Mercurial > repos > nml > gnali

annotate test-data/patch-results/Nonessential_Host_Genes_(Detailed).txt @ 2:49012f2b4c19 draft

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"planemo upload for repository https://github.com/phac-nml/gnali/ commit 5c43f6f0a86589e95959c4d57b60305c8aba548d"
author nml
date Mon, 20 Apr 2020 17:04:56 -0400
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49012f2b4c19 "planemo upload for repository https://github.com/phac-nml/gnali/ commit 5c43f6f0a86589e95959c4d57b60305c8aba548d"
nml
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1 Chromosome Position_Start RSID Reference_Allele Alternate_Allele Score Quality LoF_Variant LoF_Annotation HGNC_Symbol Ensembl Code
49012f2b4c19 "planemo upload for repository https://github.com/phac-nml/gnali/ commit 5c43f6f0a86589e95959c4d57b60305c8aba548d"
nml
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2 10 105005931 rs61746130 C T 4480914.72 PASS T stop_gained RPEL1 ENSG00000235376
49012f2b4c19 "planemo upload for repository https://github.com/phac-nml/gnali/ commit 5c43f6f0a86589e95959c4d57b60305c8aba548d"
nml
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3 12 80770908 rs1222716200 C T 4175.99 PASS T stop_gained OTOGL ENSG00000165899
49012f2b4c19 "planemo upload for repository https://github.com/phac-nml/gnali/ commit 5c43f6f0a86589e95959c4d57b60305c8aba548d"
nml
parents:
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4 16 81242148 rs752607955 GTT G 218022105.25 PASS - frameshift_variant PKD1L2 ENSG00000166473
49012f2b4c19 "planemo upload for repository https://github.com/phac-nml/gnali/ commit 5c43f6f0a86589e95959c4d57b60305c8aba548d"
nml
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5 16 81242198 rs7499011 G A 124146106.95 PASS A stop_gained PKD1L2 ENSG00000166473
49012f2b4c19 "planemo upload for repository https://github.com/phac-nml/gnali/ commit 5c43f6f0a86589e95959c4d57b60305c8aba548d"
nml
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6 3 130114290 rs115380050 C T 105366.23 PASS T stop_gained COL6A5 ENSG00000172752
49012f2b4c19 "planemo upload for repository https://github.com/phac-nml/gnali/ commit 5c43f6f0a86589e95959c4d57b60305c8aba548d"
nml
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7 3 130139996 rs139339125 G T 576280.08 PASS T splice_acceptor_variant COL6A5 ENSG00000172752
49012f2b4c19 "planemo upload for repository https://github.com/phac-nml/gnali/ commit 5c43f6f0a86589e95959c4d57b60305c8aba548d"
nml
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8 3 130159309 . AAT A 3284.41 PASS - frameshift_variant COL6A5 ENSG00000172752
49012f2b4c19 "planemo upload for repository https://github.com/phac-nml/gnali/ commit 5c43f6f0a86589e95959c4d57b60305c8aba548d"
nml
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9 3 130159330 rs2201717 C T 8770317.31 PASS T stop_gained COL6A5 ENSG00000172752
49012f2b4c19 "planemo upload for repository https://github.com/phac-nml/gnali/ commit 5c43f6f0a86589e95959c4d57b60305c8aba548d"
nml
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10 3 130187662 rs115375867 G T 1785133.61 PASS T stop_gained COL6A5 ENSG00000172752
49012f2b4c19 "planemo upload for repository https://github.com/phac-nml/gnali/ commit 5c43f6f0a86589e95959c4d57b60305c8aba548d"
nml
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11 3 130190720 rs11355796 AT A 157372019.43 PASS - frameshift_variant COL6A5 ENSG00000172752
49012f2b4c19 "planemo upload for repository https://github.com/phac-nml/gnali/ commit 5c43f6f0a86589e95959c4d57b60305c8aba548d"
nml
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12 3 53324819 rs782498227 ATGGCAC A 304085671.95 PASS - splice_donor_variant&intron_variant DCP1A ENSG00000162290
49012f2b4c19 "planemo upload for repository https://github.com/phac-nml/gnali/ commit 5c43f6f0a86589e95959c4d57b60305c8aba548d"
nml
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13 3 46414935 rs938517991 AT A 9974.16 PASS - frameshift_variant CCR5 ENSG00000160791
49012f2b4c19 "planemo upload for repository https://github.com/phac-nml/gnali/ commit 5c43f6f0a86589e95959c4d57b60305c8aba548d"
nml
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14 3 46414943 rs775750898 TACAGTCAGTATCAATTCTGGAAGAATTTCCAG T 74264261.52 PASS - frameshift_variant CCR5 ENSG00000160791
49012f2b4c19 "planemo upload for repository https://github.com/phac-nml/gnali/ commit 5c43f6f0a86589e95959c4d57b60305c8aba548d"
nml
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15 3 46415066 rs146972949 C T 120238.89 PASS T stop_gained CCR5 ENSG00000160791
49012f2b4c19 "planemo upload for repository https://github.com/phac-nml/gnali/ commit 5c43f6f0a86589e95959c4d57b60305c8aba548d"
nml
parents:
diff changeset
16 16 81242148 rs752607955 GTT G 12370921.18 PASS - frameshift_variant PKD1L2 ENSG00000166473
49012f2b4c19 "planemo upload for repository https://github.com/phac-nml/gnali/ commit 5c43f6f0a86589e95959c4d57b60305c8aba548d"
nml
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17 16 81242198 rs7499011 G A 7423817.85 PASS A stop_gained PKD1L2 ENSG00000166473
49012f2b4c19 "planemo upload for repository https://github.com/phac-nml/gnali/ commit 5c43f6f0a86589e95959c4d57b60305c8aba548d"
nml
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18 17 38975327 rs764791942 T TAGCCGCCGCC 282793.87 PASS AGCCGCCGCC frameshift_variant KRT10 ENSG00000186395
49012f2b4c19 "planemo upload for repository https://github.com/phac-nml/gnali/ commit 5c43f6f0a86589e95959c4d57b60305c8aba548d"
nml
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19 17 38975329 rs762667965 G GAGCTT 238711.24 PASS AGCTT frameshift_variant KRT10 ENSG00000186395
49012f2b4c19 "planemo upload for repository https://github.com/phac-nml/gnali/ commit 5c43f6f0a86589e95959c4d57b60305c8aba548d"
nml
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20 3 130159330 rs2201717 C T 165579.83 PASS T stop_gained COL6A5 ENSG00000172752
49012f2b4c19 "planemo upload for repository https://github.com/phac-nml/gnali/ commit 5c43f6f0a86589e95959c4d57b60305c8aba548d"
nml
parents:
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21 3 130190720 rs11355796 AT A 14066881.99 PASS - frameshift_variant COL6A5 ENSG00000172752
49012f2b4c19 "planemo upload for repository https://github.com/phac-nml/gnali/ commit 5c43f6f0a86589e95959c4d57b60305c8aba548d"
nml
parents:
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22 3 53324819 rs782498227 ATGGCAC A 17202744.04 PASS - splice_donor_variant&intron_variant DCP1A ENSG00000162290
49012f2b4c19 "planemo upload for repository https://github.com/phac-nml/gnali/ commit 5c43f6f0a86589e95959c4d57b60305c8aba548d"
nml
parents:
diff changeset
23 3 46414943 rs775750898 TACAGTCAGTATCAATTCTGGAAGAATTTCCAG T 1947603.90 PASS - frameshift_variant CCR5 ENSG00000160791