Mercurial > repos > nml > combine_assemblystats
comparison test-data/first.txt @ 0:1855203c2e6c draft default tip
planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 132092ff7fe1c4810d1221054419389180b81657
| author | nml |
|---|---|
| date | Wed, 08 Nov 2017 16:38:50 -0500 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:1855203c2e6c |
|---|---|
| 1 Statistics for contig lengths: | |
| 2 Min contig length: 1,134 | |
| 3 Max contig length: 101,601 | |
| 4 Mean contig length: 24480.24 | |
| 5 Standard deviation of contig length: 23362.52 | |
| 6 Median contig length: 16,139 | |
| 7 N50 contig length: 45,147 | |
| 8 | |
| 9 Statistics for numbers of contigs: | |
| 10 Number of contigs: 186 | |
| 11 Number of contigs >=1kb: 186 | |
| 12 Number of contigs in N50: 35 | |
| 13 | |
| 14 Statistics for bases in the contigs: | |
| 15 Number of bases in all contigs: 4,553,325 | |
| 16 Number of bases in contigs >=1kb: 4,553,325 | |
| 17 GC Content of contigs: 47.56 % | |
| 18 | |
| 19 Simple Dinucleotide repeats: | |
| 20 Number of contigs with over 70% dinucleotode repeats: 0.00 % (0 contigs) | |
| 21 AT: 0.00 % (0 contigs) | |
| 22 CG: 0.00 % (0 contigs) | |
| 23 AC: 0.00 % (0 contigs) | |
| 24 TG: 0.00 % (0 contigs) | |
| 25 AG: 0.00 % (0 contigs) | |
| 26 TC: 0.00 % (0 contigs) | |
| 27 | |
| 28 Simple mononucleotide repeats: | |
| 29 Number of contigs with over 50% mononucleotode repeats: 0.00 % (0 contigs) | |
| 30 AA: 0.00 % (0 contigs) | |
| 31 TT: 0.00 % (0 contigs) | |
| 32 CC: 0.00 % (0 contigs) | |
| 33 GG: 0.00 % (0 contigs) | |
| 34 |