view test-data/single_2020/output-report.csv @ 7:12b397ad8687 draft default tip

planemo upload for repository https://github.com/phac-nml/mykrobe-parser commit 97945a3ad655f1a0f99f577d0d423124460d900a

"file","Mykrobe_fabG1","Mykrobe_katG","Mykrobe_ahpC","Mykrobe_inhA","Mykrobe_ndh","Isoniazid_R_mutations","Isoniazid_Prediction","Mykrobe_rpoB","Rifampicin_R_mutations","Rifampicin_Prediction","Mykrobe_embB","Mykrobe_embA","Ethambutol_R_mutations","Ethambutol_Prediction","Mykrobe_pncA","Mykrobe_rpsA","Pyrazinamide_R_mutations","Pyrazinamide_Prediction","Mykrobe_Ofloxacin_gyrA","Ofloxacin_R_mutations","Ofloxacin_Prediction","Mykrobe_Moxifloxacin_gyrA","Moxifloxacin_R_mutations","Moxifloxacin_Prediction","Mykrobe_rpsL","Mykrobe_Streptomycin_rrs","Mykrobe_Streptomycin_gid","Streptomycin_R_mutations","Streptomycin_Prediction","Mykrobe_Amikacin_rrs","Amikacin_R_mutations","Amikacin_Prediction","Mykrobe_Capreomycin_rrs","Mykrobe_Capreomycin_tlyA","Capreomycin_R_mutations","Capreomycin_Prediction","Mykrobe_Kanamycin_rrs","Mykrobe_Kanamycin_eis","Kanamycin_R_mutations","Kanamycin_Prediction","Lims_Comment","Lims_INTComment","Mykrobe_Workflow_Version","mykrobe_version","Mykrobe_Resistance_probe_set","Mykrobe_min_depth_default_5","Mykrobe_min_conf_default_10","LIMS_file","Mutation_set_version"
"ERR2704812_L5","No Mutation","No Mutation","G-48A","No Mutation","No Mutation","ahpC_G-48A-G2726145A:360:0:42983","R","D435V","rpoB_D435V-GAC761109GTC:344:0:40497","R","No Mutation","No Mutation",NA,"S","No Mutation","No Mutation",NA,"S","No Mutation",NA,"S","No Mutation",NA,"S","No Mutation","No Mutation","No Mutation",NA,"S","No Mutation",NA,"S","No Mutation","No Mutation",NA,"S","No Mutation","No Mutation",NA,"S","","","","v0.10.0","tb-hunt-probe-set-jan-03-2019.fasta.gz","5","10","",""