view command-line-arguments.csv @ 0:a42e58c71e5b draft default tip

planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
author mingchen0919
date Sun, 30 Dec 2018 12:55:49 -0500
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short flag,argument mask,data type,variable name
o,1,character,report
d,1,character,report.files_path
A,1,character,first_reads
B,1,character,second_reads
x,1,character,adapter_first_reads
y,1,character,adapter_second_reads
m,1,character,trimming_mode
r,1,character,maximum_allowed_error_rate
D,1,character,maximum_allowed_indel_error_rate
q,1,character,quality_trimming_3_end
Q,1,character,mean_quality
l,1,character,minimum_read_length
j,1,character,advanced_options.junction_adapter
M,1,character,advanced_options.tab_adapter
b,1,character,advanced_options.barcode
c,1,character,advanced_options.cut
n,1,character,advanced_options.filter_degenerative_reads
u,1,character,advanced_options.filter_undetermined_mate_pair_reads
f,1,character,advanced_options.format
z,1,character,advanced_options.compress
E,1,character,advanced_options.qiime
F,1,character,advanced_options.quiet
i,1,character,advanced_options.intelligent
1,1,character,trimmed_r1
2,1,character,trimmed_r2
3,1,character,trimmed_s