Mercurial > repos > niels > annovar_yaml_wrapper

changeset 14:94ddfdeb1d38 draft

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Uploaded
author niels
date Tue, 14 May 2019 07:49:56 -0400
parents aeb0873c9218
children 7f4fb56714e8
files annovar_yaml/annovar_yaml.xml
diffstat 1 files changed, 5 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/annovar_yaml/annovar_yaml.xml	Tue May 14 07:19:12 2019 -0400
+++ b/annovar_yaml/annovar_yaml.xml	Tue May 14 07:49:56 2019 -0400
@@ -1,14 +1,14 @@
-<tool id="annovar_yaml" name="Annovar YAML" version="1.0">
+<tool id="annovar_yaml" name="Annovar YAML" version="1.1">
     <requirements>
         <requirement type="package" version="5.22.0">perl</requirement>
-        <requirement type="package" version="1.27">perl-yaml</requirement>
-        <requirement type="package" version="1.73">perl-yaml-tiny</requirement>
+        <requirement type="package" version="1.24">perl-yaml</requirement>
+        <requirement type="package" version="1.70">perl-yaml-tiny</requirement>
         <requirement type="package" version="0.74">perl-yaml-xs</requirement>
-        <requirement type="package" version="2.173">perl-data-dumper</requirement>
+        <requirement type="package" version="2.161">perl-data-dumper</requirement>
         <requirement type="package" version="2.50">perl-getopt-long</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
-        perl --version && perl $__tool_directory__/annovar_yaml.pl --invcf $vcf --inyml $yaml --outvcf $output
+        which perl && perl $__tool_directory__/annovar_yaml.pl --invcf $vcf --inyml $yaml --outvcf $output
     ]]></command>
 
     <inputs>