Mercurial > repos > nml > metaspades

changeset 5:3ca2d2a9068c draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaspades commit a66345b894a128f7cb44876cc9a51f48c5213d95"
author iuc
date Thu, 16 Sep 2021 15:25:29 +0000
parents ce02f513e598
children a9b8c9e204ee
files metaspades.xml
diffstat 1 files changed, 4 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/metaspades.xml	Fri Mar 19 21:38:05 2021 +0000
+++ b/metaspades.xml	Thu Sep 16 15:25:29 2021 +0000
@@ -1,5 +1,8 @@
 <tool id="metaspades" name="metaSPAdes" version="3.9.0.1">
     <description>assembler for metagenomics datasets</description>
+    <xrefs>
+        <xref type="bio.tools">metaspades</xref>
+    </xrefs>
     <requirements>
         <requirement type="package" version="3.9.0">spades</requirement>
     </requirements>
@@ -9,7 +12,7 @@
     <command>
     <![CDATA[
 
-    if [[ -n \$GALAXY_MEMORY_MB ]]; then
+    if [ -n "\$GALAXY_MEMORY_MB" ]; then
         GALAXY_MEMORY_GB=\$(( GALAXY_MEMORY_MB / 1024 ));
     fi &&