Mercurial > repos > nml > collapse_collections
changeset 3:c0c988378838 draft
planemo upload commit 6bde05f38465311441e89cfa070f03d3b6edad1b
| author | nml |
|---|---|
| date | Mon, 24 Oct 2016 16:23:11 -0400 |
| parents | 4263967e8d40 |
| children | 25136a2b0cfe |
| files | first merge.xml second third |
| diffstat | 4 files changed, 22 insertions(+), 22 deletions(-) [+] |
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--- a/first Tue May 17 15:56:30 2016 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,1 +0,0 @@ -1 \ No newline at end of file
--- a/merge.xml Tue May 17 15:56:30 2016 -0400 +++ b/merge.xml Mon Oct 24 16:23:11 2016 -0400 @@ -1,4 +1,4 @@ -<tool id="collapse_dataset" name="Collapse Collection" version="2.1"> +<tool id="collapse_dataset" name="Collapse Collection" version="3.0"> <description>Collapse collection into single dataset in order of the collection</description> <command> <![CDATA[ @@ -6,13 +6,17 @@ ( #for $f in $input_list# #if $filename.add_name: - #if str($filename.place_name) == "same": - printf "$f.element_identifier\t" ; - #else - printf "$f.element_identifier\n" ; + #if str($filename.place_name) == "same_once": + printf "$f.element_identifier\t"; cat "$f"; + #elif str($filename.place_name) == "same_multiple": + awk '{print "$f.element_identifier\t"$0}' "$f"; + #elif str($filename.place_name) == "above": + printf "$f.element_identifier\n"; cat "$f"; #end if + #else: + cat "$f" ; #end if - cat "$f" ; + #end for# ) > $output @@ -21,12 +25,13 @@ </command> <inputs> - <param name="input_list" type="data" label="Collection of files to collapse into single dataset" help="" optional="false" multiple="true" /> + <param name="input_list" type="data" format="data" label="Collection of files to collapse into single dataset" help="" optional="false" multiple="true" /> <conditional name="filename"> <param name="add_name" type="boolean" display="checkboxes" label="Append File name"/> <when value="true"> <param name="place_name" type="select" label="Where to add dataset name"> - <option value="same">Same line</option> + <option value="same_once">Same line and only once per dataset</option> + <option value="same_multiple">Same line and each line in dataset</option> <option value="above">Line Above</option> </param> </when> @@ -38,20 +43,18 @@ <data name="output" format_source="input_list" ></data> </outputs> <tests> - <test> - <param name="input_list"> - <collection type="list"> - <element name="input1" value="input1" /> - <element name="input2" value="input2" /> - </collection> - </param> - <output name="output" file="answer.txt"/> - </test> + <test> + <param name="input_list"> + <collection type="list"> + <element name="input1" value="input1" /> + <element name="input2" value="input2" /> + </collection> + </param> + <output name="output" file="answer.txt"/> + </test> </tests> <help> Combines a list collection into a single file dataset with option to include dataset names. - - </help> <citations> </citations>