diff trinityStats.xml @ 0:cc71440b759f draft default tip

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/trinityStats.xml	Tue Sep 22 01:58:00 2015 -0400
@@ -0,0 +1,25 @@
+<tool id='id_trinity_stats' name='Trinity Stats' version='1.0'>
+<description> check stats...  </description>
+
+<requirements>
+        <requirement type="package" version="2013_08_14">trinityrnaseq</requirement>
+        <requirement type="set_environment">TRINITY_HOME</requirement>
+
+</requirements>
+<command >perl \$TRINITY_HOME/util/TrinityStats.pl  $fastafile 
+&gt; $statsfile 2&gt;&amp;1;
+</command>
+
+<inputs>
+ <!-- Required -->
+
+  <param name='fastafile'  type="data" format="fasta"  label='fastafile' help='Assembled fasta file'>
+  </param>
+
+ <!-- Optional -->
+
+</inputs>
+<outputs>
+<data name='statsfile' format='text' label="${tool.name} on ${on_string}: "/>
+</outputs>
+</tool>