Mercurial > repos > nml > combine_assemblystats

diff test-data/first.txt @ 0:1855203c2e6c draft default tip

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planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 132092ff7fe1c4810d1221054419389180b81657
author nml
date Wed, 08 Nov 2017 16:38:50 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/first.txt	Wed Nov 08 16:38:50 2017 -0500
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+Statistics for contig lengths:
+	Min contig length:	1,134
+	Max contig length:	101,601
+	Mean contig length:	24480.24
+	Standard deviation of contig length:	23362.52
+	Median contig length:	16,139
+	N50 contig length:	45,147
+
+Statistics for numbers of contigs:
+	Number of contigs:	186
+	Number of contigs >=1kb:	186
+	Number of contigs in N50:	35
+
+Statistics for bases in the contigs:
+	Number of bases in all contigs:	4,553,325
+	Number of bases in contigs >=1kb:	4,553,325
+	GC Content of contigs:	47.56 %
+
+Simple Dinucleotide repeats:
+	Number of contigs with over 70% dinucleotode repeats:	0.00 % (0 contigs)
+	AT:	0.00 % (0 contigs)
+	CG:	0.00 % (0 contigs)
+	AC:	0.00 % (0 contigs)
+	TG:	0.00 % (0 contigs)
+	AG:	0.00 % (0 contigs)
+	TC:	0.00 % (0 contigs)
+
+Simple mononucleotide repeats:
+	Number of contigs with over 50% mononucleotode repeats:	0.00 % (0 contigs)
+	AA:	0.00 % (0 contigs)
+	TT:	0.00 % (0 contigs)
+	CC:	0.00 % (0 contigs)
+	GG:	0.00 % (0 contigs)
+