Mercurial > repos > modencode-dcc > bamedit

changeset 7:77bb747ec994 draft

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Deleted selected files
author modencode-dcc
date Fri, 18 Jan 2013 14:50:00 -0500
parents cdd25df4b51d
children 3ff272201930
files tool_dependencies.xml
diffstat 1 files changed, 0 insertions(+), 27 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Fri Jan 18 14:48:02 2013 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,27 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-    <set_environment version="1.0">
-        <environment_variable name="SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable>
-    </set_environment>
-    <package name="samtools" version="0.1.12">
-        <install version="1.0">
-            <actions>
-                <action type="download_by_url">https://github.com/modENCODE-DCC/Galaxy/blob/master/tools/tool_shed_dependencies/bamedit/samtoolspkg.tar?raw=true</action>
-                <action type="shell_command">chmod ago+x samtools</action>
-                <action type="shell_command">chmod ago+x maq2sam-long</action>
-                <action type="move_file">
-                    <source>samtools</source>
-                    <destination>$INSTALL_DIR/bin</destination>
-                </action>
-                <action type="move_file">
-                    <source>maq2sam-long</source>
-                    <destination>$INSTALL_DIR/bin</destination>
-                </action>
-                 <action type="set_environment">
-                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
-                </action>
-            </actions>
-        </install>
-        <readme>Compiling SAMtools requires the ncurses and zlib development libraries.</readme>
-    </package>
-</tool_dependency>