Mercurial > repos > nicolas > oghma
view beagle_phase.sh @ 25:10afd4b2847b draft
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author | nicolas |
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date | Tue, 25 Oct 2016 14:33:02 -0400 |
parents | f9a3d6a36ca5 |
children |
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#!/bin/bash # variable affectation vcf_input=$1 out="out_phased" # create temporary directory directory=`dirname $0` mkdir tmpdir$$ cp -rf $vcf_input tmpdir$$/input.vcf # launch beagle java -jar $directory/beagle.jar gt=$vcf_input out=$out # remove temporary directory rm -rf tmpdir$$