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Untested version
author mkh
date Sat, 16 Jan 2016 12:30:10 -0500
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#!/usr/bin/env python

import os
import sys

o = open(sys.argv[1], 'w+')

o.write('<html> <body> <h1> InterProScan result summary page </h1> <ul>')

for filename in [f for f in os.listdir(sys.argv[2]) if os.path.isfile(os.path.join(sys.argv[2], f))]:
    o.write('<li><a href="%s"> %s </a></li>' % (filename, os.path.splitext(filename)[0]))

o.write('</ul></body></html>')
o.close()