Mercurial > repos > nilesh > fastq_validator

changeset 13:884eccbe5659 draft

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Uploaded
author nilesh
date Wed, 26 Jun 2013 20:24:54 -0400
parents ea2a9017e150
children deccb87e7d75
files tool_dependencies.xml
diffstat 1 files changed, 27 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Wed Jun 26 20:24:54 2013 -0400
@@ -0,0 +1,27 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <set_environment version="1.0">
+        <environment_variable action="set_to" name="FQVAL_SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable>   
+    </set_environment>
+    <package name="fastq_validator" version="1.0.0">
+        <install version="1.0">
+            <actions>
+                 <action type="download_file">http://genome.sph.umich.edu/w/images/2/20/FastQValidatorLibStatGen.0.1.1a.tgz</action>
+                 <action type="shell_command">tar xvf FastQValidatorLibStatGen.0.1.1a.tgz</action>
+                <action type="shell_command">cd fastQValidator_0.1.1a</action>
+                <action type="shell_command">make</action>
+                <action type="move_directory_files">
+                    <source_directory>fastQValidator</source_directory>
+                    <destination_directory>$INSTALL_DIR</destination_directory>
+                </action>
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+           View the FastQ Validator overview at http://genome.sph.umich.edu/wiki/FastQValidator.
+        </readme>
+        <repository changeset_revision="ea2a9017e150" name="fastq_validator" owner="nilesh" toolshed="http://toolshed.g2.bx.psu.edu" />
+    </package>
+</tool_dependency>