Mercurial > repos > mkh > ips5
view interproscan5/fastabox.xml @ 5:b2fe58084928 draft
Added fastabox uploader.
author | mkh |
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date | Fri, 05 Feb 2016 12:08:47 -0500 |
parents | |
children | 3cb68964c2a8 |
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<tool id="fastabox" name="FASTA from text" version="1.0.0"> <description>Simple creation of FASTA file from text area field.</description> <requirements> <requirement type="set_environment">INTERPROSCAN_SCRIPT_PATH</requirement> </requirements> <command> echo '$textbox' > $output </command> <inputs> <param name="dataset_label" type="text" size="60" label="Dataset label"/> <param name="textbox" type="text" area="True" size="20x60" label="FASTA formatted sequence(s)"/> </inputs> <outputs> <data format="fasta" name="output" label="${dataset_label}"/> </outputs> <requirements> </requirements> <help> **What it does** Simply creates a FASTA dataset from a text input field. This is useful for a workflow where a tool needs a FASTA input, and the user should not be required to get the dataset into their history by something more complicated than direct input. ##### Input ##### Required is a FASTA formatted text containing protein or nucleotide sequences. ###### Output ###### A FASTA file. </help> </tool>