Mercurial > repos > mvdbeek > package_sra_toolkit_2_5_2
diff tool_dependencies.xml @ 1:c7f1e87de5b7 draft default tip
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_sra_toolkit_2_5_2 commit 70fadb7e8972b1db550d0e067584930ce1ec8673-dirty
author | mvdbeek |
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date | Wed, 04 Nov 2015 07:09:56 -0500 |
parents | 88273fd00182 |
children |
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--- a/tool_dependencies.xml Wed Nov 04 06:51:59 2015 -0500 +++ b/tool_dependencies.xml Wed Nov 04 07:09:56 2015 -0500 @@ -27,11 +27,12 @@ <package name="ngs_sdk" version="1.1.3" /> </repository> </action> - <action type="shell"> + <action type="shell_command"> ./configure --prefix=$INSTALL_DIR -with-ngs-sdk-prefix=$NGS_SDK_DIR --with-ncbi-vdb-sources=$NCBI_VDB_DIR --with-ncbi-vdb-build=$NCBI_VDB_DIR --build=$INSTALL_DIR/build </action> - <action type="shell_command">sed -i -e "109s/-static//" tools/copycat/Makefile</action> - <action type="make_install" /> + <action type="shell_command"> + sed -i -e "109s/-static//" tools/copycat/Makefile ; make ; make install + </action> <action type="set_environment"> <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> </action>