Mercurial > repos > mvdbeek > package_sra_toolkit_2_5_2
comparison tool_dependencies.xml @ 1:c7f1e87de5b7 draft default tip
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_sra_toolkit_2_5_2 commit 70fadb7e8972b1db550d0e067584930ce1ec8673-dirty
author | mvdbeek |
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date | Wed, 04 Nov 2015 07:09:56 -0500 |
parents | 88273fd00182 |
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0:88273fd00182 | 1:c7f1e87de5b7 |
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25 </repository> | 25 </repository> |
26 <repository changeset_revision="2cc3f1941cb5" name="package_ngs_sdk_1_1_3" owner="mvdbeek" toolshed="https://toolshed.g2.bx.psu.edu"> | 26 <repository changeset_revision="2cc3f1941cb5" name="package_ngs_sdk_1_1_3" owner="mvdbeek" toolshed="https://toolshed.g2.bx.psu.edu"> |
27 <package name="ngs_sdk" version="1.1.3" /> | 27 <package name="ngs_sdk" version="1.1.3" /> |
28 </repository> | 28 </repository> |
29 </action> | 29 </action> |
30 <action type="shell"> | 30 <action type="shell_command"> |
31 ./configure --prefix=$INSTALL_DIR -with-ngs-sdk-prefix=$NGS_SDK_DIR --with-ncbi-vdb-sources=$NCBI_VDB_DIR --with-ncbi-vdb-build=$NCBI_VDB_DIR --build=$INSTALL_DIR/build | 31 ./configure --prefix=$INSTALL_DIR -with-ngs-sdk-prefix=$NGS_SDK_DIR --with-ncbi-vdb-sources=$NCBI_VDB_DIR --with-ncbi-vdb-build=$NCBI_VDB_DIR --build=$INSTALL_DIR/build |
32 </action> | 32 </action> |
33 <action type="shell_command">sed -i -e "109s/-static//" tools/copycat/Makefile</action> | 33 <action type="shell_command"> |
34 <action type="make_install" /> | 34 sed -i -e "109s/-static//" tools/copycat/Makefile ; make ; make install |
35 </action> | |
35 <action type="set_environment"> | 36 <action type="set_environment"> |
36 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> | 37 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> |
37 </action> | 38 </action> |
38 </actions> | 39 </actions> |
39 </install> | 40 </install> |