comparison filtervcf.xml @ 0:93ea196681c8 draft

"planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 90a172f1fc12b9c4d73f4c924a8c0c5a559589d0"

0:93ea196681c8

<tool id="filtervcf" name="Filter vcf" version ="1.8.2">
  <description>filter out indels and complex SNVS</description>
  <requirements>
    <requirement type="package" version="1.8.2">snvphyl-tools</requirement>
  </requirements>
 <command detect_errors="exit_code">
	filterVcf.pl --noindels  $vcf
	-o $vcfout
  </command>
  <inputs>
    <param name="vcf" type="data"  label="VCF file" format="vcf"/>
  </inputs>
  <outputs>
    <data format="vcf" name="vcfout" />
  </outputs>
  <tests>
    <test>
      <param name="vcf" value="filterVcf.input.1.vcf"/>
      <output name="vcfout" file="filterVcf.output.1.vcf"/>
    </test>
  </tests>
  <help>
  Filter out indels and complex variants from VCF file
  </help>
<citations>
</citations>
</tool>