Mercurial > repos > niels > annovar_yaml_wrapper

changeset 13:aeb0873c9218 draft

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Uploaded
author niels
date Tue, 14 May 2019 07:19:12 -0400
parents 76c907b6eb0e
children 94ddfdeb1d38
files annovar_yaml/annovar_yaml.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/annovar_yaml/annovar_yaml.xml	Tue May 14 06:10:06 2019 -0400
+++ b/annovar_yaml/annovar_yaml.xml	Tue May 14 07:19:12 2019 -0400
@@ -8,7 +8,7 @@
         <requirement type="package" version="2.50">perl-getopt-long</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
-        perl $__tool_directory__/annovar_yaml.pl --invcf $vcf --inyml $yaml --outvcf $output
+        perl --version && perl $__tool_directory__/annovar_yaml.pl --invcf $vcf --inyml $yaml --outvcf $output
     ]]></command>
 
     <inputs>