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"planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 57067916cb7b9c5b65c1da59d4bbb846c3e3af2f"
author nml
date Tue, 23 Jun 2020 10:26:18 -0400
parents 93ea196681c8
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48922d9ca355 "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 57067916cb7b9c5b65c1da59d4bbb846c3e3af2f"
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1 <tool id="filtervcf" name="Filter vcf" version ="@VERSION@+galaxy1">
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2 <description>filter out indels and complex SNVS</description>
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48922d9ca355 "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 57067916cb7b9c5b65c1da59d4bbb846c3e3af2f"
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3 <macros>
48922d9ca355 "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 57067916cb7b9c5b65c1da59d4bbb846c3e3af2f"
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4 <import>macros.xml</import>
48922d9ca355 "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 57067916cb7b9c5b65c1da59d4bbb846c3e3af2f"
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5 </macros>
48922d9ca355 "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 57067916cb7b9c5b65c1da59d4bbb846c3e3af2f"
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6 <expand macro="requirements"/>
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7 <command detect_errors="exit_code">
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8 filterVcf.pl --noindels $vcf
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9 -o $vcfout
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10 </command>
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11 <inputs>
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12 <param name="vcf" type="data" label="VCF file" format="vcf"/>
93ea196681c8 "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 90a172f1fc12b9c4d73f4c924a8c0c5a559589d0"
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13 </inputs>
93ea196681c8 "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 90a172f1fc12b9c4d73f4c924a8c0c5a559589d0"
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14 <outputs>
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15 <data format="vcf" name="vcfout" />
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16 </outputs>
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17 <tests>
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18 <test>
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19 <param name="vcf" value="filterVcf.input.1.vcf"/>
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20 <output name="vcfout" file="filterVcf.output.1.vcf"/>
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21 </test>
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22 </tests>
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23 <help>
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24 Filter out indels and complex variants from VCF file
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25 </help>
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26 <expand macro="citations"/>
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27 </tool>