Mercurial > repos > nilshomer > srma_wrapper
comparison srma_ref.loc @ 0:9d60d2fce247 default tip
Migrated tool version 0.1.1 from old tool shed archive to new tool shed repository
| author | nilshomer |
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| date | Tue, 07 Jun 2011 17:43:07 -0400 |
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| -1:000000000000 | 0:9d60d2fce247 |
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| 1 #This is a sample file distributed with Galaxy that enables tools | |
| 2 #to use a directory of SRMA indexed sequences data files. You will need | |
| 3 #to create these data files and then create a srma_ref.loc file | |
| 4 #similar to this one (store it in this directory) that points to | |
| 5 #the directories in which those files are stored. The srma_ref.loc | |
| 6 #file has this format (white space characters are TAB characters): | |
| 7 # | |
| 8 #<build> <fasta_file> | |
| 9 # | |
| 10 #So, for example, if you had hg18 indexed stored in | |
| 11 #/depot/data2/galaxy/srma/hg18/, | |
| 12 #then the srma_ref.loc entry would look like this: | |
| 13 # | |
| 14 #hg18 /depot/data2/galaxy/srma/hg18/hg18.fa | |
| 15 # | |
| 16 #and your /depot/data2/galaxy/srma/hg18/ directory | |
| 17 #would contain hg18.fa.*.brg and hg18.fa.*.bif files: | |
| 18 #hg18.fa | |
| 19 #hg18.fa.dict | |
| 20 #...etc... | |
| 21 # | |
| 22 #The dictionary file for each reference (ex. hg18.fa.dict) must be | |
| 23 #created with Picard (http://picard.sourceforge.net). | |
| 24 # | |
| 25 20079 /Users/nhomer/hg/galaxy-central/srma/DH10B.fa |