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view test-data/Assembly_statistics_-_SRR1002850_SMALL.fasta.tabular @ 0:ad2b274663f8 draft

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planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
author nml
date Tue, 07 Nov 2017 12:28:31 -0500
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Statistics for contig lengths:
	Min contig length:	56
	Max contig length:	726,282
	Mean contig length:	12811.87
	Standard deviation of contig length:	61076.24
	Median contig length:	331
	N50 contig length:	203,546

Statistics for numbers of contigs:
	Number of contigs:	383
	Number of contigs >=1kb:	109
	Number of contigs in N50:	6

Statistics for bases in the contigs:
	Number of bases in all contigs:	4,906,947
	Number of bases in contigs >=1kb:	4,843,765
	GC Content of contigs:	52.18 %

Simple Dinucleotide repeats:
	Number of contigs with over 70% dinucleotode repeats:	0.00 % (0 contigs)
	AT:	0.00 % (0 contigs)
	CG:	0.00 % (0 contigs)
	AC:	0.00 % (0 contigs)
	TG:	0.00 % (0 contigs)
	AG:	0.00 % (0 contigs)
	TC:	0.00 % (0 contigs)

Simple mononucleotide repeats:
	Number of contigs with over 50% mononucleotode repeats:	0.00 % (0 contigs)
	AA:	0.00 % (0 contigs)
	TT:	0.00 % (0 contigs)
	CC:	0.00 % (0 contigs)
	GG:	0.00 % (0 contigs)