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"planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 57067916cb7b9c5b65c1da59d4bbb846c3e3af2f"
author nml
date Tue, 23 Jun 2020 10:26:18 -0400
parents 93ea196681c8
children
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<tool id="filtervcf" name="Filter vcf" version ="@VERSION@+galaxy1">
  <description>filter out indels and complex SNVS</description>
  <macros>
   <import>macros.xml</import>
  </macros>
  <expand macro="requirements"/>
 <command detect_errors="exit_code">
	filterVcf.pl --noindels  $vcf
	-o $vcfout
  </command>
  <inputs>
    <param name="vcf" type="data"  label="VCF file" format="vcf"/>
  </inputs>
  <outputs>
    <data format="vcf" name="vcfout" />
  </outputs>
  <tests>
    <test>
      <param name="vcf" value="filterVcf.input.1.vcf"/>
      <output name="vcfout" file="filterVcf.output.1.vcf"/>
    </test>
  </tests>
  <help>
  Filter out indels and complex variants from VCF file
  </help>
  <expand macro="citations"/>
</tool>