Mercurial > repos > nml > collapse_collections
changeset 6:830961c48e42 draft
"planemo upload commit 9023eff03236d0c02dfa1c303f652cecb77cb09c"
| author | nml |
|---|---|
| date | Thu, 13 Feb 2020 12:38:44 -0500 |
| parents | 33151a38533a |
| children | 90981f86000f |
| files | merge.xml |
| diffstat | 1 files changed, 4 insertions(+), 5 deletions(-) [+] |
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--- a/merge.xml Tue Aug 27 12:07:37 2019 -0400 +++ b/merge.xml Thu Feb 13 12:38:44 2020 -0500 @@ -1,4 +1,4 @@ -<tool id="collapse_dataset" name="Collapse Collection" version="4.1"> +<tool id="collapse_dataset" name="Collapse Collection" version="4.2"> <description>into single dataset in order of the collection</description> <command> <![CDATA[ @@ -18,13 +18,13 @@ #if $one_header: printf "$f.element_identifier\t"; tail -q -n +2 "$f"; #else: - printf "$f.element_identifier\t"; cat "$f"; + printf "$f.element_identifier\t"; awk '{ print $0 } END { if (NR == 0 && NF == 0) { print "" } }' "$f"; #end if #elif str($filename.place_name) == "same_multiple": #if $one_header: awk '{if (NR!=1) {print "$f.element_identifier\t"$0}}' "$f"; #else: - awk '{print "$f.element_identifier\t"$0}' "$f"; + awk '{print "$f.element_identifier\t"$0} END { if (NR == 0 && NF == 0) { print "$f.element_identifier\t" } }' "$f"; #end if #elif str($filename.place_name) == "above": #if $one_header: @@ -51,8 +51,7 @@ <inputs> <param name="input_list" type="data" format="data" label="Collection of files to collapse into single dataset" help="" optional="false" multiple="true" /> <param name="one_header" type="boolean" display="checkboxes" label="Keep one header line" help="Combine first line of each file as the header for the final dataset. Useful when same header line is found in all files."/> - <conditional name="filename"> - + <conditional name="filename"> <param name="add_name" type="boolean" display="checkboxes" label="Prepend File name"/> <when value="true"> <param name="place_name" type="select" label="Where to add dataset name">