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author mytest
date Tue, 22 Sep 2015 01:58:00 -0400
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<tool id='id_trinity_stats' name='Trinity Stats' version='1.0'>
<description> check stats...  </description>

<requirements>
        <requirement type="package" version="2013_08_14">trinityrnaseq</requirement>
        <requirement type="set_environment">TRINITY_HOME</requirement>

</requirements>
<command >perl \$TRINITY_HOME/util/TrinityStats.pl  $fastafile 
&gt; $statsfile 2&gt;&amp;1;
</command>

<inputs>
 <!-- Required -->

  <param name='fastafile'  type="data" format="fasta"  label='fastafile' help='Assembled fasta file'>
  </param>

 <!-- Optional -->

</inputs>
<outputs>
<data name='statsfile' format='text' label="${tool.name} on ${on_string}: "/>
</outputs>
</tool>