view gtf2fasta.xml @ 0:0e434c9b5c06 draft default tip

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<tool id='id_gtf2fasta' name='gtf2fasta' version='1.0'>

<description>
        Converts gtf  to fasta
</description>
 <requirements>
 <requirement type="package" version="2.0.9">tophat2</requirement>
 </requirements>

<command >gtf_to_fasta $gtf $genome $fasta</command>

<inputs>
        <param name='gtf' type='data' format="gtf"  optional='false' label='gtf_file' help='input gtf file'/>
        <param name='genome' type='data' format="fasta" optional='false' label='genome_file' help='input genome'/>
</inputs>


<outputs>
        <data format='fasta' name='fasta' label='fasta file'/>
</outputs>


<help>
**What it does**
  Converts gtf file to fasta using reference genome

</help>

</tool>