Mercurial > repos > mnhn65mo > regionalgam
annotate gls.R @ 0:5b126f770671 draft
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| author | mnhn65mo |
|---|---|
| date | Fri, 03 Aug 2018 08:28:22 -0400 |
| parents | |
| children |
| rev | line source |
|---|---|
| 0 | 1 #!/usr/bin/env Rscript |
| 2 library(nlme) | |
| 3 library(MASS) | |
| 4 | |
| 5 args = commandArgs(trailingOnly=TRUE) | |
| 6 input1 = read.table(args[1], header=TRUE) #input1=col.index =glmmpql-output | |
| 7 input2 = read.table(args[2], header=TRUE,sep=" ") #input2=data.index =abundance_index-output | |
| 8 | |
| 9 input1<-as.matrix(input1) | |
| 10 | |
| 11 year <- unique(input2$YEAR) | |
| 12 mod <- gls(input1~year) | |
| 13 summary<-summary(mod) | |
| 14 | |
| 15 save(mod, file = "mod.rda") | |
| 16 capture.output(summary, file="mod-summary.txt") |