Mercurial > repos > mingchen0919 > rmarkdown_fastqc_report

changeset 5:3b275377dd27 draft

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planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_fastqc_report commit 9285c2b8ad41a486dde2a87600a6b8267841c8b5
author mingchen0919
date Tue, 08 Aug 2017 10:33:14 -0400
parents 3073b7bd0807
children e629c2288316
files fastqc_report.xml
diffstat 1 files changed, 37 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/fastqc_report.xml	Tue Aug 08 09:36:33 2017 -0400
+++ b/fastqc_report.xml	Tue Aug 08 10:33:14 2017 -0400
@@ -52,12 +52,10 @@
     </outputs>
     <citations>
         <citation type="bibtex">
-            @unpublished{andrews_s,
-                author = {Andrews, S.},
-                keywords = {bioinformatics, ngs, qc},
-                priority = {2},
-                title = {{FastQC A Quality Control tool for High Throughput Sequence Data}},
-                url = {http://www.bioinformatics.babraham.ac.uk/projects/fastqc/}
+            @misc{bioinformatics2014fastqc,
+            title={FastQC},
+            author={Bioinformatics, Babraham},
+            year={2014}
             }
         </citation>
         <citation type="bibtex">
@@ -69,6 +67,39 @@
             year={2016}
             }
         </citation>
+        <citation>
+            @book{xie2015dynamic,
+            title={Dynamic Documents with R and knitr},
+            author={Xie, Yihui},
+            volume={29},
+            year={2015},
+            publisher={CRC Press}
+            }
+        </citation>
+        <citation>
+            @misc{sievertplotly,
+            title={plotly: Create Interactive Web Graphics via’plotly. js’. 2016. R package version 3.6. 0},
+            author={Sievert, C and Parmer, C and Hocking, T and Chamberlain, S and Ram, K and Corvellec, M and Despouy, P}
+            }
+        </citation>
+        <citation>
+            @Manual{,
+            title = {highcharter: A Wrapper for the 'Highcharts' Library},
+            author = {Joshua Kunst},
+            year = {2017},
+            note = {R package version 0.5.0},
+            url = {https://CRAN.R-project.org/package=highcharter},
+            }
+        </citation>
+        <citation>
+            @Manual{,
+            title = {formattable: Create 'Formattable' Data Structures},
+            author = {Kun Ren and Kenton Russell},
+            year = {2016},
+            note = {R package version 0.2.0.1},
+            url = {https://CRAN.R-project.org/package=formattable},
+            }
+        </citation>
     </citations>
 </tool>