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tool_dependencies.xml: Defined PIL dependency
author Nick Stoler <nstoler@psu.edu>
date Mon, 03 Mar 2014 12:54:02 -0500
parents abed07ebeac7
children
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534516105ca9 visualize.py: The second tool, for a more aesthetic, abstract visualization.
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1 <tool id="dnagram" name="DNA graphic" version="0.1">
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54223991334b tool_dependencies.xml: Defined PIL dependency
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54223991334b tool_dependencies.xml: Defined PIL dependency
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3 <requirements>
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4 <requirement type="package" version="1.1.7">pil</requirement>
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5 </requirements>
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7 <description>Create a graphic from a DNA sequence</description>
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9 <command interpreter="python">visualize.py $input $output $size</command>
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11 <inputs>
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12 <param name="input" type="data" format="fasta,text" label="Input sequence" />
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13 <param name="size" type="integer" value="512" min="0" max="16384" label="Output image width (pixels)" help="Height will be the same. A power of 2 is highly recommended." />
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14 </inputs>
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16 <outputs>
534516105ca9 visualize.py: The second tool, for a more aesthetic, abstract visualization.
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17 <data name="output" format="png"/>
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18 </outputs>
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20 <help>
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22 .. class:: infomark
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534516105ca9 visualize.py: The second tool, for a more aesthetic, abstract visualization.
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24 **What it does**
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26 This tool creates a graphic representing a DNA sequence.
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27 The graphic is derived from the sequence, but is not a literal representation. It is intended to be an aesthetic visual based on the sequence. Even a small change in the input sequence will result in a drastically different image. See here for a full description and rationale: http://nstoler.com/misc/yourgenome.html
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29 </help>
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31 </tool>