Mercurial > repos > nml > package_python_3_4_hppy_0_9_6
comparison tool_dependencies.xml @ 5:46decde5b780 draft default tip
planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hppy_0_9_6 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
| author | nml |
|---|---|
| date | Thu, 07 Jul 2016 13:19:28 -0400 |
| parents | a3569ef6d0ff |
| children |
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| 4:a3569ef6d0ff | 5:46decde5b780 |
|---|---|
| 5 </package> | 5 </package> |
| 6 <package name="cython" version="0.23.4"> | 6 <package name="cython" version="0.23.4"> |
| 7 <repository changeset_revision="52c11d398790" name="package_python_3_4_cython_0_23_4" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | 7 <repository changeset_revision="52c11d398790" name="package_python_3_4_cython_0_23_4" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
| 8 </package> | 8 </package> |
| 9 <package name="hyphy-python" version="0.1.3"> | 9 <package name="hyphy-python" version="0.1.3"> |
| 10 <repository changeset_revision="86947a99997b" name="package_python_3_4_hyphy_python_0_1_3" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | 10 <repository changeset_revision="5c14a49141f0" name="package_python_3_4_hyphy_python_0_1_3" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
| 11 </package> | 11 </package> |
| 12 <package name="fakemp" version="0.9.1"> | 12 <package name="fakemp" version="0.9.1"> |
| 13 <repository changeset_revision="13da2754601c" name="package_python_3_4_fakemp_0_9_1" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | 13 <repository changeset_revision="13da2754601c" name="package_python_3_4_fakemp_0_9_1" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
| 14 </package> | 14 </package> |
| 15 <package name="hppy" version="0.9.6"> | 15 <package name="hppy" version="0.9.6"> |
| 16 <install version="1.0"> | 16 <install version="1.0"> |
| 17 <actions> | 17 <actions> |
| 18 <action type="download_by_url">https://github.com/veg/hppy/archive/0.9.6.tar.gz</action> | 18 <action type="download_by_url">https://github.com/veg/hppy/archive/0.9.6.tar.gz</action> |
| 19 <action type="set_environment_for_install"> | 19 <action type="set_environment_for_install"> |
| 20 <repository changeset_revision="86947a99997b" name="package_python_3_4_hyphy_python_0_1_3" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"> | 20 <repository changeset_revision="5c14a49141f0" name="package_python_3_4_hyphy_python_0_1_3" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"> |
| 21 <package name="hyphy-python" version="0.1.3" /> | 21 <package name="hyphy-python" version="0.1.3" /> |
| 22 </repository> | 22 </repository> |
| 23 <repository changeset_revision="20ecf5cd3c0e" name="package_python_3_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> | 23 <repository changeset_revision="20ecf5cd3c0e" name="package_python_3_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> |
| 24 <package name="python" version="3.4" /> | 24 <package name="python" version="3.4" /> |
| 25 </repository> | 25 </repository> |
| 31 </repository> | 31 </repository> |
| 32 </action> | 32 </action> |
| 33 <action type="make_directory">$INSTALL_DIR/lib/python</action> | 33 <action type="make_directory">$INSTALL_DIR/lib/python</action> |
| 34 <action type="shell_command"> | 34 <action type="shell_command"> |
| 35 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && | 35 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && |
| 36 echo $PYTHONPATH && | |
| 37 python3 setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin | 36 python3 setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin |
| 38 </action> | 37 </action> |
| 39 <action type="set_environment"> | 38 <action type="set_environment"> |
| 40 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> | 39 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> |
| 41 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_HYPHY_PYTHON]</environment_variable> | 40 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_HYPHY_PYTHON]</environment_variable> |