Mercurial > repos > nilshomer > srma_wrapper
view srma_ref.loc @ 0:9d60d2fce247 default tip
Migrated tool version 0.1.1 from old tool shed archive to new tool shed repository
author | nilshomer |
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date | Tue, 07 Jun 2011 17:43:07 -0400 |
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#This is a sample file distributed with Galaxy that enables tools #to use a directory of SRMA indexed sequences data files. You will need #to create these data files and then create a srma_ref.loc file #similar to this one (store it in this directory) that points to #the directories in which those files are stored. The srma_ref.loc #file has this format (white space characters are TAB characters): # #<build> <fasta_file> # #So, for example, if you had hg18 indexed stored in #/depot/data2/galaxy/srma/hg18/, #then the srma_ref.loc entry would look like this: # #hg18 /depot/data2/galaxy/srma/hg18/hg18.fa # #and your /depot/data2/galaxy/srma/hg18/ directory #would contain hg18.fa.*.brg and hg18.fa.*.bif files: #hg18.fa #hg18.fa.dict #...etc... # #The dictionary file for each reference (ex. hg18.fa.dict) must be #created with Picard (http://picard.sourceforge.net). # 20079 /Users/nhomer/hg/galaxy-central/srma/DH10B.fa