Mercurial > repos > nml > assemblystats
comparison test-data/Assembly_statistics_-_SRR1002850_SMALL.fasta.tabular @ 0:ad2b274663f8 draft
planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
| author | nml |
|---|---|
| date | Tue, 07 Nov 2017 12:28:31 -0500 |
| parents | |
| children |
comparison
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deleted
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| -1:000000000000 | 0:ad2b274663f8 |
|---|---|
| 1 Statistics for contig lengths: | |
| 2 Min contig length: 56 | |
| 3 Max contig length: 726,282 | |
| 4 Mean contig length: 12811.87 | |
| 5 Standard deviation of contig length: 61076.24 | |
| 6 Median contig length: 331 | |
| 7 N50 contig length: 203,546 | |
| 8 | |
| 9 Statistics for numbers of contigs: | |
| 10 Number of contigs: 383 | |
| 11 Number of contigs >=1kb: 109 | |
| 12 Number of contigs in N50: 6 | |
| 13 | |
| 14 Statistics for bases in the contigs: | |
| 15 Number of bases in all contigs: 4,906,947 | |
| 16 Number of bases in contigs >=1kb: 4,843,765 | |
| 17 GC Content of contigs: 52.18 % | |
| 18 | |
| 19 Simple Dinucleotide repeats: | |
| 20 Number of contigs with over 70% dinucleotode repeats: 0.00 % (0 contigs) | |
| 21 AT: 0.00 % (0 contigs) | |
| 22 CG: 0.00 % (0 contigs) | |
| 23 AC: 0.00 % (0 contigs) | |
| 24 TG: 0.00 % (0 contigs) | |
| 25 AG: 0.00 % (0 contigs) | |
| 26 TC: 0.00 % (0 contigs) | |
| 27 | |
| 28 Simple mononucleotide repeats: | |
| 29 Number of contigs with over 50% mononucleotode repeats: 0.00 % (0 contigs) | |
| 30 AA: 0.00 % (0 contigs) | |
| 31 TT: 0.00 % (0 contigs) | |
| 32 CC: 0.00 % (0 contigs) | |
| 33 GG: 0.00 % (0 contigs) | |
| 34 |