|
5
|
1 <tool id="fastabox" name="FASTA from text" version="1.0.0">
|
|
|
2 <description>Simple creation of FASTA file from text area field.</description>
|
|
|
3 <requirements>
|
|
|
4 <requirement type="set_environment">INTERPROSCAN_SCRIPT_PATH</requirement>
|
|
|
5 </requirements>
|
|
|
6
|
|
|
7 <command>
|
|
|
8 echo '$textbox' > $output
|
|
|
9 </command>
|
|
|
10
|
|
|
11 <inputs>
|
|
|
12 <param name="dataset_label" type="text" size="60" label="Dataset label"/>
|
|
|
13 <param name="textbox" type="text" area="True" size="20x60" label="FASTA formatted sequence(s)"/>
|
|
|
14 </inputs>
|
|
|
15
|
|
|
16 <outputs>
|
|
|
17 <data format="fasta" name="output" label="${dataset_label}"/>
|
|
|
18 </outputs>
|
|
|
19
|
|
|
20 <requirements>
|
|
|
21 </requirements>
|
|
|
22
|
|
|
23 <help>
|
|
|
24
|
|
|
25 **What it does**
|
|
|
26
|
|
|
27 Simply creates a FASTA dataset from a text input field. This is useful for a workflow where a tool needs a FASTA input,
|
|
|
28 and the user should not be required to get the dataset into their history by something more complicated
|
|
|
29 than direct input.
|
|
|
30
|
|
|
31
|
|
|
32 #####
|
|
|
33 Input
|
|
|
34 #####
|
|
|
35
|
|
|
36 Required is a FASTA formatted text containing protein or nucleotide sequences.
|
|
|
37
|
|
|
38
|
|
|
39 ######
|
|
|
40 Output
|
|
|
41 ######
|
|
|
42
|
|
|
43 A FASTA file.
|
|
|
44 </help>
|
|
|
45 </tool>
|
