comparison beagle_phase.sh @ 25:10afd4b2847b draft

Uploaded

24:79abc9d00340

#!/bin/bash


vcf_input=$1
out="out_phased"

directory=`dirname $0`

mkdir tmpdir$$

cp -rf $vcf_input tmpdir$$/input.vcf


java -jar $directory/beagle.jar gt=$vcf_input out=$out


rm -rf tmpdir$$

25:10afd4b2847b

#!/bin/bash

# variable affectation
vcf_input=$1
out="out_phased"

# create temporary directory
directory=`dirname $0`
mkdir tmpdir$$
cp -rf $vcf_input tmpdir$$/input.vcf
# launch beagle
java -jar $directory/beagle.jar gt=$vcf_input out=$out
# remove temporary directory
rm -rf tmpdir$$