Mercurial > repos > mkh > ips5
comparison interproscan5/fastabox.xml @ 5:b2fe58084928 draft
Added fastabox uploader.
author | mkh |
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date | Fri, 05 Feb 2016 12:08:47 -0500 |
parents | |
children | 3cb68964c2a8 |
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4:6574eb46426d | 5:b2fe58084928 |
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1 <tool id="fastabox" name="FASTA from text" version="1.0.0"> | |
2 <description>Simple creation of FASTA file from text area field.</description> | |
3 <requirements> | |
4 <requirement type="set_environment">INTERPROSCAN_SCRIPT_PATH</requirement> | |
5 </requirements> | |
6 | |
7 <command> | |
8 echo '$textbox' > $output | |
9 </command> | |
10 | |
11 <inputs> | |
12 <param name="dataset_label" type="text" size="60" label="Dataset label"/> | |
13 <param name="textbox" type="text" area="True" size="20x60" label="FASTA formatted sequence(s)"/> | |
14 </inputs> | |
15 | |
16 <outputs> | |
17 <data format="fasta" name="output" label="${dataset_label}"/> | |
18 </outputs> | |
19 | |
20 <requirements> | |
21 </requirements> | |
22 | |
23 <help> | |
24 | |
25 **What it does** | |
26 | |
27 Simply creates a FASTA dataset from a text input field. This is useful for a workflow where a tool needs a FASTA input, | |
28 and the user should not be required to get the dataset into their history by something more complicated | |
29 than direct input. | |
30 | |
31 | |
32 ##### | |
33 Input | |
34 ##### | |
35 | |
36 Required is a FASTA formatted text containing protein or nucleotide sequences. | |
37 | |
38 | |
39 ###### | |
40 Output | |
41 ###### | |
42 | |
43 A FASTA file. | |
44 </help> | |
45 </tool> |