=	?	?											-19						1.17	N
2757	2	chr1	124021	124051	hom	ref	=	=	=											13						1.17	N
2758	2	chr1	124051	124074	no-call	complex	=	?	?											-29						1.17	N
2759	2	chr1	124074	124105	hom	ref	=	=	=											10						1.17	N
2760	2	chr1	124105	124132	no-call	complex	=	?	?											-26						1.17	N
2761	2	chr1	124132	124138	hom	ref	=	=	=											12						1.17	N
2762	2	chr1	124138	124237	no-call	complex	=	?	?											-41						1.17	N
2763	2	chr1	124237	124265	hom	ref	=	=	=											11						1.17	N
2764	2	chr1	124265	124306	no-call	complex	=	?	?											-15						1.17	N
2765	2	chr1	124306	124316	hom	ref	=	=	=											15						1.17	N
2766	2	chr1	124316	124347	no-call	complex	=	?	?											-52						1.17	N
2767	2	chr1	124347	124356	hom	ref	=	=	=											14						1.17	N
2768	2	chr1	124356	124393	no-call	complex	=	?	?											-79						1.17	N
2769	2	chr1	124393	124411	hom	ref	=	=	=											23						1.17	N
2770	2	chr1	124411	124434	no-call	complex	=	?	?											-50						1.17	N
2771	2	chr1	124434	124453	hom	ref	=	=	=											15						1.17	N
2772	2	chr1	124453	124462	no-call	complex	=	?	?											-266						1.17	N
2773	2	chr1	124462	124494	hom	ref	=	=	=											14						1.17	N
2774	2	chr1	124494	124537	no-call	complex	=	?	?											-23						1.17	N
2775	2	chr1	124537	124544	hom	ref	=	=	=											10						1.17	N
2776	2	chr1	124544	124590	no-call	complex	=	?	?											-93						1.17	N
2777	2	chr1	124590	124606	hom	ref	=	=	=											16						1.17	N
2778	2	chr1	124606	124619	no-call	complex	=	?	?											-12						1.17	N
2779	2	chr1	124619	124657	hom	ref	=	=	=											-3						1.17	N
2780	2	chr1	124657	124658	half	ref	G	G	N	59	130									-3				AluJb:Alu:18.1	22	1.17	N
2781	2	chr1	124658	124670	hom	ref	=	=	=											-3						1.17	N
2782	2	chr1	124670	124714	no-call	complex	=	?	?											-151						1.17	N
2783	2	chr1	124714	124725	hom	ref	=	=	=											14						1.17	N
2784	2	chr1	124725	124762	no-call	complex	=	?	?											-7						1.17	N
2785	2	chr1	124762	124775	hom	ref	=	=	=											13						1.17	N
2786	2	chr1	124775	124812	no-call	complex	=	?	?											-4						1.17	N
2787	2	chr1	124812	124838	hom	ref	=	=	=											13						1.17	N
2788	2	chr1	124838	124874	no-call	complex	=	?	?											-34						1.17	N
2789	2	chr1	124874	124990	hom	ref	=	=	=											-9						1.17	N
2790	2	chr1	124990	125018	no-call	complex	=	?	?											-35						1.17	N
2791	2	chr1	125018	125039	hom	ref	=	=	=											10						1.17	N
2792	2	chr1	125039	125049	no-call	complex	=	?	?											-5						1.17	N
2793	2	chr1	125049	125093	hom	ref	=	=	=											-3						1.17	N
2794	2	chr1	125093	125094	half	ref	C	C	N	22	120									-3					22	1.17	N
2795	2	chr1	125094	125114	hom	ref	=	=	=											-8						1.17	N
2796	2	chr1	125114	125147	no-call	complex	=	?	?											-47						1.17	N
2797	2	chr1	125147	125164	hom	ref	=	=	=											14						1.17	N
2798	2	chr1	125164	125210	no-call	complex	=	?	?											-79						1.17	N
2799	2	chr1	125210	125221	hom	ref	=	=	=											17						1.17	N
2800	2	chr1	125221	125228	no-call	complex	=	?	?											-41						1.17	N
2801	2	chr1	125228	125238	hom	ref	=	=	=											13						1.17	N
2802	2	chr1	125238	125276	no-call	complex	=	?	?											-67						1.17	N
2803	2	chr1	125276	125337	hom	ref	=	=	=											7						1.17	N
2804	2	chr1	125337	125361	no-call	complex	=	?	?											-7						1.17	N
2805	2	chr1	125361	125429	hom	ref	=	=	=											5						1.17	N
2806	2	chr1	125429	125430	half	ref	T	T	N	120	120									5					20	1.17	N
2807	2	chr1	125430	125458	hom	ref	=	=	=											5						1.17	N
2808	2	chr1	125458	125498	no-call	complex	=	?	?											-72						1.17	N
2809	2	chr1	125498	125507	hom	ref	=	=	=											12						1.17	N
2810	2	chr1	125507	125555	no-call	complex	=	?	?											-48						1.17	N
2811	2	chr1	125555	125567	hom	ref	=	=	=											5						1.17	N
2812	2	chr1	125567	125567	half	ref			?	32	0	1191	1192							5					20	1.17	N
2813	2	chr1	125567	125570	hom	ref	=	=	=											5						1.17	N
2814	2	chr1	125570	125576	no-call	complex	TTATTT	TT?ATTT	?	0	0	1191	1192							0					20	1.17	N
2815	2	chr1	125576	125579	hom	ref	=	=	=											0						1.17	N
2816	2	chr1	125579	125580	half	ref	T	T	N	55	55	1191	1192							0					20	1.17	N
2817	2	chr1	125580	125592	hom	ref	=	=	=											0						1.17	N
2818	2	chr1	125592	125620	no-call	complex	=	?	?											-12						1.17	N
2819	2	chr1	125620	125652	hom	ref	=	=	=											11						1.17	N
2820	2	chr1	125652	125695	no-call	complex	=	?	?											-24						1.17	N
2821	2	chr1	125695	125718	hom	ref	=	=	=											7						1.17	N
2822	2	chr1	125718	125719	half	ref	C	C	N	120	120	1193	1194							7					20	1.17	N
2823	2	chr1	125719	125724	hom	ref	=	=	=											7						1.17	N
2824	2	chr1	125724	125734	half	ref	TTCATACAAG	TTCATACAAG	?	34	0	1193	1194							2					20	1.17	N
2825	2	chr1	125734	125757	hom	ref	=	=	=											-7						1.17	N
2826	2	chr1	125757	125758	half	ref	A	A	N	69	69	1195	1196							-7					20	1.17	N
2827	2	chr1	125758	125762	hom	ref	=	=	=											-7						1.17	N
2828	2	chr1	125762	125763	half	ref	A	A	N	69	69	1195	1196							-7					20	1.17	N
2829	2	chr1	125763	125770	hom	ref	=	=	=											-7						1.17	N
2830	2	chr1	125770	125778	half	ref	TTATTGAA	TTATTGAA	?	45	0	1195	1196							13					20	1.17	N
2831	2	chr1	125778	125782	hom	ref	=	=	=											-12						1.17	N
2832	2	chr1	125782	125783	half	ref	T	T	N	22	69	1195	1196							-12					20	1.17	N
2833	2	chr1	125783	125786	hom	ref	=	=	=											-12						1.17	N
2834	2	chr1	125786	125789	half	ref	AGA	AGA	?	22	0	1195	1196							0					20	1.17	N
2835	2	chr1	125789	125798	hom	ref	=	=	=											14						1.17	N
2836	2	chr1	125798	125867	no-call	complex	=	?	?											-37						1.17	N
2837	2	chr1	125867	125873	hom	ref	=	=	=											22						1.17	N
2838	2	chr1	125873	125909	no-call	complex	=	?	?											-32						1.17	N
2839	2	chr1	125909	125940	hom	ref	=	=	=											11						1.17	N
2840	2	chr1	125940	126071	no-call	complex	=	?	?											-138						1.17	N
2841	2	chr1	126071	126097	hom	ref	=	=	=											12						1.17	N
2842	2	chr1	126097	126123	no-call	complex	=	?	?											-66						1.17	N
2843	2	chr1	126123	126141	hom	ref	=	=	=											17						1.17	N
2844	2	chr1	126141	126145	half	ref	CCTT	CCTT	?	34	0	1201	1202							-3				L1MA5:L1:20.3	20	1.17	N
2845	2	chr1	126145	126154	hom	ref	=	=	=											-3						1.17	N
2846	2	chr1	126154	126155	half	ref	C	C	N	27	124	1201	1202							11				L1MA5:L1:20.3	20	1.17	N
2847	2	chr1	126155	126158	hom	ref	=	=	=											5						1.17	N
2848	2	chr1	126158	126159	half	ref	G	G	N	31	124	1201	1202							5				L1MA5:L1:20.3	20	1.17	N
2849	2	chr1	126159	126205	hom	ref	=	=	=											5						1.17	N
2850	2	chr1	126205	126222	no-call	complex	TACAATTATTTGTCTCA	TACAAT?TTTGTCTC?A	?	0	0	1203	1204							-2				L1MA5:L1:20.3	20	1.17	N
2851	2	chr1	126222	126228	hom	ref	=	=	=											3						1.17	N
2852	2	chr1	126228	126235	half	ref	AACAAAA	AACAAAA	?	23	0	1203	1204							-6				L1MA5:L1:20.3	23	1.17	N
2853	2	chr1	126235	126257	hom	ref	=	=	=											10						1.17	N
2854	2	chr1	126257	126285	no-call	complex	=	?	?											-127						1.17	N
2855	2	chr1	126285	126313	hom	ref	=	=	=											12						1.17	N
2856	2	chr1	126313	126372	no-call	complex	=	?	?											-125						1.17	N
2857	2	chr1	126372	126392	hom	ref	=	=	=											12						1.17	N
2858	2	chr1	126392	126479	no-call	complex	=	?	?											-40						1.17	N
2859	2	chr1	126479	126484	hom	ref	=	=	=											16						1.17	N
2860	2	chr1	126484	126538	no-call	complex	=	?	?											-20						1.17	N
2861	2	chr1	126538	126554	hom	ref	=	=	=											-6						1.17	N
2862	2	chr1	126554	126556	half	ref	AT	AT	NN	28	115									-6				L1M4c:L1:28.4	24	1.17	N
2863	2	chr1	126556	126594	hom	ref	=	=	=											1						1.17	N
2864	2	chr1	126594	126595	half	ref	T	T	N	32	77	1211	1212							3				L1M4c:L1:28.4	24	1.17	N
2865	2	chr1	126595	126604	hom	ref	=	=	=											-5						1.17	N
2866	2	chr1	126604	126604	half	ref			?	24	0	1211	1212							-5				L1M4c:L1:28.4	24	1.17	N
2867	2	chr1	126604	126621	hom	ref	=	=	=											-22						1.17	N
2868	2	chr1	126621	126622	half	ref	T	T	N	27	77	1211	1212							-22				L1M4c:L1:28.4	24	1.17	N
2869	2	chr1	126622	126641	hom	ref	=	=	=											-22						1.17	N
2870	2	chr1	126641	126685	no-call	complex	=	?	?											-2						1.17	N
2871	2	chr1	126685	126690	hom	ref	=	=	=											14						1.17	N
2872	2	chr1	126690	126715	no-call	complex	=	?	?											-3						1.17	N
2873	2	chr1	126715	126742	hom	ref	=	=	=											11						1.17	N
2874	2	chr1	126742	126743	half	ref	A	A	N	37	122	1217	1218							14				L1M4c:L1:28.4	24	1.17	N
2875	2	chr1	126743	126751	hom	ref	=	=	=											-3						1.17	N
2876	2	chr1	126751	126752	half	ref	C	C	N	31	122	1217	1218							-3				L1M4c:L1:28.4	24	1.17	N
2877	2	chr1	126752	126770	hom	ref	=	=	=											-3						1.17	N
2878	2	chr1	126770	126770	half	ref			?	20	0									-2				L1M4c:L1:28.4	24	1.17	N
2879	2	chr1	126770	126782	hom	ref	=	=	=											-2						1.17	N
2880	2	chr1	126782	126790	no-call	complex	ATATATAG	ATNTATAG?	?	0	0									-20				L1M4c:L1:28.4	24	1.17	N
2881	2	chr1	126790	126802	hom	ref	=	=	=											4						1.17	N
2882	2	chr1	126802	126826	no-call	complex	=	?	?											-15						1.17	N
2883	2	chr1	126826	126837	hom	ref	=	=	=											10						1.17	N
2884	2	chr1	126837	126875	no-call	complex	=	?	?											-83						1.17	N
2885	2	chr1	126875	126882	hom	ref	=	=	=											14						1.17	N
2886	2	chr1	126882	126924	no-call	complex	=	?	?											-90						1.17	N
2887	2	chr1	126924	126938	hom	ref	=	=	=											9						1.17	N
2888	2	chr1	126938	126940	half	ref	AA	AA	?	55	0	1225	1226							9				L1M4c:L1:28.4	24	1.17	N
2889	2	chr1	126940	126951	hom	ref	=	=	=											5						1.17	N
2890	2	chr1	126951	126951	half	ref			?	21	0	1225	1226							5				L1M4c:L1:28.4	24	1.17	N
2891	2	chr1	126951	126969	hom	ref	=	=	=											1						1.17	N
2892	2	chr1	126969	126970	half	ref	T	T	?	55	0	1225	1226							1				L1M4c:L1:28.4	24	1.17	N
2893	2	chr1	126970	126977	hom	ref	=	=	=											10						1.17	N
2894	2	chr1	126977	126977	half	ref			?	36	0	1227	1228							10				L1M4c:L1:28.4	24	1.17	N
2895	2	chr1	126977	126980	hom	ref	=	=	=											8						1.17	N
2896	2	chr1	126980	126981	half	ref	T	T	N	35	120	1227	1228							8				L1M4c:L1:28.4	24	1.17	N
2897	2	chr1	126981	126996	hom	ref	=	=	=											8						1.17	N
2898	2	chr1	126996	127000	no-call	complex	TGGC	TGGN	?	59	0									6				L1M4c:L1:28.4	24	1.17	N
2899	2	chr1	127000	127017	hom	ref	=	=	=											6						1.17	N
2900	2	chr1	127017	127058	no-call	complex	=	?	?											-15						1.17	N
2901	2	chr1	127058	127063	hom	ref	=	=	=											18						1.17	N
2902	2	chr1	127063	127124	no-call	complex	=	?	?											-34						1.17	N
2903	2	chr1	127124	127129	hom	ref	=	=	=											18						1.17	N
2904	2	chr1	127129	127156	no-call	complex	=	?	?											-4						1.17	N
2905	2	chr1	127156	127185	hom	ref	=	=	=											3						1.17	N
2906	2	chr1	127185	127186	half	ref	G	G	N	46	120									3					24	1.17	N
2907	2	chr1	127186	127207	hom	ref	=	=	=											3						1.17	N
2908	2	chr1	127207	127243	no-call	complex	=	?	?											-39						1.17	N
2909	2	chr1	127243	127261	hom	ref	=	=	=											25						1.17	N
2910	2	chr1	127261	127288	no-call	complex	=	?	?											-13						1.17	N
2911	2	chr1	127288	127294	hom	ref	=	=	=											11						1.17	N
2912	2	chr1	127294	127358	no-call	complex	=	?	?											-19						1.17	N
2913	2	chr1	127358	127379	hom	ref	=	=	=											10						1.17	N
2914	2	chr1	127379	127395	no-call	complex	=	?	?											-109						1.17	N
2915	2	chr1	127395	127518	hom	ref	=	=	=											5						1.17	N
2916	2	chr1	127518	127519	half	ref	T	T	N	125	125									6					24	1.17	N
2917	2	chr1	127519	127560	hom	ref	=	=	=											6						1.17	N
2918	2	chr1	127560	127640	no-call	complex	=	?	?											-22						1.17	N
2919	2	chr1	127640	127652	hom	ref	=	=	=											12						1.17	N
2920	2	chr1	127652	127726	no-call	complex	=	?	?											-75						1.17	N
2921	2	chr1	127726	127731	hom	ref	=	=	=											22						1.17	N
2922	2	chr1	127731	127754	no-call	complex	=	?	?											-91						1.17	N
2923	2	chr1	127754	127769	hom	ref	=	=	=											16						1.17	N
2924	2	chr1	127769	127801	no-call	complex	=	?	?											-15						1.17	N
2925	2	chr1	127801	127850	hom	ref	=	=	=											13						1.17	N
2926	2	chr1	127850	127895	no-call	complex	=	?	?											-90						1.17	N
2927	2	chr1	127895	127904	hom	ref	=	=	=											14						1.17	N
2928	2	chr1	127904	127945	no-call	complex	=	?	?											-191						1.17	N
2929	2	chr1	127945	127952	hom	ref	=	=	=											14						1.17	N
2930	2	chr1	127952	127976	no-call	complex	=	?	?											-20						1.17	N
2931	2	chr1	127976	127993	hom	ref	=	=	=											11						1.17	N
2932	2	chr1	127993	127998	half	ref	CATCT	CATCT	NNNCN	33	68									7				AluSz:Alu:13.0	24	1.17	N
2933	2	chr1	127998	128043	hom	ref	=	=	=											3						1.17	N
2934	2	chr1	128043	128074	no-call	complex	=	?	?											6						1.17	N
2935	2	chr1	128074	128138	hom	ref	=	=	=											2						1.17	N
2936	2	chr1	128138	128139	half	ref	T	T	N	63	120									2					24	1.17	N
2937	2	chr1	128139	128225	hom	ref	=	=	=											2						1.17	N
2938	2	chr1	128225	128273	no-call	complex	=	?	?											-49						1.17	N
2939	2	chr1	128273	128292	hom	ref	=	=	=											15						1.17	N
2940	2	chr1	128292	128299	no-call	complex	=	?	?											-88						1.17	N
2941	2	chr1	128299	128320	hom	ref	=	=	=											13						1.17	N
2942	2	chr1	128320	128343	no-call	complex	=	?	?											-39						1.17	N
2943	2	chr1	128343	128401	hom	ref	=	=	=											-6						1.17	N
2944	2	chr1	128401	128402	half	ref	A	A	N	125	125									-6					24	1.17	N
2945	2	chr1	128402	128422	hom	ref	=	=	=											-6						1.17	N
2946	2	chr1	128422	128463	no-call	complex	=	?	?											-16						1.17	N
2947	2	chr1	128463	128531	hom	ref	=	=	=											-14						1.17	N
2948	2	chr1	128531	128567	no-call	complex	=	?	?											-9						1.17	N
2949	2	chr1	128567	128591	hom	ref	=	=	=											13						1.17	N
2950	2	chr1	128591	128621	no-call	complex	=	?	?											-8						1.17	N
2951	2	chr1	128621	128681	hom	ref	=	=	=											19						1.17	N
2952	2	chr1	128681	128713	no-call	complex	=	?	?											7						1.17	N
2953	2	chr1	128713	128765	hom	ref	=	=	=											11						1.17	N
2954	2	chr1	128765	128828	no-call	complex	=	?	?											-24						1.17	N
2955	2	chr1	128828	128851	hom	ref	=	=	=											3						1.17	N
2956	2	chr1	128851	128852	half	ref	C	C	N	25	120	1261	1262							3	100287060:XR_078212.1:LOC100287060::::UTR:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::UTR:UNKNOWN-INC		AluSq2:Alu:12.1	24	1.17	N
2957	2	chr1	128852	128854	hom	ref	=	=	=											3						1.17	N
2958	2	chr1	128854	128855	half	ref	A	A	N	120	120	1261	1262							-35	100287060:XR_078212.1:LOC100287060::::UTR:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::UTR:UNKNOWN-INC		AluSq2:Alu:12.1	24	1.17	N
2959	2	chr1	128855	128879	hom	ref	=	=	=											-35						1.17	N
2960	2	chr1	128879	128893	no-call	complex	=	?	?											-152						1.17	N
2961	2	chr1	128893	128978	hom	ref	=	=	=											3						1.17	N
2962	2	chr1	128978	129022	no-call	complex	=	?	?											-91						1.17	N
2963	2	chr1	129022	129059	hom	ref	=	=	=											23						1.17	N
2964	2	chr1	129059	129098	no-call	complex	=	?	?											-17						1.17	N
2965	2	chr1	129098	129108	hom	ref	=	=	=											14						1.17	N
2966	2	chr1	129108	129167	no-call	complex	=	?	?											-58						1.17	N
2967	2	chr1	129167	129211	hom	ref	=	=	=											-21						1.17	N
2968	2	chr1	129211	129212	no-call	complex	C	N	N	121	121									-21	100287060:XR_078212.1:LOC100287060::::UTR:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::UTR:UNKNOWN-INC			24	1.17	N
2969	2	chr1	129212	129217	hom	ref	=	=	=											-21						1.17	N
2970	2	chr1	129217	129218	half	ref	C	C	N	121	121									5	100287060:XR_078212.1:LOC100287060::::UTR:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::UTR:UNKNOWN-INC			24	1.17	N
2971	2	chr1	129218	129281	hom	ref	=	=	=											0						1.17	N
2972	2	chr1	129281	129308	no-call	complex	=	?	?											-265						1.17	N
2973	2	chr1	129308	129325	hom	ref	=	=	=											17						1.17	N
2974	2	chr1	129325	129359	no-call	complex	=	?	?											-6						1.17	N
2975	2	chr1	129359	129374	hom	ref	=	=	=											16						1.17	N
2976	2	chr1	129374	129413	no-call	complex	=	?	?											-42						1.17	N
2977	2	chr1	129413	129443	hom	ref	=	=	=											6						1.17	N
2978	2	chr1	129443	129444	half	ref	A	A	N	121	121									6	100287060:XR_078212.1:LOC100287060::::INTRON:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::INTRON:UNKNOWN-INC		AluSx:Alu:17.4	23	1.17	N
2979	2	chr1	129444	129473	hom	ref	=	=	=											6						1.17	N
2980	2	chr1	129473	129492	no-call	complex	=	?	?											-60						1.17	N
2981	2	chr1	129492	129542	hom	ref	=	=	=											-1						1.17	N
2982	2	chr1	129542	129543	half	ref	C	C	N	27	115									-1	100287060:XR_078212.1:LOC100287060::::INTRON:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::INTRON:UNKNOWN-INC		AluSx:Alu:17.4	23	1.17	N
2983	2	chr1	129543	129581	hom	ref	=	=	=											-1						1.17	N
2984	2	chr1	129581	129582	half	ref	T	T	?	58	0									8	100287060:XR_078212.1:LOC100287060::::INTRON:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::INTRON:UNKNOWN-INC		AluSx:Alu:17.4	23	1.17	N
2985	2	chr1	129582	129605	hom	ref	=	=	=											-1						1.17	N
2986	2	chr1	129605	129635	no-call	complex	=	?	?											-11						1.17	N
2987	2	chr1	129635	129673	hom	ref	=	=	=											-1						1.17	N
2988	2	chr1	129673	129685	half	ref	AGACTTTTTTTT	AGACTTTTTTTT	?	28	0									1	100287060:XR_078212.1:LOC100287060::::INTRON:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::INTRON:UNKNOWN-INC		AluSx:Alu:17.4;FLAM_C:Alu:14.4	23	1.17	N
2989	2	chr1	129685	129743	hom	ref	=	=	=											0						1.17	N
2990	2	chr1	129743	129744	half	ref	A	A	N	115	115	1269	1270							5	100287060:XR_078212.1:LOC100287060::::INTRON:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::INTRON:UNKNOWN-INC		FLAM_C:Alu:14.4	22	1.17	N
2991	2	chr1	129744	129748	hom	ref	=	=	=											6						1.17	N
2992	2	chr1	129748	129757	half	ref	AAGTGATCC	AAGTGATCC	?	21	0	1269	1270							-5	100287060:XR_078212.1:LOC100287060::::INTRON:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::INTRON:UNKNOWN-INC		FLAM_C:Alu:14.4	22	1.17	N
2993	2	chr1	129757	129770	hom	ref	=	=	=											-5						1.17	N
2994	2	chr1	129770	129775	half	ref	TCCCA	TCCCA	NNCNN	23	30	1271	1272							3	100287060:XR_078212.1:LOC100287060::::INTRON:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::INTRON:UNKNOWN-INC		FLAM_C:Alu:14.4	22	1.17	N
2995	2	chr1	129775	129782	hom	ref	=	=	=											4						1.17	N
2996	2	chr1	129782	129784	half	ref	GG	GG	?	70	0	1271	1272							5	100287060:XR_078212.1:LOC100287060::::INTRON:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::INTRON:UNKNOWN-INC		FLAM_C:Alu:14.4	22	1.17	N
2997	2	chr1	129784	129821	hom	ref	=	=	=											6						1.17	N
2998	2	chr1	129821	129864	no-call	complex	=	?	?											-26						1.17	N
2999	2	chr1	129864	129873	hom	ref	=	=	=											23						1.17	N
3000	2	chr1	129873	129880	no-call	complex	=	?	?											-100	100287060:XR_078212.1:LOC100287060::::INTRON:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::INTRON:UNKNOWN-INC				1.17	N
3001	2	chr1	129880	129933	hom	ref	=	=	=											15						1.17	N
3002	2	chr1	129933	129985	no-call	complex	=	?	?											-139						1.17	N
3003	2	chr1	129985	130034	hom	ref	=	=	=											11						1.17	N
3004	2	chr1	130034	130080	no-call	complex	=	?	?											-52						1.17	N
3005	2	chr1	130080	130112	hom	ref	=	=	=											16						1.17	N
3006	2	chr1	130112	130139	no-call	complex	=	?	?											-19						1.17	N
3007	2	chr1	130139	130147	hom	ref	=	=	=											21						1.17	N
3008	2	chr1	130147	130181	no-call	complex	=	?	?											-61						1.17	N
3009	2	chr1	130181	130190	hom	ref	=	=	=											17						1.17	N
3010	2	chr1	130190	130234	no-call	complex	=	?	?											-66						1.17	N
3011	2	chr1	130234	130256	hom	ref	=	=	=											1						1.17	N
3012	2	chr1	130256	130256	half	ref			?	26	0									27	100287060:XR_078212.1:LOC100287060::::INTRON:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::INTRON:UNKNOWN-INC		AluSg:Alu:14.9	21	1.17	N
3013	2	chr1	130256	130276	hom	ref	=	=	=											9						1.17	N
3014	2	chr1	130276	130326	no-call	complex	=	?	?											-87						1.17	N
3015	2	chr1	130326	130386	hom	ref	=	=	=											6						1.17	N
3016	2	chr1	130386	130405	no-call	complex	=	?	?											-101						1.17	N
3017	2	chr1	130405	130419	hom	ref	=	=	=											16						1.17	N
3018	2	chr1	130419	130449	no-call	complex	=	?	?											-5						1.17	N
3019	2	chr1	130449	130483	hom	ref	=	=	=											4						1.17	N
3020	2	chr1	130483	130484	half	ref	C	C	N	51	120									4	100287060:XR_078212.1:LOC100287060::::INTRON:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::INTRON:UNKNOWN-INC		L1M2:L1:49.5	23	1.17	N
3021	2	chr1	130484	130513	hom	ref	=	=	=											-20						1.17	N
3022	2	chr1	130513	130514	half	ref	T	T	N	79	79									-20	100287060:XR_078212.1:LOC100287060::::INTRON:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::INTRON:UNKNOWN-INC		L1M2:L1:49.5	23	1.17	N
3023	2	chr1	130514	130581	hom	ref	=	=	=											-20						1.17	N
3024	2	chr1	130581	130604	no-call	complex	=	?	?											-116						1.17	N
3025	2	chr1	130604	130741	hom	ref	=	=	=											-15						1.17	N
3026	2	chr1	130741	130790	no-call	complex	=	?	?											-102						1.17	N
3027	2	chr1	130790	130797	hom	ref	=	=	=											14						1.17	N
3028	2	chr1	130797	130829	no-call	complex	=	?	?											-10						1.17	N
3029	2	chr1	130829	130864	hom	ref	=	=	=											12						1.17	N
3030	2	chr1	130864	130890	no-call	complex	=	?	?											-22						1.17	N
3031	2	chr1	130890	130895	hom	ref	=	=	=											17						1.17	N
3032	2	chr1	130895	130927	no-call	complex	=	?	?											1						1.17	N
3033	2	chr1	130927	130951	hom	ref	=	=	=											12						1.17	N
3034	2	chr1	130951	130996	no-call	complex	=	?	?											-161						1.17	N
3035	2	chr1	130996	131033	hom	ref	=	=	=											10						1.17	N
3036	2	chr1	131033	131083	no-call	complex	=	?	?											-178						1.17	N
3037	2	chr1	131083	131098	hom	ref	=	=	=											10						1.17	N
3038	2	chr1	131098	131162	no-call	complex	=	?	?											-230						1.17	N
3039	2	chr1	131162	131183	hom	ref	=	=	=											13						1.17	N
3040	2	chr1	131183	131206	no-call	complex	=	?	?											-57						1.17	N
3041	2	chr1	131206	131217	hom	ref	=	=	=											23						1.17	N
3042	2	chr1	131217	131250	no-call	complex	=	?	?											-57						1.17	N
3043	2	chr1	131250	131273	hom	ref	=	=	=											11						1.17	N
3044	2	chr1	131273	131295	no-call	complex	=	?	?											-52						1.17	N
3045	2	chr1	131295	131300	hom	ref	=	=	=											11						1.17	N
3046	2	chr1	131300	131354	no-call	complex	=	?	?											-24						1.17	N
3047	2	chr1	131354	131360	hom	ref	=	=	=											17						1.17	N
3048	2	chr1	131360	131402	no-call	complex	=	?	?											-3						1.17	N
3049	2	chr1	131402	131417	hom	ref	=	=	=											12						1.17	N
3050	2	chr1	131417	131427	no-call	complex	=	?	?											-47						1.17	N
3051	2	chr1	131427	131451	hom	ref	=	=	=											10						1.17	N
3052	2	chr1	131451	131509	no-call	complex	=	?	?											-82						1.17	N
3053	2	chr1	131509	131545	hom	ref	=	=	=											10						1.17	N
3054	2	chr1	131545	131554	no-call	complex	=	?	?											-58	100287060:XR_078212.1:LOC100287060::::INTRON:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::INTRON:UNKNOWN-INC				1.17	N
3055	2	chr1	131554	131588	hom	ref	=	=	=											12						1.17	N
3056	2	chr1	131588	131621	no-call	complex	=	?	?											-15						1.17	N
3057	2	chr1	131621	131633	hom	ref	=	=	=											13						1.17	N
3058	2	chr1	131633	131678	no-call	complex	=	?	?											-45						1.17	N
3059	2	chr1	131678	131683	hom	ref	=	=	=											11						1.17	N
3060	2	chr1	131683	131802	no-call	complex	=	?	?											-41						1.17	N
3061	2	chr1	131802	131824	hom	ref	=	=	=											10						1.17	N
3062	2	chr1	131824	131852	no-call	complex	=	?	?											-33						1.17	N
3063	2	chr1	131852	131863	hom	ref	=	=	=											10						1.17	N
3064	2	chr1	131863	131931	no-call	complex	=	?	?											-128						1.17	N
3065	2	chr1	131931	131946	hom	ref	=	=	=											17						1.17	N
3066	2	chr1	131946	131973	no-call	complex	=	?	?											-147						1.17	N
3067	2	chr1	131973	132022	hom	ref	=	=	=											8						1.17	N
3068	2	chr1	132022	132044	no-call	complex	=	?	?											-15						1.17	N
3069	2	chr1	132044	132050	hom	ref	=	=	=											10						1.17	N
3070	2	chr1	132050	132074	no-call	complex	=	?	?											-57						1.17	N
3071	2	chr1	132074	132079	hom	ref	=	=	=											11						1.17	N
3072	2	chr1	132079	132123	no-call	complex	=	?	?											-37						1.17	N
3073	2	chr1	132123	132134	hom	ref	=	=	=											10						1.17	N
3074	2	chr1	132134	132141	no-call	complex	=	?	?											-82	100287060:XR_078212.1:LOC100287060::::INTRON:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::INTRON:UNKNOWN-INC				1.17	N
3075	2	chr1	132141	132152	hom	ref	=	=	=											11						1.17	N
3076	2	chr1	132152	132186	no-call	complex	=	?	?											-165						1.17	N
3077	2	chr1	132186	132212	hom	ref	=	=	=											12						1.17	N
3078	2	chr1	132212	132219	no-call	complex	=	?	?											-9	100287060:XR_078212.1:LOC100287060::::INTRON:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::INTRON:UNKNOWN-INC				1.17	N
3079	2	chr1	132219	132225	hom	ref	=	=	=											12						1.17	N
3080	2	chr1	132225	132308	no-call	complex	=	?	?											-30						1.17	N
3081	2	chr1	132308	132350	hom	ref	=	=	=											-15						1.17	N
3082	2	chr1	132350	132351	half	ref	A	A	N	40	120									-15	100287060:XR_078212.1:LOC100287060::::INTRON:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::INTRON:UNKNOWN-INC			27	1.17	N
3083	2	chr1	132351	132406	hom	ref	=	=	=											-15						1.17	N
3084	2	chr1	132406	132460	no-call	complex	=	?	?											-125						1.17	N
3085	2	chr1	132460	132468	hom	ref	=	=	=											11						1.17	N
3086	2	chr1	132468	132497	no-call	complex	=	?	?											-44						1.17	N
3087	2	chr1	132497	132506	hom	ref	=	=	=											13						1.17	N
3088	2	chr1	132506	132565	no-call	complex	=	?	?											-32						1.17	N
3089	2	chr1	132565	132576	hom	ref	=	=	=											13						1.17	N
3090	2	chr1	132576	132610	no-call	complex	=	?	?											-43						1.17	N
3091	2	chr1	132610	132624	hom	ref	=	=	=											-31						1.17	N
3092	2	chr1	132624	132624	half	ref			?	24	0									26	100287060:XR_078212.1:LOC100287060::::INTRON:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::INTRON:UNKNOWN-INC			27	1.17	N
3093	2	chr1	132624	132643	hom	ref	=	=	=											10						1.17	N
3094	2	chr1	132643	132688	no-call	complex	=	?	?											-58						1.17	N
3095	2	chr1	132688	132699	hom	ref	=	=	=											10						1.17	N
3096	2	chr1	132699	132700	half	ref	G	G	N	120	120	1339	1340							-9	100287060:XR_078212.1:LOC100287060::::INTRON:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::INTRON:UNKNOWN-INC			27	1.17	N
3097	2	chr1	132700	132703	hom	ref	=	=	=											-9						1.17	N
3098	2	chr1	132703	132704	half	ref	T	T	N	120	120	1339	1340							6	100287060:XR_078212.1:LOC100287060::::INTRON:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::INTRON:UNKNOWN-INC			27	1.17	N
3099	2	chr1	132704	132719	hom	ref	=	=	=											6						1.17	N
3100	2	chr1	132719	132798	no-call	complex	=	?	?											-82						1.17	N
3101	2	chr1	132798	132810	hom	ref	=	=	=											13						1.17	N
3102	2	chr1	132810	132860	no-call	complex	=	?	?											-59						1.17	N
3103	2	chr1	132860	132868	hom	ref	=	=	=											13						1.17	N
3104	2	chr1	132868	132902	no-call	complex	=	?	?											3						1.17	N
3105	2	chr1	132902	132939	hom	ref	=	=	=											-8						1.17	N
3106	2	chr1	132939	132969	no-call	complex	=	?	?											-10						1.17	N
3107	2	chr1	132969	132977	hom	ref	=	=	=											11						1.17	N
3108	2	chr1	132977	133036	no-call	complex	=	?	?											-131						1.17	N
3109	2	chr1	133036	133052	hom	ref	=	=	=											12						1.17	N
3110	2	chr1	133052	133074	no-call	complex	=	?	?											0						1.17	N
3111	2	chr1	133074	133080	hom	ref	=	=	=											18						1.17	N
3112	2	chr1	133080	133155	no-call	complex	=	?	?											-114						1.17	N
3113	2	chr1	133155	133238	hom	ref	=	=	=											0						1.17	N
3114	2	chr1	133238	133281	no-call	complex	=	?	?											-12						1.17	N
3115	2	chr1	133281	133292	hom	ref	=	=	=											11						1.17	N
3116	2	chr1	133292	133381	no-call	complex	=	?	?											-265						1.17	N
3117	2	chr1	133381	133409	hom	ref	=	=	=											10						1.17	N
3118	2	chr1	133409	133420	no-call	complex	=	?	?											15						1.17	N
3119	2	chr1	133420	133433	hom	ref	=	=	=											23						1.17	N
3120	2	chr1	133433	133486	no-call	complex	=	?	?											-20						1.17	N
3121	2	chr1	133486	133492	hom	ref	=	=	=											20						1.17	N
3122	2	chr1	133492	133536	no-call	complex	=	?	?											-141						1.17	N
3123	2	chr1	133536	133583	hom	ref	=	=	=											-9						1.17	N
3124	2	chr1	133583	133650	no-call	complex	=	?	?											-19						1.17	N
3125	2	chr1	133650	133658	hom	ref	=	=	=											13						1.17	N
3126	2	chr1	133658	133674	no-call	complex	=	?	?											-85						1.17	N
3127	2	chr1	133674	133702	hom	ref	=	=	=											13						1.17	N
3128	2	chr1	133702	133753	no-call	complex	=	?	?											-88						1.17	N
3129	2	chr1	133753	133811	hom	ref	=	=	=											0						1.17	N
3130	2	chr1	133811	133812	half	ref	T	T	N	85	85	1371	1372							0	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC			27	1.17	N
3131	2	chr1	133812	133838	hom	ref	=	=	=											0						1.17	N
3132	2	chr1	133838	133839	half	ref	T	T	?	85	0	1371	1372							6	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC			27	1.17	N
3133	2	chr1	133839	133855	hom	ref	=	=	=											6						1.17	N
3134	2	chr1	133855	133886	no-call	complex	=	?	?											7						1.17	N
3135	2	chr1	133886	133906	hom	ref	=	=	=											11						1.17	N
3136	2	chr1	133906	133913	no-call	complex	=	?	?											-40	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC				1.17	N
3137	2	chr1	133913	133945	hom	ref	=	=	=											15						1.17	N
3138	2	chr1	133945	133963	no-call	complex	=	?	?											-45						1.17	N
3139	2	chr1	133963	133977	hom	ref	=	=	=											16						1.17	N
3140	2	chr1	133977	134025	no-call	complex	=	?	?											-86						1.17	N
3141	2	chr1	134025	134031	hom	ref	=	=	=											14						1.17	N
3142	2	chr1	134031	134127	no-call	complex	=	?	?											-334						1.17	N
3143	2	chr1	134127	134133	hom	ref	=	=	=											15						1.17	N
3144	2	chr1	134133	134179	no-call	complex	=	?	?											-29						1.17	N
3145	2	chr1	134179	134265	hom	ref	=	=	=											-21						1.17	N
3146	2	chr1	134265	134266	half	ref	G	G	N	106	73									-6	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC		AluSg:Alu:10.7	27	1.17	N
3147	2	chr1	134266	134311	hom	ref	=	=	=											-12						1.17	N
3148	2	chr1	134311	134377	no-call	complex	=	?	?											-110						1.17	N
3149	2	chr1	134377	134394	hom	ref	=	=	=											6						1.17	N
3150	2	chr1	134394	134452	no-call	complex	=	?	?											-72						1.17	N
3151	2	chr1	134452	134458	hom	ref	=	=	=											10						1.17	N
3152	2	chr1	134458	134467	no-call	complex	=	?	?											-115	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC				1.17	N
3153	2	chr1	134467	134477	hom	ref	=	=	=											16						1.17	N
3154	2	chr1	134477	134519	no-call	complex	=	?	?											-22						1.17	N
3155	2	chr1	134519	134548	hom	ref	=	=	=											11						1.17	N
3156	2	chr1	134548	134615	no-call	complex	=	?	?											-156						1.17	N
3157	2	chr1	134615	134632	hom	ref	=	=	=											14						1.17	N
3158	2	chr1	134632	134674	no-call	complex	=	?	?											-48						1.17	N
3159	2	chr1	134674	134701	hom	ref	=	=	=											0						1.17	N
3160	2	chr1	134701	134702	half	ref	A	A	N	31	58	1391	1392							9	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC			27	1.17	N
3161	2	chr1	134702	134710	hom	ref	=	=	=											9						1.17	N
3162	2	chr1	134710	134711	half	ref	A	A	N	29	58	1391	1392							10	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC			27	1.17	N
3163	2	chr1	134711	134718	hom	ref	=	=	=											10						1.17	N
3164	2	chr1	134718	134719	half	ref	T	T	?	37	0	1391	1392							11	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC			27	1.17	N
3165	2	chr1	134719	134739	hom	ref	=	=	=											7						1.17	N
3166	2	chr1	134739	134793	no-call	complex	=	?	?											-124						1.17	N
3167	2	chr1	134793	134804	hom	ref	=	=	=											10						1.17	N
3168	2	chr1	134804	134828	no-call	complex	=	?	?											-12						1.17	N
3169	2	chr1	134828	134834	hom	ref	=	=	=											16						1.17	N
3170	2	chr1	134834	134878	no-call	complex	=	?	?											-22						1.17	N
3171	2	chr1	134878	134933	hom	ref	=	=	=											15						1.17	N
3172	2	chr1	134933	134977	no-call	complex	=	?	?											-70						1.17	N
3173	2	chr1	134977	134995	hom	ref	=	=	=											12						1.17	N
3174	2	chr1	134995	135059	no-call	complex	=	?	?											-8						1.17	N
3175	2	chr1	135059	135084	hom	ref	=	=	=											0						1.17	N
3176	2	chr1	135084	135086	half	ref	CC	CC	?	24	0	1403	1404							3	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC			27	1.17	N
3177	2	chr1	135086	135094	hom	ref	=	=	=											-22						1.17	N
3178	2	chr1	135094	135095	half	ref	C	C	N	30	55	1403	1404							-22	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC			27	1.17	N
3179	2	chr1	135095	135100	hom	ref	=	=	=											-22						1.17	N
3180	2	chr1	135100	135101	half	ref	G	G	N	36	55	1403	1404							7	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC			27	1.17	N
3181	2	chr1	135101	135109	hom	ref	=	=	=											7						1.17	N
3182	2	chr1	135109	135110	half	ref	T	T	N	55	55									11	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC			27	1.17	N
3183	2	chr1	135110	135115	hom	ref	=	=	=											3						1.17	N
3184	2	chr1	135115	135116	half	ref	T	T	N	55	55									9	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC			27	1.17	N
3185	2	chr1	135116	135162	hom	ref	=	=	=											-19						1.17	N
3186	2	chr1	135162	135264	no-call	complex	=	?	?											-214						1.17	N
3187	2	chr1	135264	135291	hom	ref	=	=	=											3						1.17	N
3188	2	chr1	135291	135327	no-call	complex	=	?	?											-26						1.17	N
3189	2	chr1	135327	135371	hom	ref	=	=	=											13						1.17	N
3190	2	chr1	135371	135427	no-call	complex	=	?	?											-125						1.17	N
3191	2	chr1	135427	135448	hom	ref	=	=	=											2						1.17	N
3192	2	chr1	135448	135449	half	ref	A	A	N	121	121									2	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC			23	1.17	N
3193	2	chr1	135449	135483	hom	ref	=	=	=											2						1.17	N
3194	2	chr1	135483	135503	no-call	complex	=	?	?											-95						1.17	N
3195	2	chr1	135503	135535	hom	ref	=	=	=											17						1.17	N
3196	2	chr1	135535	135569	no-call	complex	=	?	?											-206						1.17	N
3197	2	chr1	135569	135603	hom	ref	=	=	=											10						1.17	N
3198	2	chr1	135603	135621	no-call	complex	=	?	?											-150						1.17	N
3199	2	chr1	135621	135659	hom	ref	=	=	=											16						1.17	N
3200	2	chr1	135659	135676	no-call	complex	=	?	?											-339						1.17	N
3201	2	chr1	135676	135719	hom	ref	=	=	=											13						1.17	N
3202	2	chr1	135719	135745	no-call	complex	=	?	?											-124						1.17	N
3203	2	chr1	135745	135773	hom	ref	=	=	=											16						1.17	N
3204	2	chr1	135773	135792	no-call	complex	=	?	?											-21						1.17	N
3205	2	chr1	135792	135799	hom	ref	=	=	=											23						1.17	N
3206	2	chr1	135799	135839	no-call	complex	=	?	?											-56						1.17	N
3207	2	chr1	135839	135965	hom	ref	=	=	=											-1						1.17	N
3208	2	chr1	135965	135995	no-call	complex	=	?	?											-89						1.17	N
3209	2	chr1	135995	136013	hom	ref	=	=	=											12						1.17	N
3210	2	chr1	136013	136032	no-call	complex	=	?	?											-219						1.17	N
3211	2	chr1	136032	136044	hom	ref	=	=	=											19						1.17	N
3212	2	chr1	136044	136075	no-call	complex	=	?	?											-24						1.17	N
3213	2	chr1	136075	136094	hom	ref	=	=	=											15						1.17	N
3214	2	chr1	136094	136103	no-call	complex	=	?	?											4	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::INTRON:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::INTRON:UNKNOWN-INC				1.17	N
3215	2	chr1	136103	136137	hom	ref	=	=	=											12						1.17	N
3216	2	chr1	136137	136176	no-call	complex	=	?	?											-54						1.17	N
3217	2	chr1	136176	136194	hom	ref	=	=	=											15						1.17	N
3218	2	chr1	136194	136214	no-call	complex	=	?	?											-74						1.17	N
3219	2	chr1	136214	136225	hom	ref	=	=	=											10						1.17	N
3220	2	chr1	136225	136560	no-call	complex	=	?	?											-71						1.17	N
3221	2	chr1	136560	136565	hom	ref	=	=	=											11						1.17	N
3222	2	chr1	136565	136587	no-call	complex	=	?	?											-18						1.17	N
3223	2	chr1	136587	136592	hom	ref	=	=	=											12						1.17	N
3224	2	chr1	136592	136720	no-call	complex	=	?	?											-75						1.17	N
3225	2	chr1	136720	136729	hom	ref	=	=	=											13						1.17	N
3226	2	chr1	136729	136974	no-call	complex	=	?	?											-37						1.17	N
3227	2	chr1	136974	136983	hom	ref	=	=	=											10						1.17	N
3228	2	chr1	136983	137440	no-call	complex	=	?	?											-81						1.17	N
3229	2	chr1	137440	137504	hom	ref	=	=	=											-9						1.17	N
3230	2	chr1	137504	137511	no-call	complex	=	?	?											-32	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::INTRON:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::INTRON:UNKNOWN-INC				1.17	N
3231	2	chr1	137511	137532	hom	ref	=	=	=											10						1.17	N
3232	2	chr1	137532	137571	no-call	complex	=	?	?											-59						1.17	N
3233	2	chr1	137571	137577	hom	ref	=	=	=											25						1.17	N
3234	2	chr1	137577	137612	no-call	complex	=	?	?											-216						1.17	N
3235	2	chr1	137612	137624	hom	ref	=	=	=											25						1.17	N
3236	2	chr1	137624	137680	no-call	complex	=	?	?											-10						1.17	N
3237	2	chr1	137680	137694	hom	ref	=	=	=											14						1.17	N
3238	2	chr1	137694	137701	no-call	complex	=	?	?											-43	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC				1.17	N
3239	2	chr1	137701	137714	hom	ref	=	=	=											10						1.17	N
3240	2	chr1	137714	137745	no-call	complex	=	?	?											-49						1.17	N
3241	2	chr1	137745	137761	hom	ref	=	=	=											12						1.17	N
3242	2	chr1	137761	137779	no-call	complex	=	?	?											-51						1.17	N
3243	2	chr1	137779	137864	hom	ref	=	=	=											2						1.17	N
3244	2	chr1	137864	137893	no-call	complex	=	?	?											-18						1.17	N
3245	2	chr1	137893	137903	hom	ref	=	=	=											30						1.17	N
3246	2	chr1	137903	137940	no-call	complex	=	?	?											-95						1.17	N
3247	2	chr1	137940	137949	hom	ref	=	=	=											16						1.17	N
3248	2	chr1	137949	137983	no-call	complex	=	?	?											-2						1.17	N
3249	2	chr1	137983	138063	hom	ref	=	=	=											-2						1.17	N
3250	2	chr1	138063	138064	half	ref	C	C	N	120	120	1441	1442							-2	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::UTR3:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::UTR3:UNKNOWN-INC			12	1.17	N
3251	2	chr1	138064	138079	hom	ref	=	=	=											-2						1.17	N
3252	2	chr1	138079	138080	half	ref	C	C	?	120	0	1441	1442							12	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::UTR3:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::UTR3:UNKNOWN-INC			12	1.17	N
3253	2	chr1	138080	138123	hom	ref	=	=	=											5						1.17	N
3254	2	chr1	138123	138159	no-call	complex	=	?	?											-265						1.17	N
3255	2	chr1	138159	138259	hom	ref	=	=	=											-1						1.17	N
3256	2	chr1	138259	138282	no-call	complex	=	?	?											-164						1.17	N
3257	2	chr1	138282	138295	hom	ref	=	=	=											11						1.17	N
3258	2	chr1	138295	138302	no-call	complex	=	?	?											-99	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::UTR3:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::UTR3:UNKNOWN-INC				1.17	N
3259	2	chr1	138302	138323	hom	ref	=	=	=											14						1.17	N
3260	2	chr1	138323	138359	no-call	complex	=	?	?											-105						1.17	N
3261	2	chr1	138359	138417	hom	ref	=	=	=											-11						1.17	N
3262	2	chr1	138417	138418	half	ref	A	A	N	83	123	1449	1450							-11	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::UTR3:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::UTR3:UNKNOWN-INC			11	1.17	N
3263	2	chr1	138418	138427	hom	ref	=	=	=											-29						1.17	N
3264	2	chr1	138427	138428	half	ref	T	T	N	123	123	1449	1450							-29	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::UTR3:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::UTR3:UNKNOWN-INC			11	1.17	N
3265	2	chr1	138428	138453	hom	ref	=	=	=											-29						1.17	N
3266	2	chr1	138453	138478	no-call	complex	=	?	?											-93						1.17	N
3267	2	chr1	138478	138502	hom	ref	=	=	=											12						1.17	N
3268	2	chr1	138502	138509	no-call	complex	=	?	?											-76	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::UTR3:UNKNOWN-INC	100287060:XR_078212.1:LOC100287060::::TSS-UPSTREAM:UNKNOWN-INC;653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::UTR3:UNKNOWN-INC				1.17	N
3269	2	chr1	138509	138544	hom	ref	=	=	=											12						1.17	N
3270	2	chr1	138544	138577	no-call	complex	=	?	?											-39						1.17	N
3271	2	chr1	138577	138583	hom	ref	=	=	=											10						1.17	N
3272	2	chr1	138583	138625	no-call	complex	=	?	?											-186						1.17	N
3273	2	chr1	138625	138655	hom	ref	=	=	=											11						1.17	N
3274	2	chr1	138655	138662	no-call	complex	=	?	?											-107	653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::CDS:UNKNOWN-VNC	653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::CDS:UNKNOWN-VNC				1.17	N
3275	2	chr1	138662	138677	hom	ref	=	=	=											19						1.17	N
3276	2	chr1	138677	138717	no-call	complex	=	?	?											-40						1.17	N
3277	2	chr1	138717	138750	hom	ref	=	=	=											12						1.17	N
3278	2	chr1	138750	138764	no-call	complex	=	?	?											-26						1.17	N
3279	2	chr1	138764	138812	hom	ref	=	=	=											10						1.17	N
3280	2	chr1	138812	138842	no-call	complex	=	?	?											-30						1.17	N
3281	2	chr1	138842	138851	hom	ref	=	=	=											-12						1.17	N
3282	2	chr1	138851	138852	half	ref	C	C	?	21	0	1461	1462							-12	653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::CDS:NO-CHANGE	653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::CDS:UNKNOWN-VNC			11	1.17	N
3283	2	chr1	138852	138855	hom	ref	=	=	=											-8						1.17	N
3284	2	chr1	138855	138856	half	ref	A	A	?	120	0	1461	1462							-8	653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::CDS:NO-CHANGE	653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::CDS:UNKNOWN-VNC			11	1.17	N
3285	2	chr1	138856	138874	hom	ref	=	=	=											-8						1.17	N
3286	2	chr1	138874	138875	half	ref	G	G	N	120	120	1461	1462							0	653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::CDS:NO-CHANGE	653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::CDS:UNKNOWN-VNC			11	1.17	N
3287	2	chr1	138875	138886	hom	ref	=	=	=											0						1.17	N
3288	2	chr1	138886	138933	no-call	complex	=	?	?											-71						1.17	N
3289	2	chr1	138933	138967	hom	ref	=	=	=											18						1.17	N
3290	2	chr1	138967	138984	no-call	complex	=	?	?											-8						1.17	N
3291	2	chr1	138984	139039	hom	ref	=	=	=											7						1.17	N
3292	2	chr1	139039	139071	no-call	complex	=	?	?											6						1.17	N
3293	2	chr1	139071	139079	hom	ref	=	=	=											12						1.17	N
3294	2	chr1	139079	139129	no-call	complex	=	?	?											-101						1.17	N
3295	2	chr1	139129	139171	hom	ref	=	=	=											12						1.17	N
3296	2	chr1	139171	139239	no-call	complex	=	?	?											-90						1.17	N
3297	2	chr1	139239	139265	hom	ref	=	=	=											8						1.17	N
3298	2	chr1	139265	139266	half	ref	T	T	N	122	122									11	653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::CDS:NO-CHANGE	653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::CDS:UNKNOWN-VNC			11	1.17	N
3299	2	chr1	139266	139302	hom	ref	=	=	=											8						1.17	N
3300	2	chr1	139302	139326	no-call	complex	=	?	?											-150						1.17	N
3301	2	chr1	139326	139403	hom	ref	=	=	=											17						1.17	N
3302	2	chr1	139403	139410	no-call	complex	=	?	?											-29	653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::CDS:UNKNOWN-VNC	653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::CDS:UNKNOWN-VNC				1.17	N
3303	2	chr1	139410	139459	hom	ref	=	=	=											0						1.17	N
3304	2	chr1	139459	139460	half	ref	A	A	N	29	120									0	653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::CDS:NO-CHANGE	653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::CDS:UNKNOWN-VNC			11	1.17	N
3305	2	chr1	139460	139536	hom	ref	=	=	=											0						1.17	N
3306	2	chr1	139536	139543	no-call	complex	=	?	?											-20	653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::CDS:UNKNOWN-VNC	653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::CDS:UNKNOWN-VNC				1.17	N
3307	2	chr1	139543	139557	hom	ref	=	=	=											11						1.17	N
3308	2	chr1	139557	139588	no-call	complex	=	?	?											-27						1.17	N
3309	2	chr1	139588	139654	hom	ref	=	=	=											1						1.17	N
3310	2	chr1	139654	139655	half	ref	G	G	N	46	148									1	653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::CDS:NO-CHANGE	653340:XR_039243.2:LOC653340::::UTR:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::CDS:UNKNOWN-VNC			18	1.17	N
3311	2	chr1	139655	139699	hom	ref	=	=	=											1						1.17	N
3312	2	chr1	139699	139725	no-call	complex	=	?	?											-38						1.17	N
3313	2	chr1	139725	139740	hom	ref	=	=	=											28						1.17	N
3314	2	chr1	139740	139747	no-call	complex	=	?	?											-44	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::INTRON:UNKNOWN-INC	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::INTRON:UNKNOWN-INC				1.17	N
3315	2	chr1	139747	139760	hom	ref	=	=	=											19						1.17	N
3316	2	chr1	139760	139809	no-call	complex	=	?	?											-89						1.17	N
3317	2	chr1	139809	139874	hom	ref	=	=	=											-12						1.17	N
3318	2	chr1	139874	139875	half	ref	T	T	N	49	121									-7	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::INTRON:UNKNOWN-INC	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::INTRON:UNKNOWN-INC		MER1A:hAT-Charlie:22.6	18	1.17	N
3319	2	chr1	139875	139919	hom	ref	=	=	=											-7						1.17	N
3320	2	chr1	139919	139932	no-call	complex	=	?	?											-14						1.17	N
3321	2	chr1	139932	139939	hom	ref	=	=	=											17						1.17	N
3322	2	chr1	139939	140003	no-call	complex	=	?	?											-29						1.17	N
3323	2	chr1	140003	140034	hom	ref	=	=	=											10						1.17	N
3324	2	chr1	140034	140084	no-call	complex	=	?	?											-235						1.17	N
3325	2	chr1	140084	140094	hom	ref	=	=	=											10						1.17	N
3326	2	chr1	140094	140128	no-call	complex	=	?	?											-42						1.17	N
3327	2	chr1	140128	140139	hom	ref	=	=	=											17						1.17	N
3328	2	chr1	140139	140162	no-call	complex	=	?	?											-67						1.17	N
3329	2	chr1	140162	140175	hom	ref	=	=	=											-3						1.17	N
3330	2	chr1	140175	140177	half	ref	CA	CA	NN	31	120									-24	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::UTR5:UNKNOWN-INC	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::UTR5:UNKNOWN-INC			18	1.17	N
3331	2	chr1	140177	140300	hom	ref	=	=	=											-24						1.17	N
3332	2	chr1	140300	140346	no-call	complex	=	?	?											-15						1.17	N
3333	2	chr1	140346	140365	hom	ref	=	=	=											14						1.17	N
3334	2	chr1	140365	140372	no-call	complex	=	?	?											-42	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::INTRON:UNKNOWN-INC	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::INTRON:UNKNOWN-INC				1.17	N
3335	2	chr1	140372	140427	hom	ref	=	=	=											19						1.17	N
3336	2	chr1	140427	140472	no-call	complex	=	?	?											-145						1.17	N
3337	2	chr1	140472	140496	hom	ref	=	=	=											17						1.17	N
3338	2	chr1	140496	140539	no-call	complex	=	?	?											-249						1.17	N
3339	2	chr1	140539	140561	hom	ref	=	=	=											22						1.17	N
3340	2	chr1	140561	140583	no-call	complex	=	?	?											-153						1.17	N
3341	2	chr1	140583	140637	hom	ref	=	=	=											10						1.17	N
3342	2	chr1	140637	140644	no-call	complex	=	?	?											-5	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::INTRON:UNKNOWN-INC	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::INTRON:UNKNOWN-INC				1.17	N
3343	2	chr1	140644	140702	hom	ref	=	=	=											21						1.17	N
3344	2	chr1	140702	140715	no-call	complex	=	?	?											-80						1.17	N
3345	2	chr1	140715	140751	hom	ref	=	=	=											14						1.17	N
3346	2	chr1	140751	140800	no-call	complex	=	?	?											-94						1.17	N
3347	2	chr1	140800	140814	hom	ref	=	=	=											11						1.17	N
3348	2	chr1	140814	140857	no-call	complex	=	?	?											-130						1.17	N
3349	2	chr1	140857	140914	hom	ref	=	=	=											-1						1.17	N
3350	2	chr1	140914	140950	no-call	complex	=	?	?											-144						1.17	N
3351	2	chr1	140950	141028	hom	ref	=	=	=											-35						1.17	N
3352	2	chr1	141028	141065	no-call	complex	=	?	?											1						1.17	N
3353	2	chr1	141065	141175	hom	ref	=	=	=											4						1.17	N
3354	2	chr1	141175	141176	half	ref	A	A	N	110	110									5	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::INTRON:UNKNOWN-INC	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::INTRON:UNKNOWN-INC		MER21C:ERVL:31.5	21	1.17	N
3355	2	chr1	141176	141194	hom	ref	=	=	=											5						1.17	N
3356	2	chr1	141194	141198	half	ref	AGGG	AGGG	?	63	0	1491	1492							7	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::INTRON:UNKNOWN-INC	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::INTRON:UNKNOWN-INC		MER21C:ERVL:31.5	21	1.17	N
3357	2	chr1	141198	141221	hom	ref	=	=	=											5						1.17	N
3358	2	chr1	141221	141222	half	ref	G	G	N	44	120	1491	1492							17	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::INTRON:UNKNOWN-INC	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::INTRON:UNKNOWN-INC		MER21C:ERVL:31.5	21	1.17	N
3359	2	chr1	141222	141224	hom	ref	=	=	=											1						1.17	N
3360	2	chr1	141224	141225	half	ref	G	G	N	120	120	1491	1492							1	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::INTRON:UNKNOWN-INC	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::INTRON:UNKNOWN-INC		MER21C:ERVL:31.5	21	1.17	N
3361	2	chr1	141225	141256	hom	ref	=	=	=											1						1.17	N
3362	2	chr1	141256	141299	no-call	complex	=	?	?											-13						1.17	N
3363	2	chr1	141299	141320	hom	ref	=	=	=											11						1.17	N
3364	2	chr1	141320	141362	no-call	complex	=	?	?											-8						1.17	N
3365	2	chr1	141362	141371	hom	ref	=	=	=											10						1.17	N
3366	2	chr1	141371	141407	no-call	complex	=	?	?											-73						1.17	N
3367	2	chr1	141407	141445	hom	ref	=	=	=											16						1.17	N
3368	2	chr1	141445	141484	no-call	complex	=	?	?											-238						1.17	N
3369	2	chr1	141484	141515	hom	ref	=	=	=											18						1.17	N
3370	2	chr1	141515	141559	no-call	complex	=	?	?											-33						1.17	N
3371	2	chr1	141559	141610	hom	ref	=	=	=											6						1.17	N
3372	2	chr1	141610	141660	no-call	complex	=	?	?											-82						1.17	N
3373	2	chr1	141660	141687	hom	ref	=	=	=											12						1.17	N
3374	2	chr1	141687	141729	no-call	complex	=	?	?											-40						1.17	N
3375	2	chr1	141729	141743	hom	ref	=	=	=											15						1.17	N
3376	2	chr1	141743	141769	no-call	complex	=	?	?											-33						1.17	N
3377	2	chr1	141769	141777	hom	ref	=	=	=											10						1.17	N
3378	2	chr1	141777	141797	no-call	complex	=	?	?											-64						1.17	N
3379	2	chr1	141797	141932	hom	ref	=	=	=											6						1.17	N
3380	2	chr1	141932	141933	half	ref	A	A	N	24	69									7	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::INTRON:UNKNOWN-INC	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::INTRON:UNKNOWN-INC		AluJr:Alu:20.4	21	1.17	N
3381	2	chr1	141933	141950	hom	ref	=	=	=											7						1.17	N
3382	2	chr1	141950	141985	no-call	complex	=	?	?											-2						1.17	N
3383	2	chr1	141985	142003	hom	ref	=	=	=											11						1.17	N
3384	2	chr1	142003	142044	no-call	complex	=	?	?											-57						1.17	N
3385	2	chr1	142044	142075	hom	ref	=	=	=											22						1.17	N
3386	2	chr1	142075	142089	no-call	complex	=	?	?											-4						1.17	N
3387	2	chr1	142089	142111	hom	ref	=	=	=											13						1.17	N
3388	2	chr1	142111	142130	no-call	complex	=	?	?											-8						1.17	N
3389	2	chr1	142130	142191	hom	ref	=	=	=											-4						1.17	N
3390	2	chr1	142191	142206	no-call	complex	=	?	?											-78						1.17	N
3391	2	chr1	142206	142211	hom	ref	=	=	=											15						1.17	N
3392	2	chr1	142211	142263	no-call	complex	=	?	?											-33						1.17	N
3393	2	chr1	142263	142327	hom	ref	=	=	=											6						1.17	N
3394	2	chr1	142327	142327	half	ref			?	26	0	1511	1512							18	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::INTRON:UNKNOWN-INC	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::INTRON:UNKNOWN-INC		MIRb:MIR:44.9	21	1.17	N
3395	2	chr1	142327	142329	hom	ref	=	=	=											18						1.17	N
3396	2	chr1	142329	142329	half	ref			?	32	0	1511	1512							24	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::INTRON:UNKNOWN-INC	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::INTRON:UNKNOWN-INC		MIRb:MIR:44.9	21	1.17	N
3397	2	chr1	142329	142355	hom	ref	=	=	=											5						1.17	N
3398	2	chr1	142355	142405	no-call	complex	=	?	?											-25						1.17	N
3399	2	chr1	142405	142487	hom	ref	=	=	=											-59						1.17	N
3400	2	chr1	142487	142509	no-call	complex	=	?	?											-41						1.17	N
3401	2	chr1	142509	142564	hom	ref	=	=	=											-19						1.17	N
3402	2	chr1	142564	142565	half	ref	A	A	N	121	121									-19	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::INTRON:UNKNOWN-INC	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::INTRON:UNKNOWN-INC			21	1.17	N
3403	2	chr1	142565	142587	hom	ref	=	=	=											-5						1.17	N
3404	2	chr1	142587	142625	no-call	complex	=	?	?											-19						1.17	N
3405	2	chr1	142625	142674	hom	ref	=	=	=											-4						1.17	N
3406	2	chr1	142674	142697	no-call	complex	=	?	?											-24						1.17	N
3407	2	chr1	142697	142715	hom	ref	=	=	=											10						1.17	N
3408	2	chr1	142715	142756	no-call	complex	=	?	?											-60						1.17	N
3409	2	chr1	142756	142770	hom	ref	=	=	=											11						1.17	N
3410	2	chr1	142770	142799	no-call	complex	=	?	?											-87						1.17	N
3411	2	chr1	142799	142909	hom	ref	=	=	=											-7						1.17	N
3412	2	chr1	142909	142927	no-call	complex	=	?	?											-59						1.17	N
3413	2	chr1	142927	143004	hom	ref	=	=	=											-25						1.17	N
3414	2	chr1	143004	143005	half	ref	G	G	N	113	113									-25	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::INTRON:UNKNOWN-INC	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::INTRON:UNKNOWN-INC			21	1.17	N
3415	2	chr1	143005	143151	hom	ref	=	=	=											-32						1.17	N
3416	2	chr1	143151	143190	no-call	complex	=	?	?											-44						1.17	N
3417	2	chr1	143190	143265	hom	ref	=	=	=											-1						1.17	N
3418	2	chr1	143265	143304	no-call	complex	=	?	?											-42						1.17	N
3419	2	chr1	143304	143317	hom	ref	=	=	=											20						1.17	N
3420	2	chr1	143317	143357	no-call	complex	=	?	?											-20						1.17	N
3421	2	chr1	143357	143390	hom	ref	=	=	=											23						1.17	N
3422	2	chr1	143390	143417	no-call	complex	=	?	?											-109						1.17	N
3423	2	chr1	143417	143518	hom	ref	=	=	=											10						1.17	N
3424	2	chr1	143518	143568	no-call	complex	=	?	?											-29						1.17	N
3425	2	chr1	143568	143576	hom	ref	=	=	=											28						1.17	N
3426	2	chr1	143576	143616	no-call	complex	=	?	?											-81						1.17	N
3427	2	chr1	143616	143629	hom	ref	=	=	=											20						1.17	N
3428	2	chr1	143629	143661	no-call	complex	=	?	?											-20						1.17	N
3429	2	chr1	143661	143729	hom	ref	=	=	=											5						1.17	N
3430	2	chr1	143729	143770	no-call	complex	=	?	?											-29						1.17	N
3431	2	chr1	143770	143797	hom	ref	=	=	=											12						1.17	N
3432	2	chr1	143797	143815	no-call	complex	=	?	?											-37						1.17	N
3433	2	chr1	143815	143824	hom	ref	=	=	=											5						1.17	N
3434	2	chr1	143824	143825	half	ref	T	T	N	57	120	1537	1538							5	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::INTRON:UNKNOWN-INC	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::INTRON:UNKNOWN-INC		MER1A:hAT-Charlie:13.6	20	1.17	N
3435	2	chr1	143825	143837	hom	ref	=	=	=											0						1.17	N
3436	2	chr1	143837	143838	half	ref	C	C	N	120	120	1537	1538							0	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::INTRON:UNKNOWN-INC	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::INTRON:UNKNOWN-INC		MER1A:hAT-Charlie:13.6	20	1.17	N
3437	2	chr1	143838	143842	hom	ref	=	=	=											0						1.17	N
3438	2	chr1	143842	143843	half	ref	G	G	N	41	120	1537	1538							2	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::INTRON:UNKNOWN-INC	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::INTRON:UNKNOWN-INC		MER1A:hAT-Charlie:13.6	20	1.17	N
3439	2	chr1	143843	143848	hom	ref	=	=	=											2						1.17	N
3440	2	chr1	143848	143849	half	ref	T	T	?	120	0	1537	1538							8	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::INTRON:UNKNOWN-INC	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::INTRON:UNKNOWN-INC		MER1A:hAT-Charlie:13.6	20	1.17	N
3441	2	chr1	143849	143855	hom	ref	=	=	=											-1						1.17	N
3442	2	chr1	143855	143856	half	ref	C	C	N	120	120	1537	1538							-1	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::INTRON:UNKNOWN-INC	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::INTRON:UNKNOWN-INC		MER1A:hAT-Charlie:13.6	20	1.17	N
3443	2	chr1	143856	143878	hom	ref	=	=	=											-1						1.17	N
3444	2	chr1	143878	143888	no-call	complex	=	?	?											-62						1.17	N
3445	2	chr1	143888	143905	hom	ref	=	=	=											10						1.17	N
3446	2	chr1	143905	143954	no-call	complex	=	?	?											-86						1.17	N
3447	2	chr1	143954	143964	hom	ref	=	=	=											17						1.17	N
3448	2	chr1	143964	143982	no-call	complex	=	?	?											-8						1.17	N
3449	2	chr1	143982	144014	hom	ref	=	=	=											15						1.17	N
3450	2	chr1	144014	144061	no-call	complex	=	?	?											-78						1.17	N
3451	2	chr1	144061	144070	hom	ref	=	=	=											13						1.17	N
3452	2	chr1	144070	144115	no-call	complex	=	?	?											-32						1.17	N
3453	2	chr1	144115	144143	hom	ref	=	=	=											-6						1.17	N
3454	2	chr1	144143	144144	half	ref	G	G	N	43	137									-6	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::UTR5:UNKNOWN-INC	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::UTR5:UNKNOWN-INC			20	1.17	N
3455	2	chr1	144144	144180	hom	ref	=	=	=											-6						1.17	N
3456	2	chr1	144180	144201	no-call	complex	=	?	?											-71						1.17	N
3457	2	chr1	144201	144220	hom	ref	=	=	=											-11						1.17	N
3458	2	chr1	144220	144220	half	ref			?	21	0	1545	1546							-11	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::UTR5:UNKNOWN-INC	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::UTR5:UNKNOWN-INC		LTR41:ERVL:35.6	20	1.17	N
3459	2	chr1	144220	144222	hom	ref	=	=	=											-11						1.17	N
3460	2	chr1	144222	144223	half	ref	T	T	N	120	120	1545	1546							17	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::UTR5:UNKNOWN-INC	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::UTR5:UNKNOWN-INC		LTR41:ERVL:35.6	20	1.17	N
3461	2	chr1	144223	144264	hom	ref	=	=	=											8						1.17	N
3462	2	chr1	144264	144265	half	ref	A	A	N	50	50	1547	1548							11	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::UTR5:UNKNOWN-INC	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::UTR5:UNKNOWN-INC		AluJb:Alu:16.1	20	1.17	N
3463	2	chr1	144265	144268	hom	ref	=	=	=											11						1.17	N
3464	2	chr1	144268	144283	half	ref	CTGGGAGGCCAAGGT	CTGGGAGGCCAAGGT	?	22	0	1547	1548							-9	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::UTR5:UNKNOWN-INC	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::UTR5:UNKNOWN-INC		AluJb:Alu:16.1	20	1.17	N
3465	2	chr1	144283	144293	hom	ref	=	=	=											-9						1.17	N
3466	2	chr1	144293	144295	half	ref	CT	CT	?	50	0	1549	1550							-9	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::UTR5:UNKNOWN-INC	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::UTR5:UNKNOWN-INC		AluJb:Alu:16.1	20	1.17	N
3467	2	chr1	144295	144298	hom	ref	=	=	=											8						1.17	N
3468	2	chr1	144298	144299	half	ref	A	A	?	30	0	1549	1550							9	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::UTR5:UNKNOWN-INC	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::UTR5:UNKNOWN-INC		AluJb:Alu:16.1	20	1.17	N
3469	2	chr1	144299	144308	hom	ref	=	=	=											9						1.17	N
3470	2	chr1	144308	144368	no-call	complex	=	?	?											-47						1.17	N
3471	2	chr1	144368	144377	hom	ref	=	=	=											6						1.17	N
3472	2	chr1	144377	144378	half	ref	G	G	?	120	0									6	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::TSS-UPSTREAM:UNKNOWN-INC	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::TSS-UPSTREAM:UNKNOWN-INC		AluJb:Alu:16.1	20	1.17	N
3473	2	chr1	144378	144412	hom	ref	=	=	=											6						1.17	N
3474	2	chr1	144412	144415	half	ref	CTG	CTG	?	78	0	1553	1554							9	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::TSS-UPSTREAM:UNKNOWN-INC	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::TSS-UPSTREAM:UNKNOWN-INC		AluJb:Alu:16.1	20	1.17	N
3475	2	chr1	144415	144419	hom	ref	=	=	=											-25						1.17	N
3476	2	chr1	144419	144434	half	ref	AGGAGAATTGCTTGA	AGGAGAATTGCTTGA	?	24	0	1553	1554							-4	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::TSS-UPSTREAM:UNKNOWN-INC	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::TSS-UPSTREAM:UNKNOWN-INC		AluJb:Alu:16.1	20	1.17	N
3477	2	chr1	144434	144447	hom	ref	=	=	=											5						1.17	N
3478	2	chr1	144447	144463	no-call	complex	=	?	?											-8						1.17	N
3479	2	chr1	144463	144515	hom	ref	=	=	=											22						1.17	N
3480	2	chr1	144515	144605	no-call	complex	=	?	?											-57						1.17	N
3481	2	chr1	144605	144628	hom	ref	=	=	=											-3						1.17	N
3482	2	chr1	144628	144628	half	ref			?	21	0									23	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::TSS-UPSTREAM:UNKNOWN-INC	653340:XR_039243.2:LOC653340::::TSS-UPSTREAM:UNKNOWN-INC;729737:XM_001133863.2:LOC729737::::TSS-UPSTREAM:UNKNOWN-INC		AluSp:Alu:10.2	20	1.17	N
3483	2	chr1	144628	144641	hom	ref	=	=	=											13						1.17	N
3484	2	chr1	144641	144691	no-call	complex	=	?	?											-50						1.17	N
3485	2	chr1	144691	144701	hom	ref	=	=	=											15						1.17	N
3486	2	chr1	144701	144913	no-call	complex	=	?	?											-38						1.17	N
3487	2	chr1	144913	144971	hom	ref	=	=	=											11						1.17	N
3488	2	chr1	144971	144978	no-call	complex	=	?	?											-57	729737:XM_001133863.2:LOC729737::::TSS-UPSTREAM:UNKNOWN-INC	729737:XM_001133863.2:LOC729737::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
3489	2	chr1	144978	145044	hom	ref	=	=	=											-18						1.17	N
3490	2	chr1	145044	145051	no-call	complex	=	?	?											-67	729737:XM_001133863.2:LOC729737::::TSS-UPSTREAM:UNKNOWN-INC	729737:XM_001133863.2:LOC729737::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
3491	2	chr1	145051	145115	hom	ref	=	=	=											14						1.17	N
3492	2	chr1	145115	145165	no-call	complex	=	?	?											-7						1.17	N
3493	2	chr1	145165	145181	hom	ref	=	=	=											14						1.17	N
3494	2	chr1	145181	145184	half	ref	AGA	AGA	?	37	0									1	729737:XM_001133863.2:LOC729737::::TSS-UPSTREAM:UNKNOWN-INC	729737:XM_001133863.2:LOC729737::::TSS-UPSTREAM:UNKNOWN-INC		AluJr:Alu:19.5	20	1.17	N
3495	2	chr1	145184	145201	hom	ref	=	=	=											13						1.17	N
3496	2	chr1	145201	145259	no-call	complex	=	?	?											-79						1.17	N
3497	2	chr1	145259	145295	hom	ref	=	=	=											-38						1.17	N
3498	2	chr1	145295	145296	half	ref	T	T	N	56	120									-12	729737:XM_001133863.2:LOC729737::::TSS-UPSTREAM:UNKNOWN-INC	729737:XM_001133863.2:LOC729737::::TSS-UPSTREAM:UNKNOWN-INC			20	1.17	N
3499	2	chr1	145296	145356	hom	ref	=	=	=											-12						1.17	N
3500	2	chr1	145356	145378	no-call	complex	=	?	?											-88						1.17	N
3501	2	chr1	145378	145429	hom	ref	=	=	=											11						1.17	N
3502	2	chr1	145429	145472	no-call	complex	=	?	?											-40						1.17	N
3503	2	chr1	145472	145484	hom	ref	=	=	=											16						1.17	N
3504	2	chr1	145484	145514	no-call	complex	=	?	?											-56						1.17	N
3505	2	chr1	145514	145549	hom	ref	=	=	=											0						1.17	N
3506	2	chr1	145549	145550	half	ref	T	T	N	35	93									0	729737:XM_001133863.2:LOC729737::::TSS-UPSTREAM:UNKNOWN-INC	729737:XM_001133863.2:LOC729737::::TSS-UPSTREAM:UNKNOWN-INC			20	1.17	N
3507	2	chr1	145550	145645	hom	ref	=	=	=											-17						1.17	N
3508	2	chr1	145645	145652	half	ref	TGCAAGG	TGCAAGG	?	37	0	1565	1566							-8	729737:XM_001133863.2:LOC729737::::TSS-UPSTREAM:UNKNOWN-INC	729737:XM_001133863.2:LOC729737::::TSS-UPSTREAM:UNKNOWN-INC			20	1.17	N
3509	2	chr1	145652	145660	hom	ref	=	=	=											-8						1.17	N
3510	2	chr1	145660	145661	half	ref	C	C	?	120	0	1565	1566							10	729737:XM_001133863.2:LOC729737::::TSS-UPSTREAM:UNKNOWN-INC	729737:XM_001133863.2:LOC729737::::TSS-UPSTREAM:UNKNOWN-INC		L2b:L2:43.7	20	1.17	N
3511	2	chr1	145661	145676	hom	ref	=	=	=											-4						1.17	N
3512	2	chr1	145676	145712	no-call	complex	=	?	?											-80						1.17	N
3513	2	chr1	145712	145718	hom	ref	=	=	=											15						1.17	N
3514	2	chr1	145718	145752	no-call	complex	=	?	?											-81						1.17	N
3515	2	chr1	145752	145857	hom	ref	=	=	=											-20						1.17	N
3516	2	chr1	145857	145858	half	ref	T	T	N	36	66	1571	1572							14	729737:XM_001133863.2:LOC729737::::TSS-UPSTREAM:UNKNOWN-INC	729737:XM_001133863.2:LOC729737::::TSS-UPSTREAM:UNKNOWN-INC		L2b:L2:43.7	20	1.17	N
3517	2	chr1	145858	145861	hom	ref	=	=	=											9						1.17	N
3518	2	chr1	145861	145862	half	ref	A	A	N	66	66	1571	1572							13	729737:XM_001133863.2:LOC729737::::TSS-UPSTREAM:UNKNOWN-INC	729737:XM_001133863.2:LOC729737::::TSS-UPSTREAM:UNKNOWN-INC		L2b:L2:43.7	20	1.17	N
3519	2	chr1	145862	145871	hom	ref	=	=	=											11						1.17	N
3520	2	chr1	145871	145874	half	ref	TAT	TAT	?	25	0	1571	1572							-8	729737:XM_001133863.2:LOC729737::::TSS-UPSTREAM:UNKNOWN-INC	729737:XM_001133863.2:LOC729737::::TSS-UPSTREAM:UNKNOWN-INC		L2b:L2:43.7	20	1.17	N
3521	2	chr1	145874	145903	hom	ref	=	=	=											1						1.17	N
3522	2	chr1	145903	145947	no-call	complex	=	?	?											-121						1.17	N
3523	2	chr1	145947	145997	hom	ref	=	=	=											7						1.17	N
3524	2	chr1	145997	146032	no-call	complex	=	?	?											-188						1.17	N
3525	2	chr1	146032	146048	hom	ref	=	=	=											16						1.17	N
3526	2	chr1	146048	146088	no-call	complex	=	?	?											-25						1.17	N
3527	2	chr1	146088	146110	hom	ref	=	=	=											16						1.17	N
3528	2	chr1	146110	146117	no-call	complex	=	?	?											-66	729737:XM_001133863.2:LOC729737::::TSS-UPSTREAM:UNKNOWN-INC	729737:XM_001133863.2:LOC729737::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
3529	2	chr1	146117	146165	hom	ref	=	=	=											12						1.17	N
3530	2	chr1	146165	146210	no-call	complex	=	?	?											-43						1.17	N
3531	2	chr1	146210	146221	hom	ref	=	=	=											16						1.17	N
3532	2	chr1	146221	146229	no-call	complex	=	?	?											-72	729737:XM_001133863.2:LOC729737::::TSS-UPSTREAM:UNKNOWN-INC	729737:XM_001133863.2:LOC729737::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
3533	2	chr1	146229	146307	hom	ref	=	=	=											-25						1.17	N
3534	2	chr1	146307	146354	no-call	complex	=	?	?											-10						1.17	N
3535	2	chr1	146354	146389	hom	ref	=	=	=											21						1.17	N
3536	2	chr1	146389	146396	no-call	complex	=	?	?											-1	729737:XM_001133863.2:LOC729737::::TSS-UPSTREAM:UNKNOWN-INC	729737:XM_001133863.2:LOC729737::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
3537	2	chr1	146396	146503	hom	ref	=	=	=											6						1.17	N
3538	2	chr1	146503	146526	no-call	complex	=	?	?											-35						1.17	N
3539	2	chr1	146526	146536	hom	ref	=	=	=											16						1.17	N
3540	2	chr1	146536	146564	no-call	complex	=	?	?											-65						1.17	N
3541	2	chr1	146564	146580	hom	ref	=	=	=											11						1.17	N
3542	2	chr1	146580	146607	no-call	complex	=	?	?											-31						1.17	N
3543	2	chr1	146607	146865	hom	ref	=	=	=											-7						1.17	N
3544	2	chr1	146865	146900	no-call	complex	=	?	?											-20						1.17	N
3545	2	chr1	146900	146923	hom	ref	=	=	=											15						1.17	N
3546	2	chr1	146923	146930	no-call	complex	=	?	?											-38	729737:XM_001133863.2:LOC729737::::TSS-UPSTREAM:UNKNOWN-INC	729737:XM_001133863.2:LOC729737::::TSS-UPSTREAM:UNKNOWN-INC				1.17	N
3547	2	chr1	146930	146956	hom	ref	=	=	=											19						1.17	N
3548	2	chr1	146956	147003	no-call	complex	=	?	?											-50						1.17	N
3549	2	chr1	147003	147033	hom	ref	=	=	=											-7						1.17	N
3550	2	chr1	147033	147105	no-call	complex	=	?	?											-97						1.17	N
3551	2	chr1	147105	147128	hom	ref	=	=	=											30						1.17	N
3552	2	chr1	147128	147141	no-call	complex	=	?	?											-297						1.17	N
3553	2	chr1	147141	147285	hom	ref	=	=	=											-33						1.17	N
3554	2	chr1	147285	147323	no-call	complex	=	?	?											-44						1.17	N
3555	2	chr1	147323	147332	hom	ref	=	=	=											19						1.17	N
3556	2	chr1	147332	147351	no-call	complex	=	?	?											-195						1.17	N
3557	2	chr1	147351	147400	hom	ref	=	=	=											-16						1.17	N
3558	2	chr1	147400	147401	half	ref	T	T	N	121	121									-16	729737:XM_001133863.2:LOC729737::::TSS-UPSTREAM:UNKNOWN-INC	729737:XM_001133863.2:LOC729737::::TSS-UPSTREAM:UNKNOWN-INC		AluSx:Alu:16.3	20	1.17	N
3559	2	chr1	147401	147423	hom	ref	=	=	=											-16						1.17	N
3560	2	chr1	147423	147479	no-call	complex	=	?	?											-109						1.17	N
3561	2	chr1	147479	147528	hom	ref	=	=	=											12						1.17	N
3562	2	chr1	147528	147540	no-call	complex	=	?	?											-106						1.17	N
3563	2	chr1	147540	147564	hom	ref	=	=	=											26						1.17	N
3564	2	chr1	147564	147612	no-call	complex	=	?	?											-65						1.17	N
3565	2	chr1	147612	147675	hom	ref	=	=	=											19						1.17	N
3566	2	chr1	147675	147707	no-call	complex	=	?	?											-42						1.17	N
3567	2	chr1	147707	147739	hom	ref	=	=	=											13						1.17	N
3568	2	chr1	147739	147753	no-call	complex	=	?	?											-5						1.17	N
3569	2	chr1	147753	147917	hom	ref	=	=	=											-27						1.17	N
3570	2	chr1	147917	147917	half	ref			?	23	0									2	729737:XM_001133863.2:LOC729737::::TSS-UPSTREAM:UNKNOWN-INC	729737:XM_001133863.2:LOC729737::::TSS-UPSTREAM:UNKNOWN-INC		AluJb:Alu:20.2;L1MB8:L1:30.7	20	1.17	N
3571	2	chr1	147917	148011	hom	ref	=	=	=											2						1.17	N
3572	2	chr1	148011	148040	no-call	complex	=	?	?											-21						1.17	N
3573	2	chr1	148040	148172	hom	ref	=	=	=											5						1.17	N
3574	2	chr1	148172	148201	no-call	complex	=	?	?											-65						1.17	N
3575	2	chr1	148201	148224	hom	ref	=	=	=											22						1.17	N
3576	2	chr1	148224	148262	no-call	complex	=	?	?											-93						1.17	N
3577	2	chr1	148262	148306	hom	ref	=	=	=											-79						1.17	N
3578	2	chr1	148306	148347	no-call	complex	=	?	?											-99						1.17	N
3579	2	chr1	148347	148478	hom	ref	=	=	=											-2						1.17	N
3580	2	chr1	148478	148523	no-call	complex	=	?	?											-105						1.17	N
3581	2	chr1	148523	148541	hom	ref	=	=	=											11						1.17	N
3582	2	chr1	148541	148590	no-call	complex	=	?	?											-26						1.17	N
3583	2	chr1	148590	148612	hom	ref	=	=	=											25						1.17	N
3584	2	chr1	148612	148623	no-call	complex	=	?	?											-32						1.17	N
3585	2	chr1	148623	148653	hom	ref	=	=	=											14						1.17	N
3586	2	chr1	148653	148688	no-call	complex	=	?	?											-27						1.17	N
3587	2	chr1	148688	148702	hom	ref	=	=	=											11						1.17	N
3588	2	chr1	148702	148797	no-call	complex	=	?	?											-174						1.17	N
3589	2	chr1	148797	148823	hom	ref	=	=	=											12						1.17	N
3590	2	chr1	148823	148856	no-call	complex	=	?	?											-45						1.17	N
3591	2	chr1	148856	148924	hom	ref	=	=	=											4						1.17	N
3592	2	chr1	148924	148962	no-call	complex	=	?	?											-97						1.17	N
3593	2	chr1	148962	149112	hom	ref	=	=	=											-5						1.17	N
3594	2	chr1	149112	149113	half	ref	G	G	N	42	120	1605	1606							2	729737:XM_001133863.2:LOC729737::::TSS-UPSTREAM:UNKNOWN-INC	729737:XM_001133863.2:LOC729737::::TSS-UPSTREAM:UNKNOWN-INC		Tigger12c:TcMar-Tigger:35.6	19	1.17	N
3595	2	chr1	149113	149118	hom	ref	=	=	=											-13						1.17	N
3596	2	chr1	149118	149119	half	ref	G	G	N	120	120	1605	1606							-13	729737:XM_001133863.2:LOC729737::::TSS-UPSTREAM:UNKNOWN-INC	729737:XM_001133863.2:LOC729737::::TSS-UPSTREAM:UNKNOWN-INC		Tigger12c:TcMar-Tigger:35.6	19	1.17	N
3597	2	chr1	149119	149168	hom	ref	=	=	=											-13						1.17	N
3598	2	chr1	149168	149188	no-call	complex	=	?	?											-7						1.17	N
3599	2	chr1	149188	149200	hom	ref	=	=	=											12						1.17	N
3600	2	chr1	149200	149244	no-call	complex	=	?	?											-70						1.17	N
3601	2	chr1	149244	149458	hom	ref	=	=	=											-1						1.17	N
3602	2	chr1	149458	149506	no-call	complex	=	?	?											-6						1.17	N
3603	2	chr1	149506	149542	hom	ref	=	=	=											-9						1.17	N
3604	2	chr1	149542	149578	no-call	complex	=	?	?											-51						1.17	N
3605	2	chr1	149578	149629	hom	ref	=	=	=											13						1.17	N
3606	2	chr1	149629	149636	no-call	complex	=	?	?											-30						1.17	N
3607	2	chr1	149636	149675	hom	ref	=	=	=											14						1.17	N
3608	2	chr1	149675	149720	no-call	complex	=	?	?											-244						1.17	N
3609	2	chr1	149720	149785	hom	ref	=	=	=											-13						1.17	N
3610	2	chr1	149785	149786	half	ref	C	C	N	44	120									-13					19	1.17	N
3611	2	chr1	149786	149870	hom	ref	=	=	=											-19						1.17	N
3612	2	chr1	149870	149912	no-call	complex	=	?	?											-66						1.17	N
3613	2	chr1	149912	150015	hom	ref	=	=	=											12						1.17	N
3614	2	chr1	150015	150064	no-call	complex	=	?	?											-68						1.17	N
3615	2	chr1	150064	150083	hom	ref	=	=	=											23						1.17	N
3616	2	chr1	150083	150114	no-call	complex	=	?	?											-25						1.17	N
3617	2	chr1	150114	150127	hom	ref	=	=	=											19						1.17	N
3618	2	chr1	150127	150176	no-call	complex	=	?	?											-7						1.17	N
3619	2	chr1	150176	150334	hom	ref	=	=	=											-5						1.17	N
3620	2	chr1	150334	150355	no-call	complex	=	?	?											-8						1.17	N
3621	2	chr1	150355	150416	hom	ref	=	=	=											17						1.17	N
3622	2	chr1	150416	150435	no-call	complex	=	?	?											-51						1.17	N
3623	2	chr1	150435	150449	hom	ref	=	=	=											22						1.17	N
3624	2	chr1	150449	150494	no-call	complex	=	?	?											-24						1.17	N
3625	2	chr1	150494	150656	hom	ref	=	=	=											3						1.17	N
3626	2	chr1	150656	150701	no-call	complex	=	?	?											-122						1.17	N
3627	2	chr1	150701	150739	hom	ref	=	=	=											17						1.17	N
3628	2	chr1	150739	150786	no-call	complex	=	?	?											-70						1.17	N
3629	2	chr1	150786	150823	hom	ref	=	=	=											32						1.17	N
3630	2	chr1	150823	150834	no-call	complex	=	?	?											-39						1.17	N
3631	2	chr1	150834	150848	hom	ref	=	=	=											33						1.17	N
3632	2	chr1	150848	150881	no-call	complex	=	?	?											-21						1.17	N
3633	2	chr1	150881	150976	hom	ref	=	=	=											-19						1.17	N
3634	2	chr1	150976	151021	no-call	complex	=	?	?											-108						1.17	N
3635	2	chr1	151021	151033	hom	ref	=	=	=											18						1.17	N
3636	2	chr1	151033	151058	no-call	complex	=	?	?											-80						1.17	N
3637	2	chr1	151058	151239	hom	ref	=	=	=											-1						1.17	N
3638	2	chr1	151239	151276	no-call	complex	=	?	?											-100						1.17	N
3639	2	chr1	151276	151312	hom	ref	=	=	=											13						1.17	N
3640	2	chr1	151312	151313	half	ref	C	C	N	44	88									13				L2a:L2:37.0	19	1.17	N
3641	2	chr1	151313	151341	hom	ref	=	=	=											5						1.17	N
3642	2	chr1	151341	151342	half	ref	A	A	N	88	88	1633	1634							5				AluJb:Alu:23.3	19	1.17	N
3643	2	chr1	151342	151353	hom	ref	=	=	=											5						1.17	N
3644	2	chr1	151353	151354	half	ref	T	T	N	88	88	1633	1634							19				AluJb:Alu:23.3	19	1.17	N
3645	2	chr1	151354	151475	hom	ref	=	=	=											8						1.17	N
3646	2	chr1	151475	151542	no-call	complex	=	?	?											-318						1.17	N
3647	2	chr1	151542	151586	hom	ref	=	=	=											11						1.17	N
3648	2	chr1	151586	151597	no-call	complex	=	?	?											-28						1.17	N
3649	2	chr1	151597	151714	hom	ref	=	=	=											-32						1.17	N
3650	2	chr1	151714	151790	no-call	complex	=	?	?											-93						1.17	N
3651	2	chr1	151790	151809	hom	ref	=	=	=											-27						1.17	N
3652	2	chr1	151809	151810	half	ref	C	C	N	85	122									-27				AluJb:Alu:23.3	18	1.17	N
3653	2	chr1	151810	151838	hom	ref	=	=	=											-27						1.17	N
3654	2	chr1	151838	151874	no-call	complex	=	?	?											-44						1.17	N
3655	2	chr1	151874	151885	hom	ref	=	=	=											20						1.17	N
3656	2	chr1	151885	151929	no-call	complex	=	?	?											-40						1.17	N
3657	2	chr1	151929	151953	hom	ref	=	=	=											18						1.17	N
3658	2	chr1	151953	151960	no-call	complex	=	?	?											-13						1.17	N
3659	2	chr1	151960	151998	hom	ref	=	=	=											18						1.17	N
3660	2	chr1	151998	152028	no-call	complex	=	?	?											-52						1.17	N
3661	2	chr1	152028	152119	hom	ref	=	=	=											11						1.17	N
3662	2	chr1	152119	152151	no-call	complex	=	?	?											-30						1.17	N
3663	2	chr1	152151	152203	hom	ref	=	=	=											11						1.17	N
3664	2	chr1	152203	152236	no-call	complex	=	?	?											-3						1.17	N
3665	2	chr1	152236	152378	hom	ref	=	=	=											-9						1.17	N
3666	2	chr1	152378	152379	half	ref	T	T	N	76	120									-9				AluJr:Alu:21.7	17	1.17	N
3667	2	chr1	152379	152463	hom	ref	=	=	=											-11						1.17	N
3668	2	chr1	152463	152464	half	ref	T	T	N	39	120									-11				AluJr:Alu:21.7	17	1.17	N
3669	2	chr1	152464	152529	hom	ref	=	=	=											-25						1.17	N
3670	2	chr1	152529	152570	no-call	complex	=	?	?											-27						1.17	N
3671	2	chr1	152570	152586	hom	ref	=	=	=											-12						1.17	N
3672	2	chr1	152586	152587	half	ref	G	G	N	59	120									-12				MER21C:ERVL:33.0	17	1.17	N
3673	2	chr1	152587	152729	hom	ref	=	=	=											-44						1.17	N
3674	2	chr1	152729	152748	no-call	complex	=	?	?											-56						1.17	N
3675	2	chr1	152748	152758	hom	ref	=	=	=											21						1.17	N
3676	2	chr1	152758	152783	no-call	complex	=	?	?											-75						1.17	N
3677	2	chr1	152783	152821	hom	ref	=	=	=											22						1.17	N
3678	2	chr1	152821	152844	no-call	complex	=	?	?											-29						1.17	N
3679	2	chr1	152844	152867	hom	ref	=	=	=											10						1.17	N
3680	2	chr1	152867	152919	no-call	complex	=	?	?											-35						1.17	N
3681	2	chr1	152919	152932	hom	ref	=	=	=											21						1.17	N
3682	2	chr1	152932	152978	no-call	complex	=	?	?											-6						1.17	N
3683	2	chr1	152978	152999	hom	ref	=	=	=											-10						1.17	N
3684	2	chr1	152999	152999	half	ref			?	27	0	1659	1660							32				AluSq2:Alu:14.9	17	1.17	N
3685	2	chr1	152999	153007	hom	ref	=	=	=											2						1.17	N
3686	2	chr1	153007	153010	half	ref	CGG	CGG	NGN	38	118	1659	1660							2				AluSq2:Alu:14.9	17	1.17	N
3687	2	chr1	153010	153030	hom	ref	=	=	=											12						1.17	N
3688	2	chr1	153030	153037	no-call	complex	=	?	?											-56						1.17	N
3689	2	chr1	153037	153069	hom	ref	=	=	=											20						1.17	N
3690	2	chr1	153069	153095	no-call	complex	=	?	?											-312						1.17	N
3691	2	chr1	153095	153105	hom	ref	=	=	=											24						1.17	N
3692	2	chr1	153105	153169	no-call	complex	=	?	?											-61						1.17	N
3693	2	chr1	153169	153265	hom	ref	=	=	=											-8						1.17	N
3694	2	chr1	153265	153266	half	ref	A	A	N	121	121									1				MER21C:ERVL:33.0	17	1.17	N
3695	2	chr1	153266	153281	hom	ref	=	=	=											1						1.17	N
3696	2	chr1	153281	153328	no-call	complex	=	?	?											-13						1.17	N
3697	2	chr1	153328	153519	hom	ref	=	=	=											-7						1.17	N
3698	2	chr1	153519	153559	no-call	complex	=	?	?											-85						1.17	N
3699	2	chr1	153559	153640	hom	ref	=	=	=											11						1.17	N
3700	2	chr1	153640	153694	no-call	complex	=	?	?											-50						1.17	N
3701	2	chr1	153694	153740	hom	ref	=	=	=											13						1.17	N
3702	2	chr1	153740	153779	no-call	complex	=	?	?											-179						1.17	N
3703	2	chr1	153779	153798	hom	ref	=	=	=											17						1.17	N
3704	2	chr1	153798	153828	no-call	complex	=	?	?											-167						1.17	N
3705	2	chr1	153828	153860	hom	ref	=	=	=											19						1.17	N
3706	2	chr1	153860	153892	no-call	complex	=	?	?											-43						1.17	N
3707	2	chr1	153892	153951	hom	ref	=	=	=											19						1.17	N
3708	2	chr1	153951	153999	no-call	complex	=	?	?											-33						1.17	N
3709	2	chr1	153999	154068	hom	ref	=	=	=											15						1.17	N
3710	2	chr1	154068	154130	no-call	complex	=	?	?											-22						1.17	N
3711	2	chr1	154130	154148	hom	ref	=	=	=											18						1.17	N
3712	2	chr1	154148	154191	no-call	complex	=	?	?											-131						1.17	N
3713	2	chr1	154191	154224	hom	ref	=	=	=											8						1.17	N
3714	2	chr1	154224	154225	half	ref	C	C	?	120	0	1673	1674							8				MER11B:ERVK:25.5	17	1.17	N
3715	2	chr1	154225	154227	hom	ref	=	=	=											0						1.17	N
3716	2	chr1	154227	154228	half	ref	T	T	N	120	120	1673	1674							0				MER11B:ERVK:25.5	17	1.17	N
3717	2	chr1	154228	154327	hom	ref	=	=	=											0						1.17	N
3718	2	chr1	154327	154328	half	ref	G	G	N	93	93	1675	1676							10				MER11B:ERVK:25.5	17	1.17	N
3719	2	chr1	154328	154338	hom	ref	=	=	=											-2						1.17	N
3720	2	chr1	154338	154340	half	ref	AA	AA	NN	93	93	1675	1676							-2				MER11B:ERVK:25.5	17	1.17	N
3721	2	chr1	154340	154441	hom	ref	=	=	=											1						1.17	N
3722	2	chr1	154441	154448	no-call	complex	=	?	?											-72						1.17	N
3723	2	chr1	154448	154556	hom	ref	=	=	=											-24						1.17	N
3724	2	chr1	154556	154564	half	ref	AGGCCTCT	AGGCCTCT	?	21	0									-17				MER11B:ERVK:25.5	18	1.17	N
3725	2	chr1	154564	154597	hom	ref	=	=	=											-17						1.17	N
3726	2	chr1	154597	154605	no-call	complex	=	?	?											-18						1.17	N
3727	2	chr1	154605	154615	hom	ref	=	=	=											18						1.17	N
3728	2	chr1	154615	154651	no-call	complex	=	?	?											-46						1.17	N
3729	2	chr1	154651	154668	hom	ref	=	=	=											16						1.17	N
3730	2	chr1	154668	154675	no-call	complex	=	?	?											-149						1.17	N
3731	2	chr1	154675	154775	hom	ref	=	=	=											12						1.17	N
3732	2	chr1	154775	154789	no-call	complex	=	?	?											-264						1.17	N
3733	2	chr1	154789	154927	hom	ref	=	=	=											-7						1.17	N
3734	2	chr1	154927	154965	no-call	complex	=	?	?											-272						1.17	N
3735	2	chr1	154965	154971	hom	ref	=	=	=											11						1.17	N
3736	2	chr1	154971	154978	no-call	complex	=	?	?											-70						1.17	N
3737	2	chr1	154978	154987	hom	ref	=	=	=											21						1.17	N
3738	2	chr1	154987	155060	no-call	complex	=	?	?											-71						1.17	N
3739	2	chr1	155060	155073	hom	ref	=	=	=											16						1.17	N
3740	2	chr1	155073	155099	no-call	complex	=	?	?											-12						1.17	N
3741	2	chr1	155099	155231	hom	ref	=	=	=											0						1.17	N
3742	2	chr1	155231	155277	no-call	complex	=	?	?											-128						1.17	N
3743	2	chr1	155277	155413	hom	ref	=	=	=											6						1.17	N
3744	2	chr1	155413	155445	no-call	complex	=	?	?											-35						1.17	N
3745	2	chr1	155445	155461	hom	ref	=	=	=											12						1.17	N
3746	2	chr1	155461	155509	no-call	complex	=	?	?											-20						1.17	N
3747	2	chr1	155509	155521	hom	ref	=	=	=											11						1.17	N
3748	2	chr1	155521	155528	no-call	complex	=	?	?											-11						1.17	N
3749	2	chr1	155528	155544	hom	ref	=	=	=											24						1.17	N
3750	2	chr1	155544	155574	no-call	complex	=	?	?											-206						1.17	N
3751	2	chr1	155574	155600	hom	ref	=	=	=											10						1.17	N
3752	2	chr1	155600	155651	no-call	complex	=	?	?											-15						1.17	N
3753	2	chr1	155651	155673	hom	ref	=	=	=											9						1.17	N
3754	2	chr1	155673	155725	no-call	complex	=	?	?											-41						1.17	N
3755	2	chr1	155725	155731	hom	ref	=	=	=											14						1.17	N
3756	2	chr1	155731	155771	no-call	complex	=	?	?											-53						1.17	N
3757	2	chr1	155771	155783	hom	ref	=	=	=											15						1.17	N
3758	2	chr1	155783	155811	no-call	complex	=	?	?											-81						1.17	N
3759	2	chr1	155811	155830	hom	ref	=	=	=											20						1.17	N
3760	2	chr1	155830	155830	half	ref			?	35	0									27					18	1.17	N
3761	2	chr1	155830	155848	hom	ref	=	=	=											9						1.17	N
3762	2	chr1	155848	155884	no-call	complex	=	?	?											-98						1.17	N
3763	2	chr1	155884	155892	hom	ref	=	=	=											15						1.17	N
3764	2	chr1	155892	155934	no-call	complex	=	?	?											-10						1.17	N
3765	2	chr1	155934	155941	hom	ref	=	=	=											24						1.17	N
3766	2	chr1	155941	155970	no-call	complex	=	?	?											-67						1.17	N
3767	2	chr1	155970	155993	hom	ref	=	=	=											-33						1.17	N
3768	2	chr1	155993	155993	half	ref			?	42	0	1711	1712							-33					18	1.17	N
3769	2	chr1	155993	155999	hom	ref	=	=	=											-36						1.17	N
3770	2	chr1	155999	156000	half	ref	A	A	?	32	0	1711	1712							-34				AluJb:Alu:20.8	18	1.17	N
3771	2	chr1	156000	156078	hom	ref	=	=	=											-34						1.17	N
3772	2	chr1	156078	156079	half	ref	G	G	N	120	120	1713	1714							17				AluJb:Alu:20.8	18	1.17	N
3773	2	chr1	156079	156096	hom	ref	=	=	=											-2						1.17	N
3774	2	chr1	156096	156097	half	ref	T	T	N	120	120	1713	1714							-2				AluJb:Alu:20.8	18	1.17	N
3775	2	chr1	156097	156116	hom	ref	=	=	=											-2						1.17	N
3776	2	chr1	156116	156126	no-call	complex	=	?	?											-26						1.17	N
3777	2	chr1	156126	156136	hom	ref	=	=	=											13						1.17	N
3778	2	chr1	156136	156140	half	ref	TGCA	TGCA	NGNN	21	54	1715	1716							-6				AluJo:Alu:26.0	18	1.17	N
3779	2	chr1	156140	156150	hom	ref	=	=	=											-6						1.17	N
3780	2	chr1	156150	156152	half	ref	TA	TA	NN	22	63	1715	1716							3				AluJo:Alu:26.0	18	1.17	N
3781	2	chr1	156152	156180	hom	ref	=	=	=											-7						1.17	N
3782	2	chr1	156180	156181	half	ref	T	T	N	63	63	1715	1716							-7				AluJo:Alu:26.0	18	1.17	N
3783	2	chr1	156181	156219	hom	ref	=	=	=											-7						1.17	N
3784	2	chr1	156219	156220	half	ref	C	C	N	35	120	1717	1718							-5				AluJo:Alu:26.0	18	1.17	N
3785	2	chr1	156220	156225	hom	ref	=	=	=											-5						1.17	N
3786	2	chr1	156225	156226	half	ref	T	T	N	120	120	1717	1718							-5				AluJo:Alu:26.0	18	1.17	N
3787	2	chr1	156226	156269	hom	ref	=	=	=											-5						1.17	N
3788	2	chr1	156269	156302	no-call	complex	=	?	?											-66						1.17	N
3789	2	chr1	156302	156386	hom	ref	=	=	=											6						1.17	N
3790	2	chr1	156386	156448	no-call	complex	=	?	?											-18						1.17	N
3791	2	chr1	156448	156459	hom	ref	=	=	=											17						1.17	N
3792	2	chr1	156459	156471	no-call	complex	=	?	?											-41						1.17	N
3793	2	chr1	156471	156488	hom	ref	=	=	=											14						1.17	N
3794	2	chr1	156488	156573	no-call	complex	=	?	?											-48						1.17	N
3795	2	chr1	156573	156586	hom	ref	=	=	=											19						1.17	N
3796	2	chr1	156586	156615	no-call	complex	=	?	?											-65						1.17	N
3797	2	chr1	156615	156670	hom	ref	=	=	=											11						1.17	N
3798	2	chr1	156670	156699	no-call	complex	=	?	?											-29						1.17	N
3799	2	chr1	156699	156723	hom	ref	=	=	=											6						1.17	N
3800	2	chr1	156723	156731	half	ref	TAAAAGTA	TAAAAGTA	?	24	0	1727	1728							4				AT_rich:Low_complexity:5.1	18	1.17	N
3801	2	chr1	156731	156742	hom	ref	=	=	=											7						1.17	N
3802	2	chr1	156742	156756	half	ref	TATAATTTAATAAA	TATAATTTAATAAA	?	22	0	1727	1728							-3				AT_rich:Low_complexity:5.1	18	1.17	N
3803	2	chr1	156756	156843	hom	ref	=	=	=											-14						1.17	N
3804	2	chr1	156843	156858	no-call	complex	ATGCTTATAATACCA	NTGCTTATAATACCA	NNNNTNNNNATNCCN	43	21	1729	1730							-14				AluJr:Alu:25.3	18	1.17	N
3805	2	chr1	156858	156862	hom	ref	=	=	=											-1						1.17	N
3806	2	chr1	156862	156864	half	ref	TT	TT	NN	120	120	1729	1730							-1				AluJr:Alu:25.3	18	1.17	N
3807	2	chr1	156864	156868	hom	ref	=	=	=											3						1.17	N
3808	2	chr1	156868	156869	half	ref	A	A	N	64	73	1729	1730							16				AluJr:Alu:25.3	18	1.17	N
3809	2	chr1	156869	156878	hom	ref	=	=	=											10						1.17	N
3810	2	chr1	156878	156897	no-call	complex	=	?	?											-27						1.17	N
3811	2	chr1	156897	156947	hom	ref	=	=	=											20						1.17	N
3812	2	chr1	156947	156954	no-call	complex	=	?	?											6						1.17	N
3813	2	chr1	156954	156994	hom	ref	=	=	=											7						1.17	N
3814	2	chr1	156994	156995	half	ref	T	T	N	48	120									7				AluJr:Alu:25.3	18	1.17	N
3815	2	chr1	156995	157100	hom	ref	=	=	=											-5						1.17	N
3816	2	chr1	157100	157101	half	ref	T	T	N	48	48	1731	1732							-5				AluJr:Alu:25.3	18	1.17	N
3817	2	chr1	157101	157105	hom	ref	=	=	=											-5						1.17	N
3818	2	chr1	157105	157114	no-call	complex	TCAAAAAAA	TCAAAAAAA?	?	0	0	1731	1732							-1				AluJr:Alu:25.3	18	1.17	N
3819	2	chr1	157114	157137	hom	ref	=	=	=											-1						1.17	N
3820	2	chr1	157137	157148	no-call	complex	=	?	?											-21						1.17	N
3821	2	chr1	157148	157161	hom	ref	=	=	=											18						1.17	N
3822	2	chr1	157161	157209	no-call	complex	=	?	?											-137						1.17	N
3823	2	chr1	157209	157277	hom	ref	=	=	=											18						1.17	N
3824	2	chr1	157277	157322	no-call	complex	=	?	?											-96						1.17	N
3825	2	chr1	157322	157392	hom	ref	=	=	=											16						1.17	N
3826	2	chr1	157392	157397	no-call	complex	ATTAT	ATTNT	?	22	0									-13				L1M5:L1:39.2	18	1.17	N
3827	2	chr1	157397	157437	hom	ref	=	=	=											8						1.17	N
3828	2	chr1	157437	157466	no-call	complex	=	?	?											-142						1.17	N
3829	2	chr1	157466	157479	hom	ref	=	=	=											10						1.17	N
3830	2	chr1	157479	157510	no-call	complex	=	?	?											-39						1.17	N
3831	2	chr1	157510	157532	hom	ref	=	=	=											5						1.17	N
3832	2	chr1	157532	157533	half	ref	G	G	N	64	121									5				AluJr4:Alu:29.2	18	1.17	N
3833	2	chr1	157533	157574	hom	ref	=	=	=											-12						1.17	N
3834	2	chr1	157574	157575	half	ref	C	C	N	121	121									3				AluJr4:Alu:29.2	18	1.17	N
3835	2	chr1	157575	157615	hom	ref	=	=	=											2						1.17	N
3836	2	chr1	157615	157641	no-call	complex	=	?	?											-342						1.17	N
3837	2	chr1	157641	157663	hom	ref	=	=	=											25						1.17	N
3838	2	chr1	157663	157702	no-call	complex	=	?	?											-4						1.17	N
3839	2	chr1	157702	157742	hom	ref	=	=	=											16						1.17	N
3840	2	chr1	157742	157749	no-call	complex	=	?	?											-185						1.17	N
3841	2	chr1	157749	157759	hom	ref	=	=	=											16						1.17	N
3842	2	chr1	157759	157794	no-call	complex	=	?	?											-51						1.17	N
3843	2	chr1	157794	157875	hom	ref	=	=	=											6						1.17	N
3844	2	chr1	157875	157913	no-call	complex	=	?	?											-3						1.17	N
3845	2	chr1	157913	157983	hom	ref	=	=	=											10						1.17	N
3846	2	chr1	157983	158015	no-call	complex	=	?	?											-107						1.17	N
3847	2	chr1	158015	158084	hom	ref	=	=	=											10						1.17	N
3848	2	chr1	158084	158091	no-call	complex	=	?	?											-9						1.17	N
3849	2	chr1	158091	158173	hom	ref	=	=	=											7						1.17	N
3850	2	chr1	158173	158198	no-call	complex	=	?	?											-13						1.17	N
3851	2	chr1	158198	158360	hom	ref	=	=	=											-24						1.17	N
3852	2	chr1	158360	158396	no-call	complex	=	?	?											-112						1.17	N
3853	2	chr1	158396	158460	hom	ref	=	=	=											-6						1.17	N
3854	2	chr1	158460	158483	no-call	complex	=	?	?											-38						1.17	N
3855	2	chr1	158483	158581	hom	ref	=	=	=											3						1.17	N
3856	2	chr1	158581	158610	no-call	complex	=	?	?											-184						1.17	N
3857	2	chr1	158610	158635	hom	ref	=	=	=											11						1.17	N
3858	2	chr1	158635	158642	no-call	complex	=	?	?											-104						1.17	N
3859	2	chr1	158642	158694	hom	ref	=	=	=											8						1.17	N
3860	2	chr1	158694	158697	half	ref	CAT	CAT	NNN	33	84									3					18	1.17	N
3861	2	chr1	158697	158734	hom	ref	=	=	=											3						1.17	N
3862	2	chr1	158734	158780	no-call	complex	=	?	?											-69						1.17	N
3863	2	chr1	158780	158832	hom	ref	=	=	=											16						1.17	N
3864	2	chr1	158832	158862	no-call	complex	=	?	?											-65						1.17	N
3865	2	chr1	158862	158909	hom	ref	=	=	=											6						1.17	N
3866	2	chr1	158909	158910	half	ref	G	G	N	138	138									6				AluJr:Alu:19.6	18	1.17	N
3867	2	chr1	158910	158985	hom	ref	=	=	=											5						1.17	N
3868	2	chr1	158985	159051	no-call	complex	=	?	?											-145						1.17	N
3869	2	chr1	159051	159094	hom	ref	=	=	=											2						1.17	N
3870	2	chr1	159094	159095	half	ref	G	G	N	120	120									30					18	1.17	N
3871	2	chr1	159095	159155	hom	ref	=	=	=											-2						1.17	N
3872	2	chr1	159155	159186	no-call	complex	=	?	?											-87						1.17	N
3873	2	chr1	159186	159214	hom	ref	=	=	=											11						1.17	N
3874	2	chr1	159214	159249	no-call	complex	=	?	?											-40						1.17	N
3875	2	chr1	159249	159264	hom	ref	=	=	=											26						1.17	N
3876	2	chr1	159264	159271	no-call	complex	=	?	?											-5						1.17	N
3877	2	chr1	159271	159392	hom	ref	=	=	=											-32						1.17	N
3878	2	chr1	159392	159433	no-call	complex	=	?	?											-75						1.17	N
3879	2	chr1	159433	159478	hom	ref	=	=	=											-50						1.17	N
3880	2	chr1	159478	159478	half	ref			?	31	0	1763	1764							-50				AluSx1:Alu:7.1	18	1.17	N
3881	2	chr1	159478	159481	hom	ref	=	=	=											-50						1.17	N
3882	2	chr1	159481	159482	half	ref	A	A	?	38	0	1763	1764							17				AluSx1:Alu:7.1	18	1.17	N
3883	2	chr1	159482	159524	hom	ref	=	=	=											9						1.17	N
3884	2	chr1	159524	159574	no-call	complex	=	?	?											-44						1.17	N
3885	2	chr1	159574	159712	hom	ref	=	=	=											-32						1.17	N
3886	2	chr1	159712	159714	half	ref	GA	GA	NN	56	120									-16					18	1.17	N
3887	2	chr1	159714	159795	hom	ref	=	=	=											-11						1.17	N
3888	2	chr1	159795	159803	no-call	complex	=	?	?											-17						1.17	N
3889	2	chr1	159803	159949	hom	ref	=	=	=											-15						1.17	N
3890	2	chr1	159949	159975	no-call	complex	=	?	?											-103						1.17	N
3891	2	chr1	159975	160000	hom	ref	=	=	=											20						1.17	N
3892	2	chr1	160000	160007	no-call	complex	=	?	?											-10						1.17	N
3893	2	chr1	160007	160077	hom	ref	=	=	=											10						1.17	N
3894	2	chr1	160077	160096	no-call	complex	=	?	?											8						1.17	N
3895	2	chr1	160096	160110	hom	ref	=	=	=											18						1.17	N
3896	2	chr1	160110	160117	no-call	complex	=	?	?											-100						1.17	N
3897	2	chr1	160117	160203	hom	ref	=	=	=											10						1.17	N
3898	2	chr1	160203	160223	no-call	complex	=	?	?											-1						1.17	N
3899	2	chr1	160223	160255	hom	ref	=	=	=											1						1.17	N
3900	2	chr1	160255	160256	half	ref	G	G	N	29	120	1771	1772							1					18	1.17	N
3901	2	chr1	160256	160300	hom	ref	=	=	=											-23						1.17	N
3902	2	chr1	160300	160300	half	ref			?	27	0	1771	1772							30					18	1.17	N
3903	2	chr1	160300	160323	hom	ref	=	=	=											23						1.17	N
3904	2	chr1	160323	160353	no-call	complex	=	?	?											-120						1.17	N
3905	2	chr1	160353	160427	hom	ref	=	=	=											2						1.17	N
3906	2	chr1	160427	160457	no-call	complex	=	?	?											-52						1.17	N
3907	2	chr1	160457	160467	hom	ref	=	=	=											13						1.17	N
3908	2	chr1	160467	160491	no-call	complex	=	?	?											5						1.17	N
3909	2	chr1	160491	160541	hom	ref	=	=	=											13						1.17	N
3910	2	chr1	160541	160565	no-call	complex	=	?	?											-28						1.17	N
3911	2	chr1	160565	160613	hom	ref	=	=	=											13						1.17	N
3912	2	chr1	160613	160620	no-call	complex	=	?	?											-129						1.17	N
3913	2	chr1	160620	160674	hom	ref	=	=	=											-8						1.17	N
3914	2	chr1	160674	160675	half	ref	A	A	N	49	107									8					18	1.17	N
3915	2	chr1	160675	160696	hom	ref	=	=	=											8						1.17	N
3916	2	chr1	160696	160733	no-call	complex	=	?	?											-55						1.17	N
3917	2	chr1	160733	160752	hom	ref	=	=	=											0						1.17	N
3918	2	chr1	160752	160753	half	ref	T	T	N	120	120									0					18	1.17	N
3919	2	chr1	160753	160813	hom	ref	=	=	=											0						1.17	N
3920	2	chr1	160813	160853	no-call	complex	=	?	?											-20						1.17	N
3921	2	chr1	160853	160942	hom	ref	=	=	=											-3						1.17	N
3922	2	chr1	160942	160979	no-call	complex	=	?	?											-44						1.17	N
3923	2	chr1	160979	161095	hom	ref	=	=	=											-43						1.17	N
3924	2	chr1	161095	161096	half	ref	T	T	N	25	119									-9					18	1.17	N
3925	2	chr1	161096	161169	hom	ref	=	=	=											-9						1.17	N
3926	2	chr1	161169	161178	no-call	complex	=	?	?											-53						1.17	N
3927	2	chr1	161178	161204	hom	ref	=	=	=											14						1.17	N
3928	2	chr1	161204	161223	no-call	complex	=	?	?											-46						1.17	N
3929	2	chr1	161223	161283	hom	ref	=	=	=											5						1.17	N
3930	2	chr1	161283	161331	no-call	complex	=	?	?											-94						1.17	N
3931	2	chr1	161331	161346	hom	ref	=	=	=											18						1.17	N
3932	2	chr1	161346	161384	no-call	complex	=	?	?											-111						1.17	N
3933	2	chr1	161384	161402	hom	ref	=	=	=											12						1.17	N
3934	2	chr1	161402	161429	no-call	complex	=	?	?											-147						1.17	N
3935	2	chr1	161429	161445	hom	ref	=	=	=											18						1.17	N
3936	2	chr1	161445	161493	no-call	complex	=	?	?											-113						1.17	N
3937	2	chr1	161493	161498	hom	ref	=	=	=											10						1.17	N
3938	2	chr1	161498	161512	no-call	complex	=	?	?											-4						1.17	N
3939	2	chr1	161512	161575	hom	ref	=	=	=											6						1.17	N
3940	2	chr1	161575	161576	half	ref	A	A	?	120	0									6				L1MC4:L1:39.4	18	1.17	N
3941	2	chr1	161576	161621	hom	ref	=	=	=											6						1.17	N
3942	2	chr1	161621	161660	no-call	complex	=	?	?											-42						1.17	N
3943	2	chr1	161660	161908	hom	ref	=	=	=											-16						1.17	N
3944	2	chr1	161908	161909	half	ref	A	A	N	50	100									-6					17	1.17	N
3945	2	chr1	161909	161943	hom	ref	=	=	=											-6						1.17	N
3946	2	chr1	161943	161950	no-call	complex	=	?	?											-23						1.17	N
3947	2	chr1	161950	162047	hom	ref	=	=	=											-45						1.17	N
3948	2	chr1	162047	162054	no-call	complex	=	?	?											-95						1.17	N
3949	2	chr1	162054	162103	hom	ref	=	=	=											-160						1.17	N
3950	2	chr1	162103	162103	half	ref			?	24	0									-160					17	1.17	N
3951	2	chr1	162103	162122	hom	ref	=	=	=											-160						1.17	N
3952	2	chr1	162122	162148	no-call	complex	=	?	?											-7						1.17	N
3953	2	chr1	162148	162167	hom	ref	=	=	=											-3						1.17	N
3954	2	chr1	162167	162167	half	ref			?	21	0									4				MSTD:ERVL-MaLR:18.2	17	1.17	N
3955	2	chr1	162167	162279	hom	ref	=	=	=											-46						1.17	N
3956	2	chr1	162279	162349	no-call	complex	=	?	?											-50						1.17	N
3957	2	chr1	162349	162377	hom	ref	=	=	=											22						1.17	N
3958	2	chr1	162377	162419	no-call	complex	=	?	?											-12						1.17	N
3959	2	chr1	162419	162427	hom	ref	=	=	=											17						1.17	N
3960	2	chr1	162427	162466	no-call	complex	=	?	?											-323						1.17	N
3961	2	chr1	162466	162488	hom	ref	=	=	=											18						1.17	N
3962	2	chr1	162488	162519	no-call	complex	=	?	?											-44						1.17	N
3963	2	chr1	162519	162568	hom	ref	=	=	=											-6						1.17	N
3964	2	chr1	162568	162575	no-call	complex	=	?	?											-139						1.17	N
3965	2	chr1	162575	162598	hom	ref	=	=	=											15						1.17	N
3966	2	chr1	162598	162632	no-call	complex	=	?	?											-25						1.17	N
3967	2	chr1	162632	162685	hom	ref	=	=	=											9						1.17	N
3968	2	chr1	162685	162685	half	ref			?	30	0	1797	1798							12				MSTD:ERVL-MaLR:28.3	17	1.17	N
3969	2	chr1	162685	162687	hom	ref	=	=	=											-50						1.17	N
3970	2	chr1	162687	162688	half	ref	G	G	?	114	0	1797	1798							-50				MSTD:ERVL-MaLR:28.3	17	1.17	N
3971	2	chr1	162688	162788	hom	ref	=	=	=											-50						1.17	N
3972	2	chr1	162788	162814	no-call	complex	=	?	?											-123						1.17	N
3973	2	chr1	162814	162871	hom	ref	=	=	=											7						1.17	N
3974	2	chr1	162871	162897	no-call	complex	=	?	?											-42						1.17	N
3975	2	chr1	162897	162941	hom	ref	=	=	=											10						1.17	N
3976	2	chr1	162941	162989	no-call	complex	=	?	?											-19						1.17	N
3977	2	chr1	162989	163005	hom	ref	=	=	=											29						1.17	N
3978	2	chr1	163005	163047	no-call	complex	=	?	?											-21						1.17	N
3979	2	chr1	163047	163059	hom	ref	=	=	=											20						1.17	N
3980	2	chr1	163059	163106	no-call	complex	=	?	?											-6						1.17	N
3981	2	chr1	163106	163157	hom	ref	=	=	=											-8						1.17	N
3982	2	chr1	163157	163158	half	ref	G	G	N	120	120									-8					17	1.17	N
3983	2	chr1	163158	163185	hom	ref	=	=	=											-11						1.17	N
3984	2	chr1	163185	163192	no-call	complex	=	?	?											-23						1.17	N
3985	2	chr1	163192	163216	hom	ref	=	=	=											13						1.17	N
3986	2	chr1	163216	163260	no-call	complex	=	?	?											-14						1.17	N
3987	2	chr1	163260	163323	hom	ref	=	=	=											10						1.17	N
3988	2	chr1	163323	163370	no-call	complex	=	?	?											-29						1.17	N
3989	2	chr1	163370	163406	hom	ref	=	=	=											19						1.17	N
3990	2	chr1	163406	163421	no-call	complex	=	?	?											-80						1.17	N
3991	2	chr1	163421	163512	hom	ref	=	=	=											13						1.17	N
3992	2	chr1	163512	163524	no-call	complex	=	?	?											-183						1.17	N
3993	2	chr1	163524	163618	hom	ref	=	=	=											0						1.17	N
3994	2	chr1	163618	163633	no-call	complex	=	?	?											-30						1.17	N
3995	2	chr1	163633	163652	hom	ref	=	=	=											16						1.17	N
3996	2	chr1	163652	163683	no-call	complex	=	?	?											-77						1.17	N
3997	2	chr1	163683	163708	hom	ref	=	=	=											-24						1.17	N
3998	2	chr1	163708	163709	half	ref	G	G	?	120	0									32					17	1.17	N
3999	2	chr1	163709	163777	hom	ref	=	=	=											0						1.17	N
4000	2	chr1	163777	163836	no-call	complex	=	?	?											-70						1.17	N
4001	2	chr1	163836	163854	hom	ref	=	=	=											-32						1.17	N
4002	2	chr1	163854	163855	half	ref	C	C	N	170	170									-32				AluSq2:Alu:15.3	16	1.17	N
4003	2	chr1	163855	163882	hom	ref	=	=	=											-32						1.17	N
4004	2	chr1	163882	163904	no-call	complex	=	?	?											-7						1.17	N
4005	2	chr1	163904	163957	hom	ref	=	=	=											10						1.17	N
4006	2	chr1	163957	163992	no-call	complex	=	?	?											-36						1.17	N
4007	2	chr1	163992	164001	hom	ref	=	=	=											16						1.17	N
4008	2	chr1	164001	164034	no-call	complex	=	?	?											-9						1.17	N
4009	2	chr1	164034	164083	hom	ref	=	=	=											13						1.17	N
4010	2	chr1	164083	164126	no-call	complex	=	?	?											-4						1.17	N
4011	2	chr1	164126	164150	hom	ref	=	=	=											14						1.17	N
4012	2	chr1	164150	164186	no-call	complex	=	?	?											-13						1.17	N
4013	2	chr1	164186	164218	hom	ref	=	=	=											40						1.17	N
4014	2	chr1	164218	164235	no-call	complex	=	?	?											-75						1.17	N
4015	2	chr1	164235	164259	hom	ref	=	=	=											18						1.17	N
4016	2	chr1	164259	164299	no-call	complex	=	?	?											-165						1.17	N
4017	2	chr1	164299	164338	hom	ref	=	=	=											22						1.17	N
4018	2	chr1	164338	164380	no-call	complex	=	?	?											-76						1.17	N
4019	2	chr1	164380	164399	hom	ref	=	=	=											11						1.17	N
4020	2	chr1	164399	164443	no-call	complex	=	?	?											-7						1.17	N
4021	2	chr1	164443	164530	hom	ref	=	=	=											-6						1.17	N
4022	2	chr1	164530	164531	half	ref	A	A	N	75	122									-6				AluSq2:Alu:21.4	15	1.17	N
4023	2	chr1	164531	164652	hom	ref	=	=	=											-6						1.17	N
4024	2	chr1	164652	164653	half	ref	T	T	N	38	109									-3				AluSq2:Alu:21.4	15	1.17	N
4025	2	chr1	164653	164668	hom	ref	=	=	=											-3						1.17	N
4026	2	chr1	164668	164708	no-call	complex	=	?	?											-7						1.17	N
4027	2	chr1	164708	164715	hom	ref	=	=	=											14						1.17	N
4028	2	chr1	164715	164755	no-call	complex	=	?	?											-142						1.17	N
4029	2	chr1	164755	164761	hom	ref	=	=	=											26						1.17	N
4030	2	chr1	164761	164798	no-call	complex	=	?	?											-110						1.17	N
4031	2	chr1	164798	164810	hom	ref	=	=	=											19						1.17	N
4032	2	chr1	164810	164817	no-call	complex	=	?	?											-125						1.17	N
4033	2	chr1	164817	164868	hom	ref	=	=	=											0						1.17	N
4034	2	chr1	164868	164869	half	ref	C	C	N	40	120	1825	1826							0					15	1.17	N
4035	2	chr1	164869	164875	hom	ref	=	=	=											0						1.17	N
4036	2	chr1	164875	164876	half	ref	T	T	?	120	0	1825	1826							22					15	1.17	N
4037	2	chr1	164876	164940	hom	ref	=	=	=											-33						1.17	N
4038	2	chr1	164940	164941	half	ref	T	T	N	25	83									-33					15	1.17	N
4039	2	chr1	164941	165055	hom	ref	=	=	=											-33						1.17	N
4040	2	chr1	165055	165093	no-call	complex	=	?	?											-33						1.17	N
4041	2	chr1	165093	165127	hom	ref	=	=	=											10						1.17	N
4042	2	chr1	165127	165166	no-call	complex	=	?	?											-16						1.17	N
4043	2	chr1	165166	165199	hom	ref	=	=	=											13						1.17	N
4044	2	chr1	165199	165234	no-call	complex	=	?	?											-53						1.17	N
4045	2	chr1	165234	165258	hom	ref	=	=	=											23						1.17	N
4046	2	chr1	165258	165318	no-call	complex	=	?	?											-71						1.17	N
4047	2	chr1	165318	165390	hom	ref	=	=	=											-17						1.17	N
4048	2	chr1	165390	165391	half	ref	A	A	?	63	0									-17					15	1.17	N
4049	2	chr1	165391	165442	hom	ref	=	=	=											-17						1.17	N
4050	2	chr1	165442	165463	no-call	complex	=	?	?											-13						1.17	N
4051	2	chr1	165463	165492	hom	ref	=	=	=											14						1.17	N
4052	2	chr1	165492	165522	no-call	complex	=	?	?											-118						1.17	N
4053	2	chr1	165522	165564	hom	ref	=	=	=											19						1.17	N
4054	2	chr1	165564	165571	no-call	complex	=	?	?											-261						1.17	N
4055	2	chr1	165571	165595	hom	ref	=	=	=											30						1.17	N
4056	2	chr1	165595	165620	no-call	complex	=	?	?											-411						1.17	N
4057	2	chr1	165620	165690	hom	ref	=	=	=											15						1.17	N
4058	2	chr1	165690	165712	no-call	complex	=	?	?											-12						1.17	N
4059	2	chr1	165712	165763	hom	ref	=	=	=											1						1.17	N
4060	2	chr1	165763	165764	half	ref	T	T	N	120	120	1837	1838							5					15	1.17	N
4061	2	chr1	165764	165771	hom	ref	=	=	=											-3						1.17	N
4062	2	chr1	165771	165774	half	ref	GAC	GAC	NAN	30	120	1837	1838							-14					15	1.17	N
4063	2	chr1	165774	165853	hom	ref	=	=	=											-14						1.17	N
4064	2	chr1	165853	165882	no-call	complex	=	?	?											-55						1.17	N
4065	2	chr1	165882	165953	hom	ref	=	=	=											6						1.17	N
4066	2	chr1	165953	165999	no-call	complex	=	?	?											-36						1.17	N
4067	2	chr1	165999	166007	hom	ref	=	=	=											32						1.17	N
4068	2	chr1	166007	166059	no-call	complex	=	?	?											-102						1.17	N
4069	2	chr1	166059	166079	hom	ref	=	=	=											10						1.17	N
4070	2	chr1	166079	166082	half	ref	GTA	GTA	?	40	0	1845	1846							0				AluSx1:Alu:12.2	15	1.17	N
4071	2	chr1	166082	166087	hom	ref	=	=	=											14						1.17	N
4072	2	chr1	166087	166088	half	ref	A	A	N	23	113	1845	1846							22				AluSx1:Alu:12.2	15	1.17	N
4073	2	chr1	166088	166091	hom	ref	=	=	=											22						1.17	N
4074	2	chr1	166091	166094	half	ref	GTT	GTT	NTN	45	30	1845	1846							-3				AluSx1:Alu:12.2	15	1.17	N
4075	2	chr1	166094	166096	hom	ref	=	=	=											-9						1.17	N
4076	2	chr1	166096	166097	half	ref	G	G	N	113	53	1845	1846							-9				AluSx1:Alu:12.2	15	1.17	N
4077	2	chr1	166097	166102	hom	ref	=	=	=											-9						1.17	N
4078	2	chr1	166102	166107	half	ref	CGAGG	CGAGG	?	41	0	1845	1846							-24				AluSx1:Alu:12.2	15	1.17	N
4079	2	chr1	166107	166132	hom	ref	=	=	=											-24						1.17	N
4080	2	chr1	166132	166140	no-call	complex	=	?	?											-3						1.17	N
4081	2	chr1	166140	166219	hom	ref	=	=	=											-20						1.17	N
4082	2	chr1	166219	166242	no-call	complex	=	?	?											-118						1.17	N
4083	2	chr1	166242	166351	hom	ref	=	=	=											13						1.17	N
4084	2	chr1	166351	166394	no-call	complex	=	?	?											-1						1.17	N
4085	2	chr1	166394	166437	hom	ref	=	=	=											-4						1.17	N
4086	2	chr1	166437	166438	half	ref	A	A	N	64	129									-4				MIRb:MIR:47.0	15	1.17	N
4087	2	chr1	166438	166490	hom	ref	=	=	=											-4						1.17	N
4088	2	chr1	166490	166506	no-call	complex	=	?	?											-149						1.17	N
4089	2	chr1	166506	166516	hom	ref	=	=	=											24						1.17	N
4090	2	chr1	166516	166545	no-call	complex	=	?	?											-108						1.17	N
4091	2	chr1	166545	166552	hom	ref	=	=	=											18						1.17	N
4092	2	chr1	166552	166568	no-call	complex	=	?	?											-13						1.17	N
4093	2	chr1	166568	166599	hom	ref	=	=	=											-21						1.17	N
4094	2	chr1	166599	166601	half	ref	CC	CC	?	91	0									-9					15	1.17	N
4095	2	chr1	166601	166620	hom	ref	=	=	=											-23						1.17	N
4096	2	chr1	166620	166621	half	ref	G	G	N	91	91									-23					15	1.17	N
4097	2	chr1	166621	166673	hom	ref	=	=	=											-35						1.17	N
4098	2	chr1	166673	166673	half	ref			?	86	0	1857	1858							-35					15	1.17	N
4099	2	chr1	166673	166695	hom	ref	=	=	=											-35						1.17	N
4100	2	chr1	166695	166696	half	ref	A	A	N	41	111	1857	1858							-24					15	1.17	N
4101	2	chr1	166696	166802	hom	ref	=	=	=											-24						1.17	N
4102	2	chr1	166802	166844	no-call	complex	=	?	?											-71						1.17	N
4103	2	chr1	166844	166872	hom	ref	=	=	=											17						1.17	N
4104	2	chr1	166872	166922	no-call	complex	=	?	?											-107						1.17	N
4105	2	chr1	166922	166938	hom	ref	=	=	=											5						1.17	N
4106	2	chr1	166938	166938	half	ref			?	31	0									12					15	1.17	N
4107	2	chr1	166938	166955	hom	ref	=	=	=											12						1.17	N
4108	2	chr1	166955	167017	no-call	complex	=	?	?											-386						1.17	N
4109	2	chr1	167017	167103	hom	ref	=	=	=											3						1.17	N
4110	2	chr1	167103	167111	no-call	complex	=	?	?											-7						1.17	N
4111	2	chr1	167111	167134	hom	ref	=	=	=											17						1.17	N
4112	2	chr1	167134	167181	no-call	complex	=	?	?											-10						1.17	N
4113	2	chr1	167181	167237	hom	ref	=	=	=											23						1.17	N
4114	2	chr1	167237	167260	no-call	complex	=	?	?											-71						1.17	N
4115	2	chr1	167260	167284	hom	ref	=	=	=											23						1.17	N
4116	2	chr1	167284	167315	no-call	complex	=	?	?											-2						1.17	N
4117	2	chr1	167315	167354	hom	ref	=	=	=											12						1.17	N
4118	2	chr1	167354	167390	no-call	complex	=	?	?											-123						1.17	N
4119	2	chr1	167390	167486	hom	ref	=	=	=											-26						1.17	N
4120	2	chr1	167486	167486	half	ref			?	41	0									1					15	1.17	N
4121	2	chr1	167486	167569	hom	ref	=	=	=											-12						1.17	N
4122	2	chr1	167569	167569	half	ref			?	23	0									21				AluSg7:Alu:8.7	15	1.17	N
4123	2	chr1	167569	167617	hom	ref	=	=	=											-34						1.17	N
4124	2	chr1	167617	167617	half	ref			?	31	0									-32				AluSg7:Alu:8.7	15	1.17	N
4125	2	chr1	167617	167663	hom	ref	=	=	=											-32						1.17	N
4126	2	chr1	167663	167671	no-call	complex	=	?	?											-215						1.17	N
4127	2	chr1	167671	167690	hom	ref	=	=	=											16						1.17	N
4128	2	chr1	167690	167748	no-call	complex	=	?	?											-82						1.17	N
4129	2	chr1	167748	167756	hom	ref	=	=	=											13						1.17	N
4130	2	chr1	167756	167785	no-call	complex	=	?	?											-40						1.17	N
4131	2	chr1	167785	167862	hom	ref	=	=	=											-38						1.17	N
4132	2	chr1	167862	167872	no-call	complex	=	?	?											-6						1.17	N
4133	2	chr1	167872	167940	hom	ref	=	=	=											-21						1.17	N
4134	2	chr1	167940	167941	half	ref	G	G	?	40	0									16					14	1.17	N
4135	2	chr1	167941	168051	hom	ref	=	=	=											15						1.17	N
4136	2	chr1	168051	168069	no-call	complex	=	?	?											-110						1.17	N
4137	2	chr1	168069	168094	hom	ref	=	=	=											13						1.17	N
4138	2	chr1	168094	168137	no-call	complex	=	?	?											-335						1.17	N
4139	2	chr1	168137	168144	hom	ref	=	=	=											26						1.17	N
4140	2	chr1	168144	168151	no-call	complex	=	?	?											-72						1.17	N
4141	2	chr1	168151	168222	hom	ref	=	=	=											21						1.17	N
4142	2	chr1	168222	168255	no-call	complex	=	?	?											-79						1.17	N
4143	2	chr1	168255	168294	hom	ref	=	=	=											-35						1.17	N
4144	2	chr1	168294	168294	half	ref			?	29	0									-35					14	1.17	N
4145	2	chr1	168294	168344	hom	ref	=	=	=											-35						1.17	N
4146	2	chr1	168344	168396	no-call	complex	=	?	?											-33						1.17	N
4147	2	chr1	168396	168467	hom	ref	=	=	=											10						1.17	N
4148	2	chr1	168467	168507	no-call	complex	=	?	?											3						1.17	N
4149	2	chr1	168507	168527	hom	ref	=	=	=											16						1.17	N
4150	2	chr1	168527	168529	half	ref	GC	GC	?	89	0	1879	1880							20				AluSx1:Alu:24.1	14	1.17	N
4151	2	chr1	168529	168539	hom	ref	=	=	=											-24						1.17	N
4152	2	chr1	168539	168540	half	ref	G	G	?	119	0	1879	1880							-24				AluSx1:Alu:24.1	14	1.17	N
4153	2	chr1	168540	168556	hom	ref	=	=	=											-24						1.17	N
4154	2	chr1	168556	168613	no-call	complex	=	?	?											-93						1.17	N
4155	2	chr1	168613	168622	hom	ref	=	=	=											-24						1.17	N
4156	2	chr1	168622	168622	half	ref			?	21	0	1885	1886							-24				AluSx1:Alu:24.1	14	1.17	N
4157	2	chr1	168622	168635	hom	ref	=	=	=											-24						1.17	N
4158	2	chr1	168635	168640	half	ref	TGGCG	TGGCG	?	31	0	1885	1886							-11				AluSx1:Alu:24.1	14	1.17	N
4159	2	chr1	168640	168650	hom	ref	=	=	=											-11						1.17	N
4160	2	chr1	168650	168651	half	ref	G	G	N	21	80	1885	1886							1				AluSx1:Alu:24.1	14	1.17	N
4161	2	chr1	168651	168667	hom	ref	=	=	=											-4						1.17	N
4162	2	chr1	168667	168670	half	ref	GGC	GGC	?	48	0									6				AluSx1:Alu:24.1	14	1.17	N
4163	2	chr1	168670	168690	hom	ref	=	=	=											6						1.17	N
4164	2	chr1	168690	168691	half	ref	A	A	N	46	112	1887	1888							6				AluSx1:Alu:24.1	14	1.17	N
4165	2	chr1	168691	168693	hom	ref	=	=	=											6						1.17	N
4166	2	chr1	168693	168693	half	ref			?	31	0	1887	1888							18				AluSx1:Alu:24.1	14	1.17	N
4167	2	chr1	168693	168696	hom	ref	=	=	=											-6						1.17	N
4168	2	chr1	168696	168697	half	ref	G	G	?	51	0	1887	1888							4				AluSx1:Alu:24.1	14	1.17	N
4169	2	chr1	168697	168706	hom	ref	=	=	=											4						1.17	N
4170	2	chr1	168706	168707	half	ref	A	A	N	58	112	1887	1888							13				AluSx1:Alu:24.1	14	1.17	N
4171	2	chr1	168707	168710	hom	ref	=	=	=											13						1.17	N
4172	2	chr1	168710	168712	half	ref	CA	CA	?	53	0	1887	1888							14				AluSx1:Alu:24.1	14	1.17	N
4173	2	chr1	168712	168716	hom	ref	=	=	=											-7						1.17	N
4174	2	chr1	168716	168717	half	ref	G	G	N	25	112	1887	1888							-7				AluSx1:Alu:24.1	14	1.17	N
4175	2	chr1	168717	168746	hom	ref	=	=	=											-7						1.17	N
4176	2	chr1	168746	168778	no-call	complex	=	?	?											-54						1.17	N
4177	2	chr1	168778	168804	hom	ref	=	=	=											13						1.17	N
4178	2	chr1	168804	168826	no-call	complex	=	?	?											-40						1.17	N
4179	2	chr1	168826	168838	hom	ref	=	=	=											8						1.17	N
4180	2	chr1	168838	168839	half	ref	C	C	N	120	112	1893	1894							8					14	1.17	N
4181	2	chr1	168839	168845	hom	ref	=	=	=											8						1.17	N
4182	2	chr1	168845	168846	half	ref	A	A	?	120	0	1893	1894							45					14	1.17	N
4183	2	chr1	168846	168949	hom	ref	=	=	=											-14						1.17	N
4184	2	chr1	168949	168996	no-call	complex	=	?	?											-36						1.17	N
4185	2	chr1	168996	169029	hom	ref	=	=	=											22						1.17	N
4186	2	chr1	169029	169036	no-call	complex	=	?	?											-40						1.17	N
4187	2	chr1	169036	169055	hom	ref	=	=	=											19						1.17	N
4188	2	chr1	169055	169091	no-call	complex	=	?	?											-185						1.17	N
4189	2	chr1	169091	169163	hom	ref	=	=	=											0						1.17	N
4190	2	chr1	169163	169208	no-call	complex	=	?	?											-11						1.17	N
4191	2	chr1	169208	169221	hom	ref	=	=	=											17						1.17	N
4192	2	chr1	169221	169234	no-call	complex	=	?	?											-26						1.17	N
4193	2	chr1	169234	169261	hom	ref	=	=	=											30						1.17	N
4194	2	chr1	169261	169273	no-call	complex	=	?	?											-19						1.17	N
4195	2	chr1	169273	169360	hom	ref	=	=	=											-13						1.17	N
4196	2	chr1	169360	169362	half	ref	AC	AC	?	49	0									6					14	1.17	N
4197	2	chr1	169362	169402	hom	ref	=	=	=											1						1.17	N
4198	2	chr1	169402	169429	no-call	complex	=	?	?											-7						1.17	N
4199	2	chr1	169429	169484	hom	ref	=	=	=											8						1.17	N
4200	2	chr1	169484	169516	no-call	complex	=	?	?											-52						1.17	N
4201	2	chr1	169516	169577	hom	ref	=	=	=											5						1.17	N
4202	2	chr1	169577	169586	no-call	complex	=	?	?											-156						1.17	N
4203	2	chr1	169586	169679	hom	ref	=	=	=											-16						1.17	N
4204	2	chr1	169679	169679	half	ref			?	23	0									-16				AluSz:Alu:13.1	15	1.17	N
4205	2	chr1	169679	169710	hom	ref	=	=	=											-16						1.17	N
4206	2	chr1	169710	169743	no-call	complex	=	?	?											-443						1.17	N
4207	2	chr1	169743	169757	hom	ref	=	=	=											4						1.17	N
4208	2	chr1	169757	169758	half	ref	C	C	N	122	122									4					15	1.17	N
4209	2	chr1	169758	169855	hom	ref	=	=	=											4						1.17	N
4210	2	chr1	169855	169894	no-call	complex	=	?	?											-33						1.17	N
4211	2	chr1	169894	169918	hom	ref	=	=	=											11						1.17	N
4212	2	chr1	169918	169952	no-call	complex	=	?	?											-85						1.17	N
4213	2	chr1	169952	170119	hom	ref	=	=	=											-21						1.17	N
4214	2	chr1	170119	170120	half	ref	C	C	N	93	120	1911	1912							17				AluSz6:Alu:17.8	15	1.17	N
4215	2	chr1	170120	170125	hom	ref	=	=	=											8						1.17	N
4216	2	chr1	170125	170126	half	ref	T	T	N	110	120	1911	1912							8				AluSz6:Alu:17.8	15	1.17	N
4217	2	chr1	170126	170167	hom	ref	=	=	=											16						1.17	N
4218	2	chr1	170167	170211	no-call	complex	=	?	?											-192						1.17	N
4219	2	chr1	170211	170304	hom	ref	=	=	=											-44						1.17	N
4220	2	chr1	170304	170305	half	ref	T	T	N	120	120	1913	1914							-44					15	1.17	N
4221	2	chr1	170305	170309	hom	ref	=	=	=											-44						1.17	N
4222	2	chr1	170309	170310	half	ref	C	C	N	43	120	1913	1914							-6					15	1.17	N
4223	2	chr1	170310	170336	hom	ref	=	=	=											-6						1.17	N
4224	2	chr1	170336	170337	half	ref	T	T	N	35	120									9					15	1.17	N
4225	2	chr1	170337	170374	hom	ref	=	=	=											9						1.17	N
4226	2	chr1	170374	170393	no-call	complex	=	?	?											-180						1.17	N
4227	2	chr1	170393	170410	hom	ref	=	=	=											11						1.17	N
4228	2	chr1	170410	170448	no-call	complex	=	?	?											-275						1.17	N
4229	2	chr1	170448	170459	hom	ref	=	=	=											28						1.17	N
4230	2	chr1	170459	170509	no-call	complex	=	?	?											-60						1.17	N
4231	2	chr1	170509	170524	hom	ref	=	=	=											10						1.17	N
4232	2	chr1	170524	170580	no-call	complex	=	?	?											-35						1.17	N
4233	2	chr1	170580	170588	hom	ref	=	=	=											3						1.17	N
4234	2	chr1	170588	170589	half	ref	C	C	N	46	125									3					15	1.17	N
4235	2	chr1	170589	170626	hom	ref	=	=	=											3						1.17	N
4236	2	chr1	170626	170674	no-call	complex	=	?	?											-37						1.17	N
4237	2	chr1	170674	170693	hom	ref	=	=	=											0						1.17	N
4238	2	chr1	170693	170695	half	ref	GG	GG	NN	120	120	1921	1922							0					15	1.17	N
4239	2	chr1	170695	170697	hom	ref	=	=	=											-6						1.17	N
4240	2	chr1	170697	170698	half	ref	C	C	N	120	120	1921	1922							-6					15	1.17	N
4241	2	chr1	170698	170726	hom	ref	=	=	=											3						1.17	N
4242	2	chr1	170726	170748	no-call	complex	=	?	?											-33						1.17	N
4243	2	chr1	170748	170763	hom	ref	=	=	=											12						1.17	N
4244	2	chr1	170763	170786	no-call	complex	=	?	?											-29						1.17	N
4245	2	chr1	170786	170846	hom	ref	=	=	=											19						1.17	N
4246	2	chr1	170846	170853	no-call	complex	=	?	?											-56						1.17	N
4247	2	chr1	170853	170868	hom	ref	=	=	=											14						1.17	N
4248	2	chr1	170868	170897	no-call	complex	=	?	?											-68						1.17	N
4249	2	chr1	170897	170930	hom	ref	=	=	=											21						1.17	N
4250	2	chr1	170930	170972	no-call	complex	=	?	?											-71						1.17	N
4251	2	chr1	170972	171050	hom	ref	=	=	=											0						1.17	N
4252	2	chr1	171050	171051	half	ref	T	T	N	120	120									0				AluSq2:Alu:13.0	15	1.17	N
4253	2	chr1	171051	171102	hom	ref	=	=	=											0						1.17	N
4254	2	chr1	171102	171134	no-call	complex	=	?	?											-84						1.17	N
4255	2	chr1	171134	171159	hom	ref	=	=	=											-11						1.17	N
4256	2	chr1	171159	171160	half	ref	T	T	N	31	120									-2				AluSq2:Alu:13.0	15	1.17	N
4257	2	chr1	171160	171174	hom	ref	=	=	=											-2						1.17	N
4258	2	chr1	171174	171222	no-call	complex	=	?	?											-58						1.17	N
4259	2	chr1	171222	171235	hom	ref	=	=	=											22						1.17	N
4260	2	chr1	171235	171242	no-call	complex	=	?	?											0						1.17	N
4261	2	chr1	171242	171418	hom	ref	=	=	=											8						1.17	N
4262	2	chr1	171418	171419	half	ref	A	A	N	47	120									4					14	1.17	N
4263	2	chr1	171419	171510	hom	ref	=	=	=											4						1.17	N
4264	2	chr1	171510	171577	no-call	complex	=	?	?											-27						1.17	N
4265	2	chr1	171577	171584	hom	ref	=	=	=											11						1.17	N
4266	2	chr1	171584	171591	no-call	complex	=	?	?											-57						1.17	N
4267	2	chr1	171591	171719	hom	ref	=	=	=											-5						1.17	N
4268	2	chr1	171719	171726	no-call	complex	=	?	?											-98						1.17	N
4269	2	chr1	171726	171773	hom	ref	=	=	=											18						1.17	N
4270	2	chr1	171773	171794	no-call	complex	=	?	?											-18						1.17	N
4271	2	chr1	171794	171830	hom	ref	=	=	=											10						1.17	N
4272	2	chr1	171830	171851	no-call	complex	=	?	?											-58						1.17	N
4273	2	chr1	171851	172068	hom	ref	=	=	=											-44						1.17	N
4274	2	chr1	172068	172075	no-call	complex	=	?	?											-48						1.17	N
4275	2	chr1	172075	172091	hom	ref	=	=	=											14						1.17	N
4276	2	chr1	172091	172139	no-call	complex	=	?	?											-66						1.17	N
4277	2	chr1	172139	172198	hom	ref	=	=	=											10						1.17	N
4278	2	chr1	172198	172230	no-call	complex	=	?	?											-56						1.17	N
4279	2	chr1	172230	172373	hom	ref	=	=	=											-20						1.17	N
4280	2	chr1	172373	172393	no-call	complex	=	?	?											-45						1.17	N
4281	2	chr1	172393	172497	hom	ref	=	=	=											5						1.17	N
4282	2	chr1	172497	172499	half	ref	GC	GC	NN	46	120									5					14	1.17	N
4283	2	chr1	172499	172516	hom	ref	=	=	=											17						1.17	N
4284	2	chr1	172516	172548	no-call	complex	=	?	?											-7						1.17	N
4285	2	chr1	172548	172557	hom	ref	=	=	=											15						1.17	N
4286	2	chr1	172557	172609	no-call	complex	=	?	?											-29						1.17	N
4287	2	chr1	172609	172628	hom	ref	=	=	=											12						1.17	N
4288	2	chr1	172628	172636	no-call	complex	=	?	?											-22						1.17	N
4289	2	chr1	172636	172704	hom	ref	=	=	=											4						1.17	N
4290	2	chr1	172704	172711	no-call	complex	=	?	?											-159						1.17	N
4291	2	chr1	172711	172857	hom	ref	=	=	=											-24						1.17	N
4292	2	chr1	172857	172880	no-call	complex	=	?	?											-61						1.17	N
4293	2	chr1	172880	172931	hom	ref	=	=	=											9						1.17	N
4294	2	chr1	172931	172954	no-call	complex	=	?	?											-61						1.17	N
4295	2	chr1	172954	172966	hom	ref	=	=	=											16						1.17	N
4296	2	chr1	172966	172995	no-call	complex	=	?	?											-221						1.17	N
4297	2	chr1	172995	173043	hom	ref	=	=	=											-10						1.17	N
4298	2	chr1	173043	173061	no-call	complex	=	?	?											-19						1.17	N
4299	2	chr1	173061	173069	hom	ref	=	=	=											20						1.17	N
4300	2	chr1	173069	173102	no-call	complex	=	?	?											-47						1.17	N
4301	2	chr1	173102	173123	hom	ref	=	=	=											20						1.17	N
4302	2	chr1	173123	173138	no-call	complex	=	?	?											-135						1.17	N
4303	2	chr1	173138	173149	hom	ref	=	=	=											10						1.17	N
4304	2	chr1	173149	173218	no-call	complex	=	?	?											-73						1.17	N
4305	2	chr1	173218	173241	hom	ref	=	=	=											5						1.17	N
4306	2	chr1	173241	173243	half	ref	CA	CA	?	75	0	1955	1956							17					14	1.17	N
4307	2	chr1	173243	173253	hom	ref	=	=	=											-12						1.17	N
4308	2	chr1	173253	173253	half	ref			?	20	0	1955	1956							-12					14	1.17	N
4309	2	chr1	173253	173302	hom	ref	=	=	=											-12						1.17	N
4310	2	chr1	173302	173350	no-call	complex	=	?	?											-56						1.17	N
4311	2	chr1	173350	173396	hom	ref	=	=	=											14						1.17	N
4312	2	chr1	173396	173430	no-call	complex	=	?	?											-29						1.17	N
4313	2	chr1	173430	173442	hom	ref	=	=	=											12						1.17	N
4314	2	chr1	173442	173470	no-call	complex	=	?	?											-1						1.17	N
4315	2	chr1	173470	173512	hom	ref	=	=	=											17						1.17	N
4316	2	chr1	173512	173549	no-call	complex	=	?	?											-10						1.17	N
4317	2	chr1	173549	173581	hom	ref	=	=	=											10						1.17	N
4318	2	chr1	173581	173606	no-call	complex	=	?	?											-168						1.17	N
4319	2	chr1	173606	173633	hom	ref	=	=	=											13						1.17	N
4320	2	chr1	173633	173656	no-call	complex	=	?	?											-368						1.17	N
4321	2	chr1	173656	173679	hom	ref	=	=	=											20						1.17	N
4322	2	chr1	173679	173686	no-call	complex	=	?	?											-1						1.17	N
4323	2	chr1	173686	173697	hom	ref	=	=	=											11						1.17	N
4324	2	chr1	173697	173745	no-call	complex	=	?	?											-296						1.17	N
4325	2	chr1	173745	173772	hom	ref	=	=	=											19						1.17	N
4326	2	chr1	173772	173796	no-call	complex	=	?	?											-129						1.17	N
4327	2	chr1	173796	173837	hom	ref	=	=	=											18						1.17	N
4328	2	chr1	173837	173867	no-call	complex	=	?	?											-10						1.17	N
4329	2	chr1	173867	173988	hom	ref	=	=	=											1						1.17	N
4330	2	chr1	173988	173995	no-call	complex	=	?	?											-68						1.17	N
4331	2	chr1	173995	174057	hom	ref	=	=	=											4						1.17	N
4332	2	chr1	174057	174058	half	ref	G	G	N	120	120									6					15	1.17	N
4333	2	chr1	174058	174188	hom	ref	=	=	=											-22						1.17	N
4334	2	chr1	174188	174226	no-call	complex	=	?	?											-78						1.17	N
4335	2	chr1	174226	174237	hom	ref	=	=	=											-13						1.17	N
4336	2	chr1	174237	174238	half	ref	G	G	N	121	121									-13					15	1.17	N
4337	2	chr1	174238	174376	hom	ref	=	=	=											-18						1.17	N
4338	2	chr1	174376	174409	no-call	complex	=	?	?											-44						1.17	N
4339	2	chr1	174409	174423	hom	ref	=	=	=											10						1.17	N
4340	2	chr1	174423	174465	no-call	complex	=	?	?											-30						1.17	N
4341	2	chr1	174465	174497	hom	ref	=	=	=											20						1.17	N
4342	2	chr1	174497	174540	no-call	complex	=	?	?											-48						1.17	N
4343	2	chr1	174540	174557	hom	ref	=	=	=											18						1.17	N
4344	2	chr1	174557	174591	no-call	complex	=	?	?											-38						1.17	N
4345	2	chr1	174591	174615	hom	ref	=	=	=											13						1.17	N
4346	2	chr1	174615	174632	no-call	complex	=	?	?											-19						1.17	N
4347	2	chr1	174632	174687	hom	ref	=	=	=											20						1.17	N
4348	2	chr1	174687	174727	no-call	complex	=	?	?											-20						1.17	N
4349	2	chr1	174727	174756	hom	ref	=	=	=											11						1.17	N
4350	2	chr1	174756	174790	no-call	complex	=	?	?											-71						1.17	N
4351	2	chr1	174790	174795	hom	ref	=	=	=											10						1.17	N
4352	2	chr1	174795	174817	no-call	complex	=	?	?											-16						1.17	N
4353	2	chr1	174817	174839	hom	ref	=	=	=											10						1.17	N
4354	2	chr1	174839	174867	no-call	complex	=	?	?											-74						1.17	N
4355	2	chr1	174867	174897	hom	ref	=	=	=											13						1.17	N
4356	2	chr1	174897	174977	no-call	complex	=	?	?											-34						1.17	N
4357	2	chr1	174977	175039	hom	ref	=	=	=											10						1.17	N
4358	2	chr1	175039	175076	no-call	complex	=	?	?											-236						1.17	N
4359	2	chr1	175076	175185	hom	ref	=	=	=											-5						1.17	N
4360	2	chr1	175185	175186	half	ref	G	G	?	121	0									3				AluSx:Alu:10.2	13	1.17	N
4361	2	chr1	175186	175200	hom	ref	=	=	=											15						1.17	N
4362	2	chr1	175200	175237	no-call	complex	=	?	?											-64						1.17	N
4363	2	chr1	175237	175243	hom	ref	=	=	=											11						1.17	N
4364	2	chr1	175243	175248	half	ref	TCGAG	TCGAG	NCNAN	22	49									-8				AluSx:Alu:10.2	13	1.17	N
4365	2	chr1	175248	175311	hom	ref	=	=	=											-8						1.17	N
4366	2	chr1	175311	175352	no-call	complex	=	?	?											-247						1.17	N
4367	2	chr1	175352	175369	hom	ref	=	=	=											11						1.17	N
4368	2	chr1	175369	175412	no-call	complex	=	?	?											-42						1.17	N
4369	2	chr1	175412	175427	hom	ref	=	=	=											20						1.17	N
4370	2	chr1	175427	175462	no-call	complex	=	?	?											-105						1.17	N
4371	2	chr1	175462	175524	hom	ref	=	=	=											16						1.17	N
4372	2	chr1	175524	175531	no-call	complex	=	?	?											-192						1.17	N
4373	2	chr1	175531	175606	hom	ref	=	=	=											-8						1.17	N
4374	2	chr1	175606	175606	half	ref			?	30	0									-8				AluSp:Alu:11.9	13	1.17	N
4375	2	chr1	175606	175633	hom	ref	=	=	=											-8						1.17	N
4376	2	chr1	175633	175667	no-call	complex	=	?	?											-28						1.17	N
4377	2	chr1	175667	175727	hom	ref	=	=	=											-26						1.17	N
4378	2	chr1	175727	175728	half	ref	G	G	N	25	89	1991	1992							-26				AluSp:Alu:11.9	14	1.17	N
4379	2	chr1	175728	175730	hom	ref	=	=	=											-26						1.17	N
4380	2	chr1	175730	175731	half	ref	T	T	N	89	89	1991	1992							-10				AluSp:Alu:11.9	14	1.17	N
4381	2	chr1	175731	175779	hom	ref	=	=	=											-10						1.17	N
4382	2	chr1	175779	175817	no-call	complex	=	?	?											-30						1.17	N
4383	2	chr1	175817	175838	hom	ref	=	=	=											10						1.17	N
4384	2	chr1	175838	175845	no-call	complex	=	?	?											-124						1.17	N
4385	2	chr1	175845	175919	hom	ref	=	=	=											10						1.17	N
4386	2	chr1	175919	175973	no-call	complex	=	?	?											-30						1.17	N
4387	2	chr1	175973	176036	hom	ref	=	=	=											6						1.17	N
4388	2	chr1	176036	176042	half	ref	AATATA	AATATA	?	36	0									3				AluSx:Alu:15.8	14	1.17	N
4389	2	chr1	176042	176058	hom	ref	=	=	=											12						1.17	N
4390	2	chr1	176058	176086	no-call	complex	=	?	?											-59						1.17	N
4391	2	chr1	176086	176091	hom	ref	=	=	=											13						1.17	N
4392	2	chr1	176091	176117	no-call	complex	=	?	?											-19						1.17	N
4393	2	chr1	176117	176128	hom	ref	=	=	=											11						1.17	N
4394	2	chr1	176128	176160	no-call	complex	=	?	?											-31						1.17	N
4395	2	chr1	176160	176181	hom	ref	=	=	=											18						1.17	N
4396	2	chr1	176181	176188	no-call	complex	=	?	?											-23						1.17	N
4397	2	chr1	176188	176198	hom	ref	=	=	=											18						1.17	N
4398	2	chr1	176198	176250	no-call	complex	=	?	?											-132						1.17	N
4399	2	chr1	176250	176265	hom	ref	=	=	=											26						1.17	N
4400	2	chr1	176265	176335	no-call	complex	=	?	?											-114						1.17	N
4401	2	chr1	176335	176344	hom	ref	=	=	=											9						1.17	N
4402	2	chr1	176344	176346	half	ref	AA	AA	?	25	0									9					14	1.17	N
4403	2	chr1	176346	176365	hom	ref	=	=	=											14						1.17	N
4404	2	chr1	176365	176400	no-call	complex	=	?	?											-58						1.17	N
4405	2	chr1	176400	176407	hom	ref	=	=	=											22						1.17	N
4406	2	chr1	176407	176448	no-call	complex	=	?	?											-464						1.17	N
4407	2	chr1	176448	176537	hom	ref	=	=	=											9						1.17	N
4408	2	chr1	176537	176548	no-call	complex	=	?	?											-376						1.17	N
4409	2	chr1	176548	176645	hom	ref	=	=	=											13						1.17	N
4410	2	chr1	176645	176697	no-call	complex	=	?	?											-112						1.17	N
4411	2	chr1	176697	176707	hom	ref	=	=	=											15						1.17	N
4412	2	chr1	176707	176743	no-call	complex	=	?	?											-76						1.17	N
4413	2	chr1	176743	176761	hom	ref	=	=	=											14						1.17	N
4414	2	chr1	176761	176768	no-call	complex	=	?	?											-18						1.17	N
4415	2	chr1	176768	176773	hom	ref	=	=	=											21						1.17	N
4416	2	chr1	176773	176813	no-call	complex	=	?	?											-66						1.17	N
4417	2	chr1	176813	176863	hom	ref	=	=	=											-25						1.17	N
4418	2	chr1	176863	176863	half	ref			?	24	0	2007	2008							-25					7	1.17	N
4419	2	chr1	176863	176882	hom	ref	=	=	=											-25						1.17	N
4420	2	chr1	176882	176882	half	ref			?	23	0	2007	2008							8					7	1.17	N
4421	2	chr1	176882	176928	hom	ref	=	=	=											4						1.17	N
4422	2	chr1	176928	176949	no-call	complex	=	?	?											-432						1.17	N
4423	2	chr1	176949	176976	hom	ref	=	=	=											11						1.17	N
4424	2	chr1	176976	177007	no-call	complex	=	?	?											-202						1.17	N
4425	2	chr1	177007	177083	hom	ref	=	=	=											15						1.17	N
4426	2	chr1	177083	177111	no-call	complex	=	?	?											-222						1.17	N
4427	2	chr1	177111	177129	hom	ref	=	=	=											16						1.17	N
4428	2	chr1	177129	177173	no-call	complex	=	?	?											-113						1.17	N
4429	2	chr1	177173	177192	hom	ref	=	=	=											7						1.17	N
4430	2	chr1	177192	177193	half	ref	A	A	N	26	115	2013	2014							7					7	1.17	N
4431	2	chr1	177193	177198	hom	ref	=	=	=											1						1.17	N
4432	2	chr1	177198	177199	half	ref	A	A	N	115	115	2013	2014							1					7	1.17	N
4433	2	chr1	177199	177231	hom	ref	=	=	=											9						1.17	N
4434	2	chr1	177231	177280	no-call	complex	=	?	?											-4						1.17	N
4435	2	chr1	177280	177288	hom	ref	=	=	=											17						1.17	N
4436	2	chr1	177288	177334	no-call	complex	=	?	?											-59						1.17	N
4437	2	chr1	177334	177360	hom	ref	=	=	=											11						1.17	N
4438	2	chr1	177360	177365	half	ref	AAGAT	AAGAT	?	28	0									17					7	1.17	N
4439	2	chr1	177365	177381	hom	ref	=	=	=											15						1.17	N
4440	2	chr1	177381	177417	no-call	complex	=	?	?											-20						1.17	N
4441	2	chr1	177417	227417	no-call	complex	=	?	?											-2							
4442	2	chr1	227417	227435	no-call	complex	=	?	?											-12						1.17	N
4443	2	chr1	227435	227460	hom	ref	=	=	=											-16						1.17	N
4444	2	chr1	227460	227461	half	ref	C	C	N	45	121	2023	2024							-16				MLT2B3:ERVL:25.0	9	1.17	N
4445	2	chr1	227461	227466	hom	ref	=	=	=											-15						1.17	N
4446	2	chr1	227466	227468	half	ref	GA	GA	NN	44	121	2023	2024							-15				MLT2B3:ERVL:25.0	9	1.17	N
4447	2	chr1	227468	227489	hom	ref	=	=	=											-6						1.17	N
4448	2	chr1	227489	227533	no-call	complex	=	?	?											-154						1.17	N
4449	2	chr1	227533	227538	hom	ref	=	=	=											16						1.17	N
4450	2	chr1	227538	227604	no-call	complex	=	?	?											-47						1.17	N
4451	2	chr1	227604	227610	hom	ref	=	=	=											17						1.17	N
4452	2	chr1	227610	227690	no-call	complex	=	?	?											-27						1.17	N
4453	2	chr1	227690	227733	hom	ref	=	=	=											21						1.17	N
4454	2	chr1	227733	227784	no-call	complex	=	?	?											-81						1.17	N
4455	2	chr1	227784	227840	hom	ref	=	=	=											-1						1.17	N
4456	2	chr1	227840	227860	no-call	complex	=	?	?											-7						1.17	N
4457	2	chr1	227860	227883	hom	ref	=	=	=											19						1.17	N
4458	2	chr1	227883	227937	no-call	complex	=	?	?											-77						1.17	N
4459	2	chr1	227937	227952	hom	ref	=	=	=											14						1.17	N
4460	2	chr1	227952	227983	no-call	complex	=	?	?											-14						1.17	N
4461	2	chr1	227983	228092	hom	ref	=	=	=											5						1.17	N
4462	2	chr1	228092	228116	no-call	complex	=	?	?											-41						1.17	N
4463	2	chr1	228116	228177	hom	ref	=	=	=											-6						1.17	N
4464	2	chr1	228177	228195	no-call	complex	=	?	?											-82						1.17	N
4465	2	chr1	228195	228215	hom	ref	=	=	=											11						1.17	N
4466	2	chr1	228215	228231	no-call	complex	=	?	?											-88						1.17	N
4467	2	chr1	228231	228239	hom	ref	=	=	=											24						1.17	N
4468	2	chr1	228239	228276	no-call	complex	=	?	?											-6						1.17	N
4469	2	chr1	228276	228311	hom	ref	=	=	=											14						1.17	N
4470	2	chr1	228311	228342	no-call	complex	=	?	?											-13						1.17	N
4471	2	chr1	228342	228414	hom	ref	=	=	=											32						1.17	N
4472	2	chr1	228414	228421	no-call	complex	=	?	?											-62						1.17	N
4473	2	chr1	228421	228459	hom	ref	=	=	=											20						1.17	N
4474	2	chr1	228459	228471	no-call	complex	=	?	?											-40						1.17	N
4475	2	chr1	228471	228490	hom	ref	=	=	=											12						1.17	N
4476	2	chr1	228490	228512	no-call	complex	=	?	?											-98						1.17	N
4477	2	chr1	228512	228527	hom	ref	=	=	=											13						1.17	N
4478	2	chr1	228527	228542	no-call	complex	=	?	?											-107						1.17	N
4479	2	chr1	228542	228589	hom	ref	=	=	=											12						1.17	N
4480	2	chr1	228589	228622	no-call	complex	=	?	?											-264						1.17	N
4481	2	chr1	228622	228643	hom	ref	=	=	=											15						1.17	N
4482	2	chr1	228643	228687	no-call	complex	=	?	?											-56						1.17	N
4483	2	chr1	228687	228704	hom	ref	=	=	=											37						1.17	N
4484	2	chr1	228704	228766	no-call	complex	=	?	?											-38						1.17	N
4485	2	chr1	228766	228785	hom	ref	=	=	=											12						1.17	N
4486	2	chr1	228785	228792	no-call	complex	=	?	?											-34						1.17	N
4487	2	chr1	228792	228855	hom	ref	=	=	=											12						1.17	N
4488	2	chr1	228855	228880	no-call	complex	=	?	?											5						1.17	N
4489	2	chr1	228880	228891	hom	ref	=	=	=											24						1.17	N
4490	2	chr1	228891	228928	no-call	complex	=	?	?											-70						1.17	N
4491	2	chr1	228928	229016	hom	ref	=	=	=											10						1.17	N
4492	2	chr1	229016	229049	no-call	complex	=	?	?											-79						1.17	N
4493	2	chr1	229049	229070	hom	ref	=	=	=											19						1.17	N
4494	2	chr1	229070	229100	no-call	complex	=	?	?											-20						1.17	N
4495	2	chr1	229100	229135	hom	ref	=	=	=											13						1.17	N
4496	2	chr1	229135	229142	no-call	complex	=	?	?											-3						1.17	N
4497	2	chr1	229142	229180	hom	ref	=	=	=											33						1.17	N
4498	2	chr1	229180	229213	no-call	complex	=	?	?											-63						1.17	N
4499	2	chr1	229213	229223	hom	ref	=	=	=											20						1.17	N
4500	2	chr1	229223	229253	no-call	complex	=	?	?											-24						1.17	N
4501	2	chr1	229253	229268	hom	ref	=	=	=											10						1.17	N
4502	2	chr1	229268	229308	no-call	complex	=	?	?											-36						1.17	N
4503	2	chr1	229308	229327	hom	ref	=	=	=											11						1.17	N
4504	2	chr1	229327	229362	no-call	complex	=	?	?											-17						1.17	N
4505	2	chr1	229362	229385	hom	ref	=	=	=											-1						1.17	N
4506	2	chr1	229385	229386	half	ref	G	G	N	140	140									-1				MER31-int:ERV1:33.3	14	1.17	N
4507	2	chr1	229386	229409	hom	ref	=	=	=											-22						1.17	N
4508	2	chr1	229409	229411	half	ref	TA	TA	?	30	0	2065	2066							-22				MER31-int:ERV1:33.3	14	1.17	N
4509	2	chr1	229411	229418	hom	ref	=	=	=											5						1.17	N
4510	2	chr1	229418	229421	half	ref	AGA	AGA	NGN	31	97	2065	2066							8				MER31-int:ERV1:33.3	14	1.17	N
4511	2	chr1	229421	229424	hom	ref	=	=	=											7						1.17	N
4512	2	chr1	229424	229425	half	ref	T	T	N	121	121	2065	2066							11				MER31-int:ERV1:33.3	14	1.17	N
4513	2	chr1	229425	229455	hom	ref	=	=	=											-75						1.17	N
4514	2	chr1	229455	229456	half	ref	C	C	N	61	167									-75				MER31-int:ERV1:33.3	14	1.17	N
4515	2	chr1	229456	229475	hom	ref	=	=	=											-75						1.17	N
4516	2	chr1	229475	229512	no-call	complex	=	?	?											-66						1.17	N
4517	2	chr1	229512	229553	hom	ref	=	=	=											15						1.17	N
4518	2	chr1	229553	229580	no-call	complex	=	?	?											-41						1.17	N
4519	2	chr1	229580	229647	hom	ref	=	=	=											12						1.17	N
4520	2	chr1	229647	229708	no-call	complex	=	?	?											-121						1.17	N
4521	2	chr1	229708	229760	hom	ref	=	=	=											-26						1.17	N
4522	2	chr1	229760	229761	half	ref	C	C	N	120	120									28				AluY:Alu:10.4	14	1.17	N
4523	2	chr1	229761	229784	hom	ref	=	=	=											9						1.17	N
4524	2	chr1	229784	229829	no-call	complex	=	?	?											-66						1.17	N
4525	2	chr1	229829	230035	hom	ref	=	=	=											-10						1.17	N
4526	2	chr1	230035	230079	no-call	complex	=	?	?											-28						1.17	N
4527	2	chr1	230079	230110	hom	ref	=	=	=											-35						1.17	N
4528	2	chr1	230110	230111	half	ref	G	G	N	120	120									-35				MER31-int:ERV1:27.1	19	1.17	N
4529	2	chr1	230111	230217	hom	ref	=	=	=											-35						1.17	N
4530	2	chr1	230217	230253	no-call	complex	=	?	?											-150						1.17	N
4531	2	chr1	230253	230297	hom	ref	=	=	=											33						1.17	N
4532	2	chr1	230297	230323	no-call	complex	=	?	?											-139						1.17	N
4533	2	chr1	230323	230428	hom	ref	=	=	=											11						1.17	N
4534	2	chr1	230428	230466	no-call	complex	=	?	?											-6						1.17	N
4535	2	chr1	230466	230493	hom	ref	=	=	=											12						1.17	N
4536	2	chr1	230493	230517	no-call	complex	=	?	?											-78						1.17	N
4537	2	chr1	230517	230522	hom	ref	=	=	=											22						1.17	N
4538	2	chr1	230522	230571	no-call	complex	=	?	?											-57						1.17	N
4539	2	chr1	230571	230624	hom	ref	=	=	=											-36						1.17	N
4540	2	chr1	230624	230625	half	ref	A	A	N	39	110									-36				L1MC3:L1:42.1	19	1.17	N
4541	2	chr1	230625	230639	hom	ref	=	=	=											-36						1.17	N
4542	2	chr1	230639	230679	no-call	complex	=	?	?											-35						1.17	N
4543	2	chr1	230679	230757	hom	ref	=	=	=											-16						1.17	N
4544	2	chr1	230757	230758	half	ref	A	A	N	20	80									-16				MSTB1:ERVL-MaLR:28.6	19	1.17	N
4545	2	chr1	230758	230766	hom	ref	=	=	=											-16						1.17	N
4546	2	chr1	230766	230864	no-call	complex	=	?	?											-271						1.17	N
4547	2	chr1	230864	230874	hom	ref	=	=	=											13						1.17	N
4548	2	chr1	230874	230897	no-call	complex	=	?	?											5						1.17	N
4549	2	chr1	230897	230909	hom	ref	=	=	=											25						1.17	N
4550	2	chr1	230909	230953	no-call	complex	=	?	?											-117						1.17	N
4551	2	chr1	230953	230968	hom	ref	=	=	=											21						1.17	N
4552	2	chr1	230968	230983	no-call	complex	=	?	?											-215						1.17	N
4553	2	chr1	230983	230989	hom	ref	=	=	=											10						1.17	N
4554	2	chr1	230989	231036	no-call	complex	=	?	?											-61						1.17	N
4555	2	chr1	231036	231042	hom	ref	=	=	=											57						1.17	N
4556	2	chr1	231042	231073	no-call	complex	=	?	?											-155						1.17	N
4557	2	chr1	231073	231087	hom	ref	=	=	=											21						1.17	N
4558	2	chr1	231087	231094	no-call	complex	=	?	?											-136						1.17	N
4559	2	chr1	231094	231119	hom	ref	=	=	=											21						1.17	N
4560	2	chr1	231119	231160	no-call	complex	=	?	?											-183						1.17	N
4561	2	chr1	231160	231171	hom	ref	=	=	=											40						1.17	N
4562	2	chr1	231171	231178	no-call	complex	=	?	?											-74						1.17	N
4563	2	chr1	231178	231201	hom	ref	=	=	=											30						1.17	N
4564	2	chr1	231201	231232	no-call	complex	=	?	?											-173						1.17	N
4565	2	chr1	231232	231242	hom	ref	=	=	=											38						1.17	N
4566	2	chr1	231242	231250	no-call	complex	=	?	?											-407						1.17	N
4567	2	chr1	231250	231303	hom	ref	=	=	=											19						1.17	N
4568	2	chr1	231303	231329	no-call	complex	=	?	?											-114						1.17	N
4569	2	chr1	231329	231361	hom	ref	=	=	=											8						1.17	N
4570	2	chr1	231361	231397	no-call	complex	=	?	?											-77						1.17	N
4571	2	chr1	231397	231500	hom	ref	=	=	=											-23						1.17	N
4572	2	chr1	231500	231507	no-call	complex	=	?	?											-143						1.17	N
4573	2	chr1	231507	231560	hom	ref	=	=	=											27						1.17	N
4574	2	chr1	231560	231581	no-call	complex	=	?	?											-8						1.17	N
4575	2	chr1	231581	231671	hom	ref	=	=	=											15						1.17	N
4576	2	chr1	231671	231694	no-call	complex	=	?	?											-56						1.17	N
4577	2	chr1	231694	231781	hom	ref	=	=	=											1						1.17	N
4578	2	chr1	231781	231782	half	ref	A	A	N	169	169									1				L1MC3:L1:42.1	18	1.17	N
4579	2	chr1	231782	231813	hom	ref	=	=	=											1						1.17	N
4580	2	chr1	231813	231848	no-call	complex	=	?	?											-99						1.17	N
4581	2	chr1	231848	231936	hom	ref	=	=	=											12						1.17	N
4582	2	chr1	231936	231977	no-call	complex	=	?	?											-110						1.17	N
4583	2	chr1	231977	232048	hom	ref	=	=	=											20						1.17	N
4584	2	chr1	232048	232055	no-call	complex	=	?	?											-56						1.17	N
4585	2	chr1	232055	232164	hom	ref	=	=	=											0						1.17	N
4586	2	chr1	232164	232171	no-call	complex	=	?	?											-27						1.17	N
4587	2	chr1	232171	232204	hom	ref	=	=	=											16						1.17	N
4588	2	chr1	232204	232227	no-call	complex	=	?	?											-117						1.17	N
4589	2	chr1	232227	232430	hom	ref	=	=	=											-43						1.17	N
4590	2	chr1	232430	232475	no-call	complex	=	?	?											-34						1.17	N
4591	2	chr1	232475	232521	hom	ref	=	=	=											22						1.17	N
4592	2	chr1	232521	232545	no-call	complex	=	?	?											-46						1.17	N
4593	2	chr1	232545	232652	hom	ref	=	=	=											-16						1.17	N
4594	2	chr1	232652	232685	no-call	complex	=	?	?											-40						1.17	N
4595	2	chr1	232685	232782	hom	ref	=	=	=											-2						1.17	N
4596	2	chr1	232782	232823	no-call	complex	=	?	?											-30						1.17	N
4597	2	chr1	232823	232876	hom	ref	=	=	=											-13						1.17	N
4598	2	chr1	232876	232879	half	ref	CAA	CAA	NAN	120	120									18					20	1.17	N
4599	2	chr1	232879	232956	hom	ref	=	=	=											4						1.17	N
4600	2	chr1	232956	232993	no-call	complex	=	?	?											-37						1.17	N
4601	2	chr1	232993	233000	hom	ref	=	=	=											47						1.17	N
4602	2	chr1	233000	233007	no-call	complex	=	?	?											-138						1.17	N
4603	2	chr1	233007	233052	hom	ref	=	=	=											11						1.17	N
4604	2	chr1	233052	233089	no-call	complex	=	?	?											-120						1.17	N
4605	2	chr1	233089	233217	hom	ref	=	=	=											15						1.17	N
4606	2	chr1	233217	233224	no-call	complex	=	?	?											4						1.17	N
4607	2	chr1	233224	233351	hom	ref	=	=	=											-28						1.17	N
4608	2	chr1	233351	233352	half	ref	T	T	N	72	120									-21					21	1.17	N
4609	2	chr1	233352	233390	hom	ref	=	=	=											-21						1.17	N
4610	2	chr1	233390	233408	no-call	complex	=	?	?											-65						1.17	N
4611	2	chr1	233408	233472	hom	ref	=	=	=											-154						1.17	N
4612	2	chr1	233472	233473	het-ref	snp	C	G	C	118	118			dbsnp.130:rs66974659	1522	21	42	0	63	-154				MER4A1:ERV1:18.8	21	1.17	N
4613	2	chr1	233473	233511	hom	ref	=	=	=											-154						1.17	N
4614	2	chr1	233511	233557	no-call	complex	=	?	?											-72						1.17	N
4615	2	chr1	233557	233617	hom	ref	=	=	=											12						1.17	N
4616	2	chr1	233617	233662	no-call	complex	=	?	?											-74						1.17	N
4617	2	chr1	233662	233680	hom	ref	=	=	=											17						1.17	N
4618	2	chr1	233680	233704	no-call	complex	=	?	?											-316						1.17	N
4619	2	chr1	233704	233752	hom	ref	=	=	=											10						1.17	N
4620	2	chr1	233752	233785	no-call	complex	=	?	?											-101						1.17	N
4621	2	chr1	233785	233805	hom	ref	=	=	=											23						1.17	N
4622	2	chr1	233805	233847	no-call	complex	=	?	?											-54						1.17	N
4623	2	chr1	233847	234020	hom	ref	=	=	=											-18						1.17	N
4624	2	chr1	234020	234038	no-call	complex	=	?	?											-18						1.17	N
4625	2	chr1	234038	234077	hom	ref	=	=	=											36						1.17	N
4626	2	chr1	234077	234101	no-call	complex	=	?	?											-11						1.17	N
4627	2	chr1	234101	234146	hom	ref	=	=	=											11						1.17	N
4628	2	chr1	234146	234147	half	ref	C	C	N	120	120	2109	2110							11					20	1.17	N
4629	2	chr1	234147	234158	hom	ref	=	=	=											-24						1.17	N
4630	2	chr1	234158	234159	half	ref	A	A	N	120	120	2109	2110							-24					20	1.17	N
4631	2	chr1	234159	234187	hom	ref	=	=	=											-43						1.17	N
4632	2	chr1	234187	234188	half	ref	T	T	N	117	120									-43					19	1.17	N
4633	2	chr1	234188	234205	hom	ref	=	=	=											-43						1.17	N
4634	2	chr1	234205	234205	half	ref			?	50	0									15					19	1.17	N
4635	2	chr1	234205	234366	hom	ref	=	=	=											-10						1.17	N
4636	2	chr1	234366	234373	no-call	complex	=	?	?											-35						1.17	N
4637	2	chr1	234373	234442	hom	ref	=	=	=											29						1.17	N
4638	2	chr1	234442	234484	no-call	complex	=	?	?											-216						1.17	N
4639	2	chr1	234484	234538	hom	ref	=	=	=											22						1.17	N
4640	2	chr1	234538	234578	no-call	complex	=	?	?											-172						1.17	N
4641	2	chr1	234578	234591	hom	ref	=	=	=											58						1.17	N
4642	2	chr1	234591	234615	no-call	complex	=	?	?											-8						1.17	N
4643	2	chr1	234615	234709	hom	ref	=	=	=											-36						1.17	N
4644	2	chr1	234709	234716	no-call	complex	=	?	?											-34						1.17	N
4645	2	chr1	234716	234756	hom	ref	=	=	=											35						1.17	N
4646	2	chr1	234756	234763	no-call	complex	=	?	?											-50						1.17	N
4647	2	chr1	234763	235017	hom	ref	=	=	=											-38						1.17	N
4648	2	chr1	235017	235066	no-call	complex	=	?	?											-73						1.17	N
4649	2	chr1	235066	235088	hom	ref	=	=	=											-47						1.17	N
4650	2	chr1	235088	235088	half	ref			?	108	0									-47				MLT1I:ERVL-MaLR:40.6	17	1.17	N
4651	2	chr1	235088	235157	hom	ref	=	=	=											-47						1.17	N
4652	2	chr1	235157	235183	no-call	complex	=	?	?											-326						1.17	N
4653	2	chr1	235183	235199	hom	ref	=	=	=											45						1.17	N
4654	2	chr1	235199	235217	no-call	complex	=	?	?											-22						1.17	N
4655	2	chr1	235217	235420	hom	ref	=	=	=											-40						1.17	N
4656	2	chr1	235420	235428	no-call	complex	=	?	?											-115						1.17	N
4657	2	chr1	235428	235840	hom	ref	=	=	=											11						1.17	N
4658	2	chr1	235840	235847	no-call	complex	=	?	?											-418						1.17	N
4659	2	chr1	235847	235916	hom	ref	=	=	=											38						1.17	N
4660	2	chr1	235916	235932	no-call	complex	=	?	?											-174						1.17	N
4661	2	chr1	235932	235972	hom	ref	=	=	=											38						1.17	N
4662	2	chr1	235972	235979	no-call	complex	=	?	?											-172						1.17	N
4663	2	chr1	235979	236256	hom	ref	=	=	=											-31						1.17	N
4664	2	chr1	236256	236289	no-call	complex	=	?	?											-55						1.17	N
4665	2	chr1	236289	236302	hom	ref	=	=	=											56						1.17	N
4666	2	chr1	236302	236309	no-call	complex	=	?	?											-126						1.17	N
4667	2	chr1	236309	236484	hom	ref	=	=	=											-11						1.17	N
4668	2	chr1	236484	236485	half	ref	C	C	N	122	122									-11				MLT1H2:ERVL-MaLR:28.7	7	1.17	N
4669	2	chr1	236485	236633	hom	ref	=	=	=											-11						1.17	N
4670	2	chr1	236633	236673	no-call	complex	=	?	?											-267						1.17	N
4671	2	chr1	236673	236684	hom	ref	=	=	=											10						1.17	N
4672	2	chr1	236684	236715	no-call	complex	=	?	?											-151						1.17	N
4673	2	chr1	236715	236726	hom	ref	=	=	=											16						1.17	N
4674	2	chr1	236726	236729	half	ref	GTT	GTT	?	33	0	2121	2122							4					7	1.17	N
4675	2	chr1	236729	236733	hom	ref	=	=	=											-4						1.17	N
4676	2	chr1	236733	236734	half	ref	T	T	?	123	0	2121	2122							-4					7	1.17	N
4677	2	chr1	236734	236782	hom	ref	=	=	=											-4						1.17	N
4678	2	chr1	236782	236796	no-call	complex	=	?	?											-228						1.17	N
4679	2	chr1	236796	236844	hom	ref	=	=	=											32						1.17	N
4680	2	chr1	236844	236851	no-call	complex	=	?	?											-261						1.17	N
4681	2	chr1	236851	236887	hom	ref	=	=	=											43						1.17	N
4682	2	chr1	236887	236894	no-call	complex	=	?	?											-86						1.17	N
4683	2	chr1	236894	237219	hom	ref	=	=	=											2						1.17	N
4684	2	chr1	237219	237226	no-call	complex	=	?	?											-104						1.17	N
4685	2	chr1	237226	237268	hom	ref	=	=	=											61						1.17	N
4686	2	chr1	237268	237305	no-call	complex	=	?	?											-252						1.17	N
4687	2	chr1	237305	237362	hom	ref	=	=	=											16						1.17	N
4688	2	chr1	237362	237369	no-call	complex	=	?	?											-46						1.17	N
4689	2	chr1	237369	237422	hom	ref	=	=	=											-28						1.17	N
4690	2	chr1	237422	237423	half	ref	T	T	N	76	126									-28				AluY:Alu:9.1	7	1.17	N
4691	2	chr1	237423	237486	hom	ref	=	=	=											-28						1.17	N
4692	2	chr1	237486	237493	no-call	complex	=	?	?											-114						1.17	N
4693	2	chr1	237493	237524	hom	ref	=	=	=											57						1.17	N
4694	2	chr1	237524	237567	no-call	complex	=	?	?											-52						1.17	N
4695	2	chr1	237567	237801	hom	ref	=	=	=											10						1.17	N
4696	2	chr1	237801	237808	no-call	complex	=	?	?											-24						1.17	N
4697	2	chr1	237808	237842	hom	ref	=	=	=											19						1.17	N
4698	2	chr1	237842	237884	no-call	complex	=	?	?											-17						1.17	N
4699	2	chr1	237884	237944	hom	ref	=	=	=											28						1.17	N
4700	2	chr1	237944	237969	no-call	complex	=	?	?											-61						1.17	N
4701	2	chr1	237969	238263	hom	ref	=	=	=											3						1.17	N
4702	2	chr1	238263	238270	no-call	complex	=	?	?											-36						1.17	N
4703	2	chr1	238270	238306	hom	ref	=	=	=											54						1.17	N
4704	2	chr1	238306	238313	no-call	complex	=	?	?											-11						1.17	N
4705	2	chr1	238313	238580	hom	ref	=	=	=											-16						1.17	N
4706	2	chr1	238580	238587	no-call	complex	=	?	?											-214						1.17	N
4707	2	chr1	238587	238986	hom	ref	=	=	=											-18						1.17	N
4708	2	chr1	238986	239020	no-call	complex	=	?	?											-18						1.17	N
4709	2	chr1	239020	239118	hom	ref	=	=	=											33						1.17	N
4710	2	chr1	239118	239125	no-call	complex	=	?	?											-39						1.17	N
4711	2	chr1	239125	239210	hom	ref	=	=	=											26						1.17	N
4712	2	chr1	239210	239243	no-call	complex	=	?	?											-58						1.17	N
4713	2	chr1	239243	239506	hom	ref	=	=	=											-23						1.17	N
4714	2	chr1	239506	239535	no-call	complex	=	?	?											-279						1.17	N
4715	2	chr1	239535	239692	hom	ref	=	=	=											-32						1.17	N
4716	2	chr1	239692	239738	no-call	complex	=	?	?											-63						1.17	N
4717	2	chr1	239738	239896	hom	ref	=	=	=											-18						1.17	N
4718	2	chr1	239896	239936	no-call	complex	=	?	?											-114						1.17	N
4719	2	chr1	239936	240232	hom	ref	=	=	=											-19						1.17	N
4720	2	chr1	240232	240245	no-call	complex	=	?	?											-61						1.17	N
4721	2	chr1	240245	240388	hom	ref	=	=	=											-19						1.17	N
4722	2	chr1	240388	240389	half	ref	C	C	N	58	120									-19					14	1.17	N
4723	2	chr1	240389	240566	hom	ref	=	=	=											-19						1.17	N
4724	2	chr1	240566	240567	half	ref	G	G	N	82	122									34				L2:L2:41.6	14	1.17	N
4725	2	chr1	240567	240849	hom	ref	=	=	=											-87						1.17	N
4726	2	chr1	240849	240879	no-call	complex	=	?	?											-125						1.17	N
4727	2	chr1	240879	240892	hom	ref	=	=	=											27						1.17	N
4728	2	chr1	240892	240901	no-call	complex	=	?	?											-111						1.17	N
4729	2	chr1	240901	240976	hom	ref	=	=	=											-11						1.17	N
4730	2	chr1	240976	240977	half	ref	T	T	N	226	226									-11				MLT1H:ERVL-MaLR:42.0	14	1.17	N
4731	2	chr1	240977	241023	hom	ref	=	=	=											-11						1.17	N
4732	2	chr1	241023	241030	no-call	complex	=	?	?											-94						1.17	N
4733	2	chr1	241030	241132	hom	ref	=	=	=											30						1.17	N
4734	2	chr1	241132	241184	no-call	complex	=	?	?											-37						1.17	N
4735	2	chr1	241184	241190	hom	ref	=	=	=											14						1.17	N
4736	2	chr1	241190	241197	no-call	complex	=	?	?											-109						1.17	N
4737	2	chr1	241197	241236	hom	ref	=	=	=											28						1.17	N
4738	2	chr1	241236	241255	no-call	complex	=	?	?											-35						1.17	N
4739	2	chr1	241255	241316	hom	ref	=	=	=											-4						1.17	N
4740	2	chr1	241316	241385	no-call	complex	=	?	?											-80						1.17	N
4741	2	chr1	241385	241423	hom	ref	=	=	=											34						1.17	N
4742	2	chr1	241423	241430	no-call	complex	=	?	?											-34						1.17	N
4743	2	chr1	241430	241523	hom	ref	=	=	=											13						1.17	N
4744	2	chr1	241523	241530	no-call	complex	=	?	?											-78						1.17	N
4745	2	chr1	241530	241930	hom	ref	=	=	=											-19						1.17	N
4746	2	chr1	241930	241960	no-call	complex	=	?	?											-24						1.17	N
4747	2	chr1	241960	242032	hom	ref	=	=	=											-23						1.17	N
4748	2	chr1	242032	242033	half	ref	C	C	N	120	120	2133	2134							25					14	1.17	N
4749	2	chr1	242033	242060	hom	ref	=	=	=											-29						1.17	N
4750	2	chr1	242060	242061	half	ref	C	C	N	68	120	2133	2134							-29					14	1.17	N
4751	2	chr1	242061	242264	hom	ref	=	=	=											-29						1.17	N
4752	2	chr1	242264	242271	no-call	complex	=	?	?											-118						1.17	N
4753	2	chr1	242271	242306	hom	ref	=	=	=											14						1.17	N
4754	2	chr1	242306	242338	no-call	complex	=	?	?											-50						1.17	N
4755	2	chr1	242338	242506	hom	ref	=	=	=											3						1.17	N
4756	2	chr1	242506	242517	no-call	complex	=	?	?											0						1.17	N
4757	2	chr1	242517	242563	hom	ref	=	=	=											33						1.17	N
4758	2	chr1	242563	242604	no-call	complex	=	?	?											-10						1.17	N
4759	2	chr1	242604	242706	hom	ref	=	=	=											18						1.17	N
4760	2	chr1	242706	242743	no-call	complex	=	?	?											-152						1.17	N
4761	2	chr1	242743	242797	hom	ref	=	=	=											13						1.17	N
4762	2	chr1	242797	242804	no-call	complex	=	?	?											-3						1.17	N
4763	2	chr1	242804	242946	hom	ref	=	=	=											1						1.17	N
4764	2	chr1	242946	242946	half	ref			?	27	0	2143	2144							1					14	1.17	N
4765	2	chr1	242946	242959	hom	ref	=	=	=											-6						1.17	N
4766	2	chr1	242959	242960	half	ref	T	T	N	36	120	2143	2144							-6					14	1.17	N
4767	2	chr1	242960	243070	hom	ref	=	=	=											-14						1.17	N
4768	2	chr1	243070	243077	no-call	complex	=	?	?											-10						1.17	N
4769	2	chr1	243077	243132	hom	ref	=	=	=											15						1.17	N
4770	2	chr1	243132	243140	no-call	complex	=	?	?											1						1.17	N
4771	2	chr1	243140	243149	hom	ref	=	=	=											15						1.17	N
4772	2	chr1	243149	243190	no-call	complex	=	?	?											-129						1.17	N
4773	2	chr1	243190	243352	hom	ref	=	=	=											-16						1.17	N
4774	2	chr1	243352	243390	no-call	complex	=	?	?											-101						1.17	N
4775	2	chr1	243390	243503	hom	ref	=	=	=											-49						1.17	N
4776	2	chr1	243503	243504	half	ref	G	G	N	121	121									-31					14	1.17	N
4777	2	chr1	243504	243691	hom	ref	=	=	=											-31						1.17	N
4778	2	chr1	243691	243692	half	ref	A	A	N	76	121									12					14	1.17	N
4779	2	chr1	243692	243799	hom	ref	=	=	=											-4						1.17	N
4780	2	chr1	243799	243806	no-call	complex	=	?	?											-13						1.17	N
4781	2	chr1	243806	244191	hom	ref	=	=	=											-18						1.17	N
4782	2	chr1	244191	244207	no-call	complex	=	?	?											-6						1.17	N
4783	2	chr1	244207	244284	hom	ref	=	=	=											15						1.17	N
4784	2	chr1	244284	244291	no-call	complex	=	?	?											-39						1.17	N
4785	2	chr1	244291	244695	hom	ref	=	=	=											-25						1.17	N
4786	2	chr1	244695	244721	no-call	complex	=	?	?											-88						1.17	N
4787	2	chr1	244721	244788	hom	ref	=	=	=											18						1.17	N
4788	2	chr1	244788	244819	no-call	complex	=	?	?											-87						1.17	N
4789	2	chr1	244819	244843	hom	ref	=	=	=											14						1.17	N
4790	2	chr1	244843	244852	no-call	complex	=	?	?											-1						1.17	N
4791	2	chr1	244852	244966	hom	ref	=	=	=											-90						1.17	N
4792	2	chr1	244966	244966	half	ref			?	34	0									-90					14	1.17	N
4793	2	chr1	244966	245020	hom	ref	=	=	=											-90						1.17	N
4794	2	chr1	245020	245027	no-call	complex	=	?	?											-471						1.17	N
4795	2	chr1	245027	245128	hom	ref	=	=	=											13						1.17	N
4796	2	chr1	245128	245143	no-call	complex	=	?	?											-287						1.17	N
4797	2	chr1	245143	245198	hom	ref	=	=	=											10						1.17	N
4798	2	chr1	245198	245245	no-call	complex	=	?	?											-103						1.17	N
4799	2	chr1	245245	245257	hom	ref	=	=	=											40						1.17	N
4800	2	chr1	245257	245268	no-call	complex	=	?	?											-139						1.17	N
4801	2	chr1	245268	245330	hom	ref	=	=	=											15						1.17	N
4802	2	chr1	245330	245381	no-call	complex	=	?	?											-248						1.17	N
4803	2	chr1	245381	245400	hom	ref	=	=	=											12						1.17	N
4804	2	chr1	245400	245458	no-call	complex	=	?	?											-280						1.17	N
4805	2	chr1	245458	245559	hom	ref	=	=	=											0						1.17	N
4806	2	chr1	245559	245581	no-call	complex	=	?	?											-12						1.17	N
4807	2	chr1	245581	245620	hom	ref	=	=	=											22						1.17	N
4808	2	chr1	245620	245643	no-call	complex	=	?	?											-125						1.17	N
4809	2	chr1	245643	245853	hom	ref	=	=	=											0						1.17	N
4810	2	chr1	245853	245884	no-call	complex	=	?	?											-32						1.17	N
4811	2	chr1	245884	245929	hom	ref	=	=	=											-65						1.17	N
4812	2	chr1	245929	245929	half	ref			?	34	0									-64					14	1.17	N
4813	2	chr1	245929	246067	hom	ref	=	=	=											-64						1.17	N
4814	2	chr1	246067	246087	no-call	complex	=	?	?											-158						1.17	N
4815	2	chr1	246087	246142	hom	ref	=	=	=											5						1.17	N
4816	2	chr1	246142	246192	no-call	complex	=	?	?											-96						1.17	N
4817	2	chr1	246192	246222	hom	ref	=	=	=											27						1.17	N
4818	2	chr1	246222	246235	no-call	complex	=	?	?											-18						1.17	N
4819	2	chr1	246235	246556	hom	ref	=	=	=											-18						1.17	N
4820	2	chr1	246556	246586	no-call	complex	=	?	?											-6						1.17	N
4821	2	chr1	246586	246642	hom	ref	=	=	=											10						1.17	N
4822	2	chr1	246642	246667	no-call	complex	=	?	?											-43						1.17	N
4823	2	chr1	246667	246801	hom	ref	=	=	=											24						1.17	N
4824	2	chr1	246801	246818	no-call	complex	=	?	?											-228						1.17	N
4825	2	chr1	246818	246973	hom	ref	=	=	=											6						1.17	N
4826	2	chr1	246973	247001	no-call	complex	=	?	?											-126						1.17	N
4827	2	chr1	247001	247171	hom	ref	=	=	=											10						1.17	N
4828	2	chr1	247171	247196	no-call	complex	=	?	?											-133						1.17	N
4829	2	chr1	247196	247297	hom	ref	=	=	=											-20						1.17	N
4830	2	chr1	247297	247298	half	ref	A	A	N	120	70									-20					14	1.17	N
4831	2	chr1	247298	247408	hom	ref	=	=	=											-20						1.17	N
4832	2	chr1	247408	247431	no-call	complex	=	?	?											-7						1.17	N
4833	2	chr1	247431	247538	hom	ref	=	=	=											10						1.17	N
4834	2	chr1	247538	247566	no-call	complex	=	?	?											-24						1.17	N
4835	2	chr1	247566	247581	hom	ref	=	=	=											32						1.17	N
4836	2	chr1	247581	247606	no-call	complex	=	?	?											-34						1.17	N
4837	2	chr1	247606	247648	hom	ref	=	=	=											23						1.17	N
4838	2	chr1	247648	247687	no-call	complex	=	?	?											-22						1.17	N
4839	2	chr1	247687	247715	hom	ref	=	=	=											-10						1.17	N
4840	2	chr1	247715	247715	half	ref			?	20	0	2175	2176							-9					14	1.17	N
4841	2	chr1	247715	247718	hom	ref	=	=	=											-9						1.17	N
4842	2	chr1	247718	247719	half	ref	T	T	N	89	89	2175	2176							-2					14	1.17	N
4843	2	chr1	247719	247884	hom	ref	=	=	=											-2						1.17	N
4844	2	chr1	247884	247891	no-call	complex	=	?	?											-188						1.17	N
4845	2	chr1	247891	247910	hom	ref	=	=	=											4						1.17	N
4846	2	chr1	247910	247911	half	ref	A	A	N	29	39	2177	2178							4				AluJr:Alu:23.8	14	1.17	N
4847	2	chr1	247911	247920	hom	ref	=	=	=											4						1.17	N
4848	2	chr1	247920	247922	half	ref	GT	GT	?	71	0	2177	2178							17				AluJr:Alu:23.8	14	1.17	N
4849	2	chr1	247922	247925	hom	ref	=	=	=											23						1.17	N
4850	2	chr1	247925	247926	half	ref	G	G	?	55	0	2177	2178							8				AluJr:Alu:23.8	14	1.17	N
4851	2	chr1	247926	247936	hom	ref	=	=	=											6						1.17	N
4852	2	chr1	247936	247937	half	ref	A	A	N	58	85	2177	2178							3				AluJr:Alu:23.8	14	1.17	N
4853	2	chr1	247937	247945	hom	ref	=	=	=											3						1.17	N
4854	2	chr1	247945	247947	half	ref	CA	CA	?	75	0	2177	2178							37				AluJr:Alu:23.8	14	1.17	N
4855	2	chr1	247947	247987	hom	ref	=	=	=											9						1.17	N
4856	2	chr1	247987	248010	no-call	complex	=	?	?											-63						1.17	N
4857	2	chr1	248010	248028	hom	ref	=	=	=											20						1.17	N
4858	2	chr1	248028	248055	no-call	complex	=	?	?											-21						1.17	N
4859	2	chr1	248055	248108	hom	ref	=	=	=											16						1.17	N
4860	2	chr1	248108	248133	no-call	complex	=	?	?											-11						1.17	N
4861	2	chr1	248133	248194	hom	ref	=	=	=											16						1.17	N
4862	2	chr1	248194	248234	no-call	complex	=	?	?											-304						1.17	N
4863	2	chr1	248234	248255	hom	ref	=	=	=											-92						1.17	N
4864	2	chr1	248255	248256	half	ref	C	C	?	60	0									-92				AluSx:Alu:14.3	14	1.17	N
4865	2	chr1	248256	248300	hom	ref	=	=	=											-92						1.17	N
4866	2	chr1	248300	248323	no-call	complex	=	?	?											-84						1.17	N
4867	2	chr1	248323	248337	hom	ref	=	=	=											12						1.17	N
4868	2	chr1	248337	248344	no-call	complex	=	?	?											7						1.17	N
4869	2	chr1	248344	248646	hom	ref	=	=	=											-6						1.17	N
4870	2	chr1	248646	248653	no-call	complex	=	?	?											-169						1.17	N
4871	2	chr1	248653	248760	hom	ref	=	=	=											12						1.17	N
4872	2	chr1	248760	248761	half	ref	T	T	?	125	0									-22					14	1.17	N
4873	2	chr1	248761	248976	hom	ref	=	=	=											-22						1.17	N
4874	2	chr1	248976	248983	no-call	complex	=	?	?											-11						1.17	N
4875	2	chr1	248983	249103	hom	ref	=	=	=											45						1.17	N
4876	2	chr1	249103	249134	no-call	complex	=	?	?											-30						1.17	N
4877	2	chr1	249134	249263	hom	ref	=	=	=											-6						1.17	N
4878	2	chr1	249263	249309	no-call	complex	=	?	?											-159						1.17	N
4879	2	chr1	249309	249323	hom	ref	=	=	=											-13						1.17	N
4880	2	chr1	249323	249324	half	ref	A	A	N	155	155									-13				AluSx:Alu:12.1	14	1.17	N
4881	2	chr1	249324	249400	hom	ref	=	=	=											-13						1.17	N
4882	2	chr1	249400	249426	no-call	complex	=	?	?											-22						1.17	N
4883	2	chr1	249426	249501	hom	ref	=	=	=											11						1.17	N
4884	2	chr1	249501	249519	no-call	complex	=	?	?											-33						1.17	N
4885	2	chr1	249519	249554	hom	ref	=	=	=											11						1.17	N
4886	2	chr1	249554	249561	no-call	complex	=	?	?											-45						1.17	N
4887	2	chr1	249561	249697	hom	ref	=	=	=											-28						1.17	N
4888	2	chr1	249697	249705	no-call	complex	=	?	?											-44						1.17	N
4889	2	chr1	249705	249788	hom	ref	=	=	=											20						1.17	N
4890	2	chr1	249788	249795	no-call	complex	=	?	?											-145						1.17	N
4891	2	chr1	249795	249858	hom	ref	=	=	=											12						1.17	N
4892	2	chr1	249858	249889	no-call	complex	=	?	?											-69						1.17	N
4893	2	chr1	249889	249922	hom	ref	=	=	=											14						1.17	N
4894	2	chr1	249922	249952	no-call	complex	=	?	?											-45						1.17	N
4895	2	chr1	249952	250057	hom	ref	=	=	=											40						1.17	N
4896	2	chr1	250057	250079	no-call	complex	=	?	?											-500						1.17	N
4897	2	chr1	250079	250179	hom	ref	=	=	=											-33						1.17	N
4898	2	chr1	250179	250195	no-call	complex	=	?	?											-13						1.17	N
4899	2	chr1	250195	250299	hom	ref	=	=	=											-3						1.17	N
4900	2	chr1	250299	250300	half	ref	C	C	N	94	120									-3				MSTB1:ERVL-MaLR:24.9	15	1.17	N
4901	2	chr1	250300	250331	hom	ref	=	=	=											-3						1.17	N
4902	2	chr1	250331	250353	no-call	complex	=	?	?											-197						1.17	N
4903	2	chr1	250353	250385	hom	ref	=	=	=											29						1.17	N
4904	2	chr1	250385	250428	no-call	complex	=	?	?											-645						1.17	N
4905	2	chr1	250428	250473	hom	ref	=	=	=											13						1.17	N
4906	2	chr1	250473	250518	no-call	complex	=	?	?											-80						1.17	N
4907	2	chr1	250518	250536	hom	ref	=	=	=											23						1.17	N
4908	2	chr1	250536	250561	no-call	complex	=	?	?											-88						1.17	N
4909	2	chr1	250561	250619	hom	ref	=	=	=											41						1.17	N
4910	2	chr1	250619	250667	no-call	complex	=	?	?											-549						1.17	N
4911	2	chr1	250667	250722	hom	ref	=	=	=											27						1.17	N
4912	2	chr1	250722	250729	no-call	complex	=	?	?											-822						1.17	N
4913	2	chr1	250729	250863	hom	ref	=	=	=											6						1.17	N
4914	2	chr1	250863	250870	no-call	complex	=	?	?											-497						1.17	N
4915	2	chr1	250870	250925	hom	ref	=	=	=											36						1.17	N
4916	2	chr1	250925	250950	no-call	complex	=	?	?											-52						1.17	N
4917	2	chr1	250950	251008	hom	ref	=	=	=											23						1.17	N
4918	2	chr1	251008	251038	no-call	complex	=	?	?											-112						1.17	N
4919	2	chr1	251038	251139	hom	ref	=	=	=											18						1.17	N
4920	2	chr1	251139	251177	no-call	complex	=	?	?											-52						1.17	N
4921	2	chr1	251177	251253	hom	ref	=	=	=											23						1.17	N
4922	2	chr1	251253	251268	no-call	complex	=	?	?											-76						1.17	N
4923	2	chr1	251268	251434	hom	ref	=	=	=											8						1.17	N
4924	2	chr1	251434	251441	no-call	complex	=	?	?											-946						1.17	N
4925	2	chr1	251441	251492	hom	ref	=	=	=											30						1.17	N
4926	2	chr1	251492	251513	no-call	complex	=	?	?											-341						1.17	N
4927	2	chr1	251513	251524	hom	ref	=	=	=											45						1.17	N
4928	2	chr1	251524	251539	no-call	complex	=	?	?											-118						1.17	N
4929	2	chr1	251539	251590	hom	ref	=	=	=											25						1.17	N
4930	2	chr1	251590	251597	no-call	complex	=	?	?											-372						1.17	N
4931	2	chr1	251597	251624	hom	ref	=	=	=											60						1.17	N
4932	2	chr1	251624	251666	no-call	complex	=	?	?											-251						1.17	N
4933	2	chr1	251666	251747	hom	ref	=	=	=											47						1.17	N
4934	2	chr1	251747	251763	no-call	complex	=	?	?											-104						1.17	N
4935	2	chr1	251763	251790	hom	ref	=	=	=											47						1.17	N
4936	2	chr1	251790	251807	no-call	complex	=	?	?											-1220						1.17	N
4937	2	chr1	251807	251925	hom	ref	=	=	=											11						1.17	N
4938	2	chr1	251925	251952	no-call	complex	=	?	?											-286						1.17	N
4939	2	chr1	251952	252011	hom	ref	=	=	=											22						1.17	N
4940	2	chr1	252011	252034	no-call	complex	=	?	?											-554						1.17	N
4941	2	chr1	252034	252043	hom	ref	=	=	=											32						1.17	N
4942	2	chr1	252043	252055	no-call	complex	=	?	?											-117						1.17	N
4943	2	chr1	252055	252088	hom	ref	=	=	=											18						1.17	N
4944	2	chr1	252088	252109	no-call	complex	=	?	?											-336						1.17	N
4945	2	chr1	252109	252178	hom	ref	=	=	=											41						1.17	N
4946	2	chr1	252178	252208	no-call	complex	=	?	?											-173						1.17	N
4947	2	chr1	252208	252288	hom	ref	=	=	=											-16						1.17	N
4948	2	chr1	252288	252306	no-call	complex	=	?	?											-65						1.17	N
4949	2	chr1	252306	252329	hom	ref	=	=	=											14						1.17	N
4950	2	chr1	252329	252374	no-call	complex	=	?	?											-323						1.17	N
4951	2	chr1	252374	252468	hom	ref	=	=	=											0						1.17	N
4952	2	chr1	252468	252482	no-call	complex	=	?	?											-203						1.17	N
4953	2	chr1	252482	252635	hom	ref	=	=	=											23						1.17	N
4954	2	chr1	252635	252662	no-call	complex	=	?	?											-295						1.17	N
4955	2	chr1	252662	252675	hom	ref	=	=	=											38						1.17	N
4956	2	chr1	252675	252682	no-call	complex	=	?	?											-13						1.17	N
4957	2	chr1	252682	252721	hom	ref	=	=	=											11						1.17	N
4958	2	chr1	252721	252752	no-call	complex	=	?	?											-257						1.17	N
4959	2	chr1	252752	252792	hom	ref	=	=	=											31						1.17	N
4960	2	chr1	252792	252806	no-call	complex	=	?	?											-362						1.17	N
4961	2	chr1	252806	252849	hom	ref	=	=	=											31						1.17	N
4962	2	chr1	252849	252882	no-call	complex	=	?	?											-193						1.17	N
4963	2	chr1	252882	252915	hom	ref	=	=	=											-60						1.17	N
4964	2	chr1	252915	252915	half	ref			?	61	0									-59					10	1.17	N
4965	2	chr1	252915	252952	hom	ref	=	=	=											-59						1.17	N
4966	2	chr1	252952	252991	no-call	complex	=	?	?											-373						1.17	N
4967	2	chr1	252991	253167	hom	ref	=	=	=											18						1.17	N
4968	2	chr1	253167	253203	no-call	complex	=	?	?											-108						1.17	N
4969	2	chr1	253203	253224	hom	ref	=	=	=											73						1.17	N
4970	2	chr1	253224	253270	no-call	complex	=	?	?											-1017						1.17	N
4971	2	chr1	253270	253281	hom	ref	=	=	=											51						1.17	N
4972	2	chr1	253281	253288	no-call	complex	=	?	?											-32						1.17	N
4973	2	chr1	253288	253470	hom	ref	=	=	=											-37						1.17	N
4974	2	chr1	253470	253471	half	ref	C	C	N	76	120									35					10	1.17	N
4975	2	chr1	253471	253546	hom	ref	=	=	=											35						1.17	N
4976	2	chr1	253546	253590	no-call	complex	=	?	?											-235						1.17	N
4977	2	chr1	253590	253663	hom	ref	=	=	=											52						1.17	N
4978	2	chr1	253663	253670	no-call	complex	=	?	?											-287						1.17	N
4979	2	chr1	253670	253775	hom	ref	=	=	=											23						1.17	N
4980	2	chr1	253775	253782	no-call	complex	=	?	?											-207						1.17	N