annotate tool_dependencies.xml @ 6:784f269a4c29 draft

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 <?xml version="1.0"?>
<tool_dependency>
     3     <!--<set_environment version="1.0">
     4         <environment_variable name="SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable>
     5     </set_environment>-->
     <package name="macs2" version="2.0.10.2">
         <install version="1.0">
             <actions>
                <action type="download_by_url">https://github.com/modENCODE-DCC/Galaxy/blob/master/tools/tool_shed_dependencies/macs2/macs2pkg.tar?raw=true</action>
                <action type="move_directory_files">
                    <source_directory>bin</source_directory>
                    <destination_directory>$INSTALL_DIR/bin</destination_directory>
                </action>
                <action type="move_directory_files">
                    <source_directory>lib</source_directory>
                    <destination_directory>$INSTALL_DIR/lib</destination_directory>
                </action>
                <action type="set_environment">
                     <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                     <environment_variable name="PYTHONPATH" action="prepend_to">$INSTALL_DIR/lib/python2.7/site-packages</environment_variable>
                </action>
            </actions>
        </install>
        <readme>Macs2 depends on having python2.7 installed on all nodes of the work cluster</readme>
    </package>
</tool_dependency>