changeset 5:5621523bbe56 draft

Uploaded

Binary file ngsplot_galaxytoolshed_v1.0/ngsplot-2.47.1.tar.gz has changed

--- a/ngsplot_galaxytoolshed_v1.0/ngsplot_main/ngsplot.xml	Thu Mar 19 13:51:36 2015 -0400
+++ b/ngsplot_galaxytoolshed_v1.0/ngsplot_main/ngsplot.xml	Thu Mar 19 16:51:28 2015 -0400
@@ -1,9 +1,5 @@
 <tool id="ngs.plot" name="ngs.plot">
 
-<requirements>
-    <requirement type="package" version="2.47.1">ngsplot</requirement>
-</requirements>
-
 <command interpreter="perl">
 #if $numsamples.numsamples2 == "1":
    runNGSplot.pl 

--- a/ngsplot_galaxytoolshed_v1.0/tool_dependencies.xml	Thu Mar 19 13:51:36 2015 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,23 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-    <package name="ngsplot" version="2.47.1">
-        <install version="1.0">
-            <actions>
-                <action type="shell_command">tar -xzvf ngsplot-2.47.1.tar.gz</action>
-                <action type="move_directory_files">
-                    <source_directory>ngsplot</source_directory>
-                    <destination_directory>$INSTALL_DIR/</destination_directory>
-                </action>
-                <action type="set_environment">
-                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/ngsplot/bin</environment_variable>
-                </action>
-                <action type="set_environment">
-                    <environment_variable name="NGSPLOT" action="prepend_to">$INSTALL_DIR/ngsplot</environment_variable>
-                </action>
-            </actions>
-        </install>
-        <readme>
-            This installation of ngsplot assumes that R v3.0+ has already been installed on your system, including R packages doMC and caTools, as well as bioconductor packages BSgenome, Rsamtools, and ShortRead. For more information on how to install these additional R packages, see https://code.google.com/p/ngsplot/.
-        </readme>
-    </package>
-</tool_dependency>