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4
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1 PROGRAM_NAME = sickle
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2 VERSION = 1.33
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3 CC = gcc
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4 CFLAGS = -Wall -pedantic -DVERSION=$(VERSION)
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5 DEBUG = -g
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6 OPT = -O3
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7 ARCHIVE = $(PROGRAM_NAME)_$(VERSION)
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8 LDFLAGS=
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9 LIBS = -lz
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10 SDIR = src
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11
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12 .PHONY: clean default build distclean dist debug
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13
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14 default: build
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15
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16 sliding.o: $(SDIR)/sliding.c $(SDIR)/kseq.h $(SDIR)/sickle.h
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17 $(CC) $(CFLAGS) $(OPT) -c $(SDIR)/$*.c
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18
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19 trim_single.o: $(SDIR)/trim_single.c $(SDIR)/sickle.h $(SDIR)/kseq.h
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20 $(CC) $(CFLAGS) $(OPT) -c $(SDIR)/$*.c
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21
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22 trim_paired.o: $(SDIR)/trim_paired.c $(SDIR)/sickle.h $(SDIR)/kseq.h
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23 $(CC) $(CFLAGS) $(OPT) -c $(SDIR)/$*.c
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24
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25 sickle.o: $(SDIR)/sickle.c $(SDIR)/sickle.h
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26 $(CC) $(CFLAGS) $(OPT) -c $(SDIR)/$*.c
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27
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28 print_record.o: $(SDIR)/print_record.c $(SDIR)/print_record.h
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29 $(CC) $(CFLAGS) $(OPT) -c $(SDIR)/$*.c
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30
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31 clean:
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32 rm -rf *.o $(SDIR)/*.gch ./sickle
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33
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34 distclean: clean
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35 rm -rf *.tar.gz
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36
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37 dist:
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38 tar -zcf $(ARCHIVE).tar.gz src Makefile README.md sickle.xml LICENSE
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39
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40 build: sliding.o trim_single.o trim_paired.o sickle.o print_record.o
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41 $(CC) $(CFLAGS) $(LDFLAGS) $(OPT) $? -o sickle $(LIBS)
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42
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43 debug:
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44 $(MAKE) build "CFLAGS=-Wall -pedantic -g -DDEBUG"
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45
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