Mercurial > repos > niels > annovar_yaml_wrapper

comparison annovar_yaml/annovar_yaml.xml @ 15:7f4fb56714e8 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author niels
date Fri, 07 Jun 2019 09:23:41 -0400
parents 94ddfdeb1d38
children fe3deb1dc20b
comparison
equal deleted inserted replaced
14:94ddfdeb1d38 15:7f4fb56714e8
1 <tool id="annovar_yaml" name="Annovar YAML" version="1.1"> 1 <tool id="annovar_yaml" name="Annovar YAML" version="1.0">
2 <requirements> 2 <requirements>
3 <requirement type="package" version="5.22.0">perl</requirement> 3 <requirement type="package" version="5.22.0">perl</requirement>
4 <requirement type="package" version="1.24">perl-yaml</requirement> 4 <requirement type="package" version="1.27">perl-yaml</requirement>
5 <requirement type="package" version="1.70">perl-yaml-tiny</requirement> 5 <requirement type="package" version="1.73">perl-yaml-tiny</requirement>
6 <requirement type="package" version="0.74">perl-yaml-xs</requirement> 6 <requirement type="package" version="0.74">perl-yaml-xs</requirement>
7 <requirement type="package" version="2.161">perl-data-dumper</requirement> 7 <requirement type="package" version="2.173">perl-data-dumper</requirement>
8 <requirement type="package" version="2.50">perl-getopt-long</requirement> 8 <requirement type="package" version="2.50">perl-getopt-long</requirement>
9 </requirements> 9 </requirements>
10 <command detect_errors="exit_code"><![CDATA[ 10 <command detect_errors="exit_code"><![CDATA[
11 which perl && perl $__tool_directory__/annovar_yaml.pl --invcf $vcf --inyml $yaml --outvcf $output 11 perl $__tool_directory__/annovar_yaml.pl --invcf $vcf --inyml $yaml --outvcf $output
12 ]]></command> 12 ]]></command>
13 13
14 <inputs> 14 <inputs>
15 15
16 <param type="data" name="yaml" format="txt" /> 16 <param type="data" name="yaml" format="txt" />