Mercurial > repos > nick > allele_counts
diff tests/artificial-samples.csv.out @ 8:411adeff1eec draft
Handle "." sample columns, update tests to work with BIAS column.
| author | nick |
|---|---|
| date | Tue, 23 Aug 2016 02:30:56 -0400 |
| parents | 31361191d2d2 |
| children |
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--- a/tests/artificial-samples.csv.out Wed Dec 09 11:37:02 2015 -0500 +++ b/tests/artificial-samples.csv.out Tue Aug 23 02:30:56 2016 -0400 @@ -1,13 +1,13 @@ -BRAIN chr1 0 30 0 0 0 30 1 A . 0.0 -ARTERY chr1 0 0 0 30 0 30 1 G . 0.0 -THYROID chr1 0 0 30 0 0 30 1 C . 0.0 -BRAIN chr1 10 30 0 0 0 30 1 A . 0.0 -ARTERY chr1 10 30 0 2 0 32 1 A G 0.0625 -THYROID chr1 10 31 0 1 0 32 1 A G 0.03125 -BRAIN chr1 20 30 0 2 0 32 1 A G 0.0625 -ARTERY chr1 20 34 0 6 0 40 2 A G 0.15 -THYROID chr1 20 30 0 2 0 32 0 A G 0.0625 -BRAIN chr1 30 30 0 0 0 30 1 A . 0.0 -BRAIN chr1 40 0 0 0 30 30 1 T . 0.0 -ARTERY chr1 40 1 0 2 97 100 0 T G 0.02 -THYROID chr1 40 0 69 0 31 100 0 C T 0.31 +BRAIN chr1 0 30 0 0 0 30 1 A . 0.0 . +ARTERY chr1 0 0 0 30 0 30 1 G . 0.0 . +THYROID chr1 0 0 30 0 0 30 1 C . 0.0 . +BRAIN chr1 10 30 0 0 0 30 1 A . 0.0 . +ARTERY chr1 10 30 0 2 0 32 1 A G 0.0625 0.0 +THYROID chr1 10 31 0 1 0 32 1 A G 0.03125 2.0 +BRAIN chr1 20 30 0 2 0 32 1 A G 0.0625 0.0 +ARTERY chr1 20 34 0 6 0 40 2 A G 0.15 0.0 +THYROID chr1 20 30 0 2 0 32 0 A G 0.0625 1.88235 +BRAIN chr1 30 30 0 0 0 30 1 A . 0.0 . +BRAIN chr1 40 0 0 0 30 30 1 T . 0.0 . +ARTERY chr1 40 1 0 2 97 100 0 T G 0.02 5.5 +THYROID chr1 40 0 69 0 31 100 0 C T 0.31 1.00096