Mercurial > repos > nick > allele_counts

comparison tests/artificial-samples.csv.out @ 8:411adeff1eec draft

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Handle "." sample columns, update tests to work with BIAS column.
author nick
date Tue, 23 Aug 2016 02:30:56 -0400
parents 31361191d2d2
children
comparison
equal deleted inserted replaced
7:a72277535a2c 8:411adeff1eec
1 BRAIN chr1 0 30 0 0 0 30 1 A . 0.0 1 BRAIN chr1 0 30 0 0 0 30 1 A . 0.0 .
2 ARTERY chr1 0 0 0 30 0 30 1 G . 0.0 2 ARTERY chr1 0 0 0 30 0 30 1 G . 0.0 .
3 THYROID chr1 0 0 30 0 0 30 1 C . 0.0 3 THYROID chr1 0 0 30 0 0 30 1 C . 0.0 .
4 BRAIN chr1 10 30 0 0 0 30 1 A . 0.0 4 BRAIN chr1 10 30 0 0 0 30 1 A . 0.0 .
5 ARTERY chr1 10 30 0 2 0 32 1 A G 0.0625 5 ARTERY chr1 10 30 0 2 0 32 1 A G 0.0625 0.0
6 THYROID chr1 10 31 0 1 0 32 1 A G 0.03125 6 THYROID chr1 10 31 0 1 0 32 1 A G 0.03125 2.0
7 BRAIN chr1 20 30 0 2 0 32 1 A G 0.0625 7 BRAIN chr1 20 30 0 2 0 32 1 A G 0.0625 0.0
8 ARTERY chr1 20 34 0 6 0 40 2 A G 0.15 8 ARTERY chr1 20 34 0 6 0 40 2 A G 0.15 0.0
9 THYROID chr1 20 30 0 2 0 32 0 A G 0.0625 9 THYROID chr1 20 30 0 2 0 32 0 A G 0.0625 1.88235
10 BRAIN chr1 30 30 0 0 0 30 1 A . 0.0 10 BRAIN chr1 30 30 0 0 0 30 1 A . 0.0 .
11 BRAIN chr1 40 0 0 0 30 30 1 T . 0.0 11 BRAIN chr1 40 0 0 0 30 30 1 T . 0.0 .
12 ARTERY chr1 40 1 0 2 97 100 0 T G 0.02 12 ARTERY chr1 40 1 0 2 97 100 0 T G 0.02 5.5
13 THYROID chr1 40 0 69 0 31 100 0 C T 0.31 13 THYROID chr1 40 0 69 0 31 100 0 C T 0.31 1.00096