Mercurial > repos > mnhn65mo > regionalgam
annotate gls-adjusted.R @ 0:5b126f770671 draft
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author | mnhn65mo |
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date | Fri, 03 Aug 2018 08:28:22 -0400 |
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children |
rev | line source |
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0 | 1 #!/usr/bin/env Rscript |
2 library(nlme) | |
3 library(MASS) | |
4 | |
5 args = commandArgs(trailingOnly=TRUE) | |
6 input1 = read.table(args[1], header=TRUE) #input1=col.index =glmmpql-output | |
7 input2 = read.table(args[2], header=TRUE,sep=" ") #input2=data.index =abundance_index-output | |
8 | |
9 input1<-as.matrix(input1) | |
10 | |
11 year <- unique(input2$YEAR) | |
12 mod <- gls(input1~year, correlation = corARMA(p=2)) | |
13 summary<-summary(mod) | |
14 | |
15 save(mod, file = "mod_adjusted.rda") | |
16 capture.output(summary, file="mod_adjusted-summary.txt") |