Mercurial > repos > nick > allele_counts
diff tests/real-mit.csv.out @ 8:411adeff1eec draft
Handle "." sample columns, update tests to work with BIAS column.
| author | nick |
|---|---|
| date | Tue, 23 Aug 2016 02:30:56 -0400 |
| parents | 31361191d2d2 |
| children |
line wrap: on
line diff
--- a/tests/real-mit.csv.out Wed Dec 09 11:37:02 2015 -0500 +++ b/tests/real-mit.csv.out Tue Aug 23 02:30:56 2016 -0400 @@ -1,12 +1,12 @@ -#SAMPLE CHR POS A C G T CVRG ALLELES MAJOR MINOR MINOR.FREQ.PERC. -S1 chrM 2000 8 14903 1 1 14913 1 C A 0.00054 -S3 chrM 2000 10 13175 1 6 13192 1 C A 0.00076 -S1 chrM 3000 27966 42 44 12 28064 0 A G 0.00157 -S2 chrM 3000 20472 16 36 4 20528 1 A G 0.00175 -S3 chrM 3000 30267 40 46 10 30363 0 A G 0.00152 -S4 chrM 3000 15494 17 29 3 15543 0 A G 0.00187 -S1 chrM 4000 12258 3 2 4 12267 1 A T 0.00033 -S1 chrM 7000 4 26 3 13745 13778 0 T C 0.00189 -S2 chrM 7000 0 16 6 11392 11414 1 T C 0.0014 -S3 chrM 7000 4 13 10 13952 13979 1 T C 0.00093 -S3 chrM 8000 4 1 10066 3 10074 1 G A 0.0004 +#SAMPLE CHR POS A C G T CVRG ALLELES MAJOR MINOR MAF BIAS +S1 chrM 2000 8 14903 1 1 14913 1 C A 0.00054 2.03879 +S3 chrM 2000 10 13175 1 6 13192 1 C A 0.00076 2.51047 +S1 chrM 3000 27966 42 44 12 28064 0 A G 0.00157 0.51868 +S2 chrM 3000 20472 16 36 4 20528 1 A G 0.00175 0.22864 +S3 chrM 3000 30267 40 46 10 30363 0 A G 0.00152 0.01416 +S4 chrM 3000 15494 17 29 3 15543 0 A G 0.00187 0.33202 +S1 chrM 4000 12258 3 2 4 12267 1 A T 0.00033 0.99804 +S1 chrM 7000 4 26 3 13745 13778 0 T C 0.00189 0.81221 +S2 chrM 7000 0 16 6 11392 11414 1 T C 0.0014 0.04254 +S3 chrM 7000 4 13 10 13952 13979 1 T C 0.00093 0.92561 +S3 chrM 8000 4 1 10066 3 10074 1 G A 0.0004 1.00358