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annotate test-data/Assembly_statistics_-_SRR1002850_SMALL.fasta.tabular @ 1:7556309ffbaf draft default tip

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"planemo upload for repository https://github.com/phac-nml/galaxy_tools commit fb4c29f720748f46ff501140f2cd306bab6614f9"
author nml
date Fri, 29 May 2020 13:51:50 -0400
parents ad2b274663f8
children
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ad2b274663f8 planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
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1 Statistics for contig lengths:
ad2b274663f8 planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
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2 Min contig length: 56
ad2b274663f8 planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
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3 Max contig length: 726,282
ad2b274663f8 planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
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4 Mean contig length: 12811.87
ad2b274663f8 planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
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5 Standard deviation of contig length: 61076.24
ad2b274663f8 planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
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6 Median contig length: 331
ad2b274663f8 planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
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7 N50 contig length: 203,546
ad2b274663f8 planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
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8
ad2b274663f8 planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
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9 Statistics for numbers of contigs:
ad2b274663f8 planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
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10 Number of contigs: 383
ad2b274663f8 planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
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11 Number of contigs >=1kb: 109
ad2b274663f8 planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
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12 Number of contigs in N50: 6
ad2b274663f8 planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
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ad2b274663f8 planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
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14 Statistics for bases in the contigs:
ad2b274663f8 planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
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15 Number of bases in all contigs: 4,906,947
ad2b274663f8 planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
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16 Number of bases in contigs >=1kb: 4,843,765
ad2b274663f8 planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
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17 GC Content of contigs: 52.18 %
ad2b274663f8 planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
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ad2b274663f8 planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
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19 Simple Dinucleotide repeats:
ad2b274663f8 planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
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20 Number of contigs with over 70% dinucleotode repeats: 0.00 % (0 contigs)
ad2b274663f8 planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
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21 AT: 0.00 % (0 contigs)
ad2b274663f8 planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
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22 CG: 0.00 % (0 contigs)
ad2b274663f8 planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
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23 AC: 0.00 % (0 contigs)
ad2b274663f8 planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
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24 TG: 0.00 % (0 contigs)
ad2b274663f8 planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
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25 AG: 0.00 % (0 contigs)
ad2b274663f8 planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
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26 TC: 0.00 % (0 contigs)
ad2b274663f8 planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
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ad2b274663f8 planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
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28 Simple mononucleotide repeats:
ad2b274663f8 planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
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29 Number of contigs with over 50% mononucleotode repeats: 0.00 % (0 contigs)
ad2b274663f8 planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
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30 AA: 0.00 % (0 contigs)
ad2b274663f8 planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
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31 TT: 0.00 % (0 contigs)
ad2b274663f8 planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
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32 CC: 0.00 % (0 contigs)
ad2b274663f8 planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
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33 GG: 0.00 % (0 contigs)
ad2b274663f8 planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
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