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annotate test-data/genes-for-genotype.json @ 0:028a3ffc17b4 draft

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planemo upload commit b095175f34e78ceded24a6e1da99b328f50db86d
author nathandunn
date Fri, 23 Jun 2017 15:04:12 -0400
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028a3ffc17b4 planemo upload commit b095175f34e78ceded24a6e1da99b328f50db86d
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1 {"associations": [{"subject_extension": null, "slim": null, "publications": null, "object": {"xrefs": null, "taxon": {"label": "Homo sapiens", "id": "NCBITaxon:9606"}, "types": null, "categories": null, "replaced_by": null, "synonyms": null, "label": "BRCA1", "deprecated": null, "id": "NCBIGene:672", "description": null, "consider": null}, "id": "32abb1b1-8213-4205-ab6a-bfd96bac4c03", "type": null, "evidence_graph": {"nodes": [{"lbl": "BRCA1(ARG1443TER) [GM14637]", "id": "dbSNPIndividual:12141"}, {"lbl": "BRCA1, ARG1443TER", "id": "OMIM:113705.0016"}, {"lbl": "BRCA1(ARG1443TER)", "id": ":.well-known/genid/113705.0016"}, {"lbl": "BRCA1", "id": "NCBIGene:672"}], "edges": [{"sub": "dbSNPIndividual:12141", "pred": "GENO:0000382", "obj": ":.well-known/genid/113705.0016"}, {"sub": ":.well-known/genid/113705.0016", "pred": "GENO:0000382", "obj": "OMIM:113705.0016"}, {"sub": "OMIM:113705.0016", "pred": "GENO:0000408", "obj": "NCBIGene:672"}, {"sub": "OMIM:113705.0016", "pred": "GENO:0000408", "obj": "NCBIGene:672"}]}, "subject": {"xrefs": null, "taxon": {"label": "Homo sapiens", "id": "NCBITaxon:9606"}, "types": null, "categories": null, "replaced_by": null, "synonyms": null, "label": "BRCA1(ARG1443TER) [GM14637]", "deprecated": null, "id": "dbSNPIndividual:12141", "description": null, "consider": null}, "provided_by": ["https://data.planteomeinitiative.org/ttl/omim.ttl", "http://data.planteomeinitiative.org/ttl/coriell.ttl"], "relation": {"types": null, "categories": null, "replaced_by": null, "synonyms": null, "label": null, "deprecated": null, "id": null, "description": null, "consider": null}, "qualifiers": null, "object_extension": null, "evidence_types": null}], "compact_associations": null, "objects": ["NCBIGene:672"], "start": null, "numFound": null, "facet_pivot": null, "facet_counts": {"subject_taxon_label": {"Homo sapiens": 1}, "object_closure": {"OMIM:113705": 1, "Orphanet:119068": 1, "SO:0000001": 1, "owl:Thing": 1, "GENO:0000014": 1, "SO:0000110": 1, "BFO:0000001": 1, "SO:0001411": 1, "BFO:0000002": 1, "NCBIGene:672": 1, "SO:0000704": 1, "HGNC:1100": 1, "SO:0001217": 1, "GENO:0000701": 1, "KEGG-hsa:672": 1, "BFO:0000031": 1, "ENSEMBL:ENSG00000012048": 1}}}