Mercurial > repos > nml > package_python_3_4_bioext_0_17_3
changeset 1:1ca9f5fd8b65 draft default tip
planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_bioext_0_17_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
| author | nml |
|---|---|
| date | Thu, 07 Jul 2016 11:15:41 -0400 |
| parents | d71e21675123 |
| children | |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 15 insertions(+), 0 deletions(-) [+] |
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--- a/tool_dependencies.xml Thu Jul 07 09:57:47 2016 -0400 +++ b/tool_dependencies.xml Thu Jul 07 11:15:41 2016 -0400 @@ -9,9 +9,15 @@ <package name="numpy" version="1.10.1"> <repository changeset_revision="f182da2b1d78" name="package_python_3_4_numpy_1_10_1" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> + <package name="scipy" version="0.16"> + <repository changeset_revision="aaeb6262be47" name="package_python_3_4_scipy_0_16" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> <package name="biopython" version="1.66"> <repository changeset_revision="cb43753d0467" name="package_python_3_4_biopython_1_66" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> + <package name="six" version="1.10.0"> + <repository changeset_revision="93036b19115a" name="package_python_3_4_six_1_10_0" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> <package name="bioext" version="0.17.3"> <install version="1.0"> <actions> @@ -23,9 +29,15 @@ <repository changeset_revision="f182da2b1d78" name="package_python_3_4_numpy_1_10_1" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"> <package name="numpy" version="1.10.1" /> </repository> + <repository changeset_revision="aaeb6262be47" name="package_python_3_4_scipy_0_16" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="scipy" version="0.16" /> + </repository> <repository changeset_revision="cb43753d0467" name="package_python_3_4_biopython_1_66" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"> <package name="biopython" version="1.66" /> </repository> + <repository changeset_revision="93036b19115a" name="package_python_3_4_six_1_10_0" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="six" version="1.10.0" /> + </repository> <repository changeset_revision="20ecf5cd3c0e" name="package_python_3_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> <package name="python" version="3.4" /> </repository> @@ -42,8 +54,11 @@ <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_PYSAM]</environment_variable> <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable> + <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_SCIPY]</environment_variable> <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_BIOPYTHON]</environment_variable> + <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_SIX]</environment_variable> <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable> + <environment_variable action="prepend_to" name="PATH">$ENV[PATH_SCIPY]</environment_variable> <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> <environment_variable action="set_to" name="PYTHONPATH_BIOEXT">$INSTALL_DIR/lib/python</environment_variable> <environment_variable action="set_to" name="PATH_BIOEXT">$INSTALL_DIR/bin</environment_variable>